mRNA_M-pyrifera_M_contig12886.5773.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig12886.5773.1
Unique NamemRNA_M-pyrifera_M_contig12886.5773.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig12886.5773.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig12886contigM-pyrifera_M_contig12886:7826..8199 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size374
Cds size372
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815800.6337066-CDS-M-pyrifera_M_contig12886:7825..81971622815800.6337066-CDS-M-pyrifera_M_contig12886:7825..8197Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12886 7826..8197 +
1692277575.4774687-CDS-M-pyrifera_M_contig12886:7825..81971692277575.4774687-CDS-M-pyrifera_M_contig12886:7825..8197Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12886 7826..8197 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig12886.5773.1prot_M-pyrifera_M_contig12886.5773.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig12886 7826..8197 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig12886.5773.1

>prot_M-pyrifera_M_contig12886.5773.1 ID=prot_M-pyrifera_M_contig12886.5773.1|Name=mRNA_M-pyrifera_M_contig12886.5773.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=124bp
VARFKILEFQKHPALSRFKYQASSTKPRAKSTFALQHPEASFKRPAPSAR
VSSILKSSEPKKSHQASCVGPRAPSLEHLQALSPKSYAGLEHRASKVQGI
KPPSLEQQVPSLKHKASSLSKLHA
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mRNA from alignment at M-pyrifera_M_contig12886:7826..8199+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig12886.5773.1 ID=mRNA_M-pyrifera_M_contig12886.5773.1|Name=mRNA_M-pyrifera_M_contig12886.5773.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=374bp|location=Sequence derived from alignment at M-pyrifera_M_contig12886:7826..8199+ (Macrocystis pyrifera P11B4 male)
GTTGCAAGATTCAAAATCCTCGAGTTCCAAAAACATCCAGCCTTGAGCCG
CTTCAAGTATCAAGCATCGAGCACCAAGCCTCGAGCCAAATCAACCTTCG
CGCTACAGCATCCTGAAGCCTCTTTCAAGCGTCCAGCCCCAAGCGCCCGA
GTCTCTTCGATCCTCAAAAGCAGCGAGCCTAAAAAAAGTCATCAAGCTTC
GTGCGTCGGGCCTCGTGCACCGAGTCTCGAGCATCTCCAAGCCCTAAGTC
CCAAAAGCTACGCAGGTCTCGAGCATCGAGCCTCAAAAGTCCAAGGGATC
AAACCCCCAAGCCTAGAGCAACAAGTCCCAAGCCTGAAGCATAAAGCATC
AAGCCTCTCTAAGCTCCACGCCCC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig12886:7826..8199+

>mRNA_M-pyrifera_M_contig12886.5773.1 ID=mRNA_M-pyrifera_M_contig12886.5773.1|Name=mRNA_M-pyrifera_M_contig12886.5773.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=744bp|location=Sequence derived from alignment at M-pyrifera_M_contig12886:7826..8199+ (Macrocystis pyrifera P11B4 male)
GTTGCAAGATTCAAAATCCTCGAGTTCCAAAAACATCCAGCCTTGAGCCG
CTTCAAGTATCAAGCATCGAGCACCAAGCCTCGAGCCAAATCAACCTTCG
CGCTACAGCATCCTGAAGCCTCTTTCAAGCGTCCAGCCCCAAGCGCCCGA
GTCTCTTCGATCCTCAAAAGCAGCGAGCCTAAAAAAAGTCATCAAGCTTC
GTGCGTCGGGCCTCGTGCACCGAGTCTCGAGCATCTCCAAGCCCTAAGTC
CCAAAAGCTACGCAGGTCTCGAGCATCGAGCCTCAAAAGTCCAAGGGATC
AAACCCCCAAGCCTAGAGCAACAAGTCCCAAGCCTGAAGCATAAAGCATC
AAGCCTCTCTAAGCTCCACGCCGTTGCAAGATTCAAAATCCTCGAGTTCC
AAAAACATCCAGCCTTGAGCCGCTTCAAGTATCAAGCATCGAGCACCAAG
CCTCGAGCCAAATCAACCTTCGCGCTACAGCATCCTGAAGCCTCTTTCAA
GCGTCCAGCCCCAAGCGCCCGAGTCTCTTCGATCCTCAAAAGCAGCGAGC
CTAAAAAAAGTCATCAAGCTTCGTGCGTCGGGCCTCGTGCACCGAGTCTC
GAGCATCTCCAAGCCCTAAGTCCCAAAAGCTACGCAGGTCTCGAGCATCG
AGCCTCAAAAGTCCAAGGGATCAAACCCCCAAGCCTAGAGCAACAAGTCC
CAAGCCTGAAGCATAAAGCATCAAGCCTCTCTAAGCTCCACGCC
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