prot_M-pyrifera_M_contig12996.5813.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig12996.5813.1
Unique Nameprot_M-pyrifera_M_contig12996.5813.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length614
Homology
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BLAST of mRNA_M-pyrifera_M_contig12996.5813.1 vs. uniprot
Match: D7FVL6_ECTSI (Hypothetical leucine rich repeat and GCG domain-containing receptor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVL6_ECTSI)

HSP 1 Score: 466 bits (1200), Expect = 3.280e-149
Identity = 287/538 (53.35%), Postives = 333/538 (61.90%), Query Frame = 0 
Query:    1 MLLKRPGAFTSLTWAVVLIAYAAQLSPTAGSYA---DVQLTGLEALYNSTSGQGWTISTGWRDASIGACSWYGVTCDDDDNENVTGLSLPNNGLVGDVSEAGELANVTSLEEVDLSGNELYGSVPLIFGLMPRLXXXXXXXXXLSSFPASWGSGARSLRHLFLQNNSISGSFPEAWLDANDSSAYPVVHLKSTSSWLPELRSLLLGENGMTLTGYTALQTVVNWGSLQALDLSDNALTGSVEDALTLYVCEGSGTAECGANRSSVGAPFLRVLKLDGNSLTGELPQVADTGGRRIDVLDVSNNGGISGTISASYSELLMLFASGTDLSGSEMPFLNDS----AVGSWTHESK-DGLFVCPALQPSADEGLLALTLDPSYDGYLTCVCDDGYSPSSGS--CSECPYGWYR--------LAEGXXXXXXXXXXXXAHSTTLQKGRWLRSQCVCSTNYYDELRGGGSEPSCLXXXXXXXXXXXXXXXXXXXXXXXGYILNITSSACEACVAGTYKPAEGNQLELCLXXXXXXXSEAVGATS 520
            + L  P       WA V  A A  L PTA + A   +VQ+ GLEALY +T+GQ W  STGW D S+G CSWYGVTCD +   NVTG+SL NN LVGDVSEA +L NV SLEE+DLS N+L G VPL  G+MP +         LS FPA+WGSGA  LRHL LQNN ISGSFP AWL+  DSS+YP+VHL+ +S WLPELRSLLLG N M  TGY ALQ V NW SLQ LDLSDNALTGSV+DAL LY                  +P                P+V DT  RRID+LDVS+NG   G + ASYSELL+LFA  T LSG ++P   D+    A G+W  +S    LFVCPA +PSADE + A+TLD +YDGY  C C+DG   S G   CSECP G YR        LAEG            ++STT+Q G WL+SQCVC+ N+YDE  G  SEPS  XXXXXXXXXXXX           G I N TS ACE+CVAGTYKPA GN + LCL       S+ VGATS
Sbjct:    2 LFLPWPSGLVRALWAAV--ATAGYLCPTAFASAYTEEVQIAGLEALYYATNGQDWANSTGWSDDSLGVCSWYGVTCDSEGG-NVTGISLSNNLLVGDVSEATDLTNVISLEEMDLSDNQLSGPVPLNLGMMPNMETLDLSGNELSYFPAAWGSGASMLRHLSLQNNRISGSFPAAWLNVTDSSSYPLVHLQPSSPWLPELRSLLLGGNNMNATGYVALQAVANWRSLQTLDLSDNALTGSVDDALALYY---------------YWSP----------------PRVVDTDNRRIDLLDVSDNGNFVGEVPASYSELLILFAENTGLSGLDLPDFIDATTTTAAGAWNEKSTVHDLFVCPAFKPSADENVAAVTLDHAYDGYSVCTCNDGLQGSGGDSECSECPLGSYRNLEKEDDPLAEGVCSPCP------SNSTTMQNGSWLKSQCVCAINFYDEQGGADSEPSXXXXXXXXXXXXXXAVNIASCECEPGRIFNTTSRACESCVAGTYKPAYGNHVGLCLPCSAGTYSDTVGATS 499
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BLAST of mRNA_M-pyrifera_M_contig12996.5813.1 vs. uniprot
Match: D7FVL7_ECTSI (Hypothetical leucine rich repeat and GCG domain-containing receptor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVL7_ECTSI)

HSP 1 Score: 152 bits (384), Expect = 4.470e-35
Identity = 80/137 (58.39%), Postives = 92/137 (67.15%), Query Frame = 0 
Query:   31 SYADVQLTGLEALYNSTSGQGWTISTGWRDASIGACSWYGVTCDDDDNENVTGLSLPNNGLVGDVSEAGELANVTSLEEVDLSGNELYGSVPLIFGLMPRLXXXXXXXXXLSSFPASWGSGARSLRHLFLQNNSISG 167
            SY + Q  GLEALYN+T G+ W  S+GWRDA++G C WYGV CD D   NVTGL+L  NGL G++SEA EL +V SL  +DLS NEL G V L FGLMP L         LS FP SWG+ A SLRHL LQ N ISG
Sbjct:   29 SYLETQQVGLEALYNATGGEQWASSSGWRDATLGVCDWYGVVCDSD-GRNVTGLALAGNGLAGNLSEAVELFDVLSLISIDLSDNELVGPVALGFGLMPDLEVLDLSRNDLSYFPTSWGTEASSLRHLSLQQNEISG 164
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BLAST of mRNA_M-pyrifera_M_contig12996.5813.1 vs. uniprot
Match: A0A7S2LX89_9STRA (Hypothetical protein (Fragment) n=2 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2LX89_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 1.070e-7
Identity = 29/66 (43.94%), Postives = 39/66 (59.09%), Query Frame = 0 
Query:   28 TAGSYADVQLTGLEALYNSTSGQGWTISTGWRDASIGACSWYGVTCDDDDNENVTGLSLPNNGLVG 93
            T G+    +   LEA+Y  T+GQ WT S+GW + S+  C WYG+TCD D    VT + L +N L G
Sbjct:   33 TDGNPRKFERASLEAIYEGTTGQNWTNSSGWMNVSVDHCQWYGITCDSDSY--VTSIDLRDNNLAG 96
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BLAST of mRNA_M-pyrifera_M_contig12996.5813.1 vs. uniprot
Match: A0A7S2LYR8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2LYR8_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 6.400e-7
Identity = 27/66 (40.91%), Postives = 39/66 (59.09%), Query Frame = 0 
Query:   28 TAGSYADVQLTGLEALYNSTSGQGWTISTGWRDASIGACSWYGVTCDDDDNENVTGLSLPNNGLVG 93
            T G+    +   LEA+Y  T+GQ WT S+GW + ++  C WYG+TCDD     V G+ L +N + G
Sbjct:   33 TDGNPRKFERASLEAIYEGTTGQNWTNSSGWMNVTVDHCQWYGITCDD---RVVIGIDLRDNNMSG 95
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BLAST of mRNA_M-pyrifera_M_contig12996.5813.1 vs. uniprot
Match: UPI0019D52BD8 (receptor kinase-like protein Xa21 n=2 Tax=Panicum virgatum TaxID=38727 RepID=UPI0019D52BD8)

HSP 1 Score: 59.7 bits (143), Expect = 1.610e-5
Identity = 29/71 (40.85%), Postives = 44/71 (61.97%), Query Frame = 0 
Query:   58 WRDASIGACSWYGVTCDDDDNENVTGLSLPNNGLVGDVSEAGELANVTSLEEVDLSGNELYGSVPLIFGLM 128
            W +AS+  C+W+GVTC       V  L+LP+ G+ G +S    LAN++SLE++ LS N  +G +P  F L+
Sbjct:   53 WSNASLEFCNWHGVTCSALSPRRVIELNLPSEGITGPISPC--LANLSSLEKIQLSNNSFHGGIPSEFCLL 121
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BLAST of mRNA_M-pyrifera_M_contig12996.5813.1 vs. uniprot
Match: A0A448Z9L5_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z9L5_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 1.960e-5
Identity = 32/84 (38.10%), Postives = 49/84 (58.33%), Query Frame = 0 
Query:   40 LEALYNSTSGQGWTISTGWRDASIGACSWYGVTCDDD-DNENVTGLSLPNNGLVGDVSEAGELANVTSLEEVDLSGNELYGSVP 122
            L   + ST+G+ W  S+GW       CSWYGV CDD  +++ VT L LP N LVG +++  E+  +  L+  D+  N + G++P
Sbjct:  223 LTTFFFSTNGESWVDSSGWL-REENECSWYGVDCDDSIESKYVTRLFLPQNNLVGSLTD--EIGLLDKLQRFDVYSNSITGTIP 303
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig12996.5813.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7FVL6_ECTSI3.280e-14953.35Hypothetical leucine rich repeat and GCG domain-co... [more]
D7FVL7_ECTSI4.470e-3558.39Hypothetical leucine rich repeat and GCG domain-co... [more]
A0A7S2LX89_9STRA1.070e-743.94Hypothetical protein (Fragment) n=2 Tax=Skeletonem... [more]
A0A7S2LYR8_9STRA6.400e-740.91Hypothetical protein (Fragment) n=1 Tax=Skeletonem... [more]
UPI0019D52BD81.610e-540.85receptor kinase-like protein Xa21 n=2 Tax=Panicum ... [more]
A0A448Z9L5_9STRA1.960e-538.10Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003591Leucine-rich repeat, typical subtypeSMARTSM00369LRR_typ_2coord: 128..151
e-value: 0.043
score: 23.0
coord: 221..244
e-value: 220.0
score: 2.2
coord: 104..127
e-value: 62.0
score: 6.7
IPR011641Tyrosine-protein kinase ephrin type A/B receptor-likeSMARTSM01411GCC2_GCC3_2coord: 382..431
e-value: 7.9E-4
score: 28.7
coord: 432..470
e-value: 17.0
score: 6.0
coord: 475..524
e-value: 2.8E-11
score: 53.5
coord: 525..564
e-value: 0.72
score: 18.3
coord: 565..604
e-value: 0.053
score: 22.7
IPR011641Tyrosine-protein kinase ephrin type A/B receptor-likePFAMPF07699Ephrin_rec_likecoord: 564..604
e-value: 4.5E-7
score: 29.5
coord: 475..524
e-value: 3.1E-8
score: 33.2
IPR001611Leucine-rich repeatPFAMPF13855LRR_8coord: 106..165
e-value: 3.5E-9
score: 36.3
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 130..151
score: 7.319
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 154..175
score: 5.91
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 223..245
score: 6.588
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 196..216
score: 4.578
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 266..288
score: 5.001
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 106..128
score: 5.625
NoneNo IPR availableGENE3D2.10.50.10coord: 472..538
e-value: 7.1E-9
score: 37.6
coord: 379..448
e-value: 2.6E-9
score: 39.0
NoneNo IPR availablePANTHERPTHR27008:SF300coord: 219..308
coord: 18..177
NoneNo IPR availablePANTHERPTHR27008FAMILY NOT NAMEDcoord: 219..308
coord: 18..177
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 7..18
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..6
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 19..22
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 23..613
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..22
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..30
score: 0.638
NoneNo IPR availableSUPERFAMILY52058L domain-likecoord: 51..307
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 36..339
e-value: 1.7E-43
score: 150.6
IPR009030Growth factor receptor cysteine-rich domain superfamilySUPERFAMILY57184Growth factor receptor domaincoord: 373..490
IPR009030Growth factor receptor cysteine-rich domain superfamilySUPERFAMILY57184Growth factor receptor domaincoord: 448..610

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig12996contigM-pyrifera_M_contig12996:2507..8663 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig12996.5813.1mRNA_M-pyrifera_M_contig12996.5813.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig12996 2507..8663 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig12996.5813.1 ID=prot_M-pyrifera_M_contig12996.5813.1|Name=mRNA_M-pyrifera_M_contig12996.5813.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=614bp
MLLKRPGAFTSLTWAVVLIAYAAQLSPTAGSYADVQLTGLEALYNSTSGQ
GWTISTGWRDASIGACSWYGVTCDDDDNENVTGLSLPNNGLVGDVSEAGE
LANVTSLEEVDLSGNELYGSVPLIFGLMPRLETLDLSGNELSSFPASWGS
GARSLRHLFLQNNSISGSFPEAWLDANDSSAYPVVHLKSTSSWLPELRSL
LLGENGMTLTGYTALQTVVNWGSLQALDLSDNALTGSVEDALTLYVCEGS
GTAECGANRSSVGAPFLRVLKLDGNSLTGELPQVADTGGRRIDVLDVSNN
GGISGTISASYSELLMLFASGTDLSGSEMPFLNDSAVGSWTHESKDGLFV
CPALQPSADEGLLALTLDPSYDGYLTCVCDDGYSPSSGSCSECPYGWYRL
AEGYDEVGGACEACPAHSTTLQKGRWLRSQCVCSTNYYDELRGGGSEPSC
LECPSGSTTASAGATNVTSCECGPGYILNITSSACEACVAGTYKPAEGNQ
LELCLACPAGSYSEAVGATSSSVCEPCPLGSYGESYGASSSESCVKCSAG
TYGSVEGLHSELLCTPCWAGYYSPTLGATSSSACVECPSNFSQPTTGASS
FSDCIPCSGGEVR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003591Leu-rich_rpt_typical-subtyp
IPR011641Tyr-kin_ephrin_A/B_rcpt-like
IPR001611Leu-rich_rpt
IPR032675LRR_dom_sf
IPR009030Growth_fac_rcpt_cys_sf