mRNA_M-pyrifera_M_contig128578.5739.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig128578.5739.1
Unique NamemRNA_M-pyrifera_M_contig128578.5739.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig128578.5739.1 vs. uniprot
Match: A0A7S4HID0_9EUKA (Hypothetical protein n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4HID0_9EUKA)

HSP 1 Score: 124 bits (310), Expect = 1.010e-33
Identity = 61/128 (47.66%), Postives = 81/128 (63.28%), Query Frame = 1 
Query:    1 PFLALRRVAPSKSDAILCVAGEHFGFALDRPHPLPEYPEAKGGGCGNLADAAWKAGDRGRLEHLLQLQGSYGLVRGGSRGWRILKSTWPWLEGSSLLDGKDAAVEVHCRENDVPVQVLWRGETWEVLE 384
            PFLAL + + +KS  ILCVAGEHFG+ALDR   LP +P AK GGC +L D+AWK G+R  +  ++ ++GSYG   G ++ W+I +ST PW EG  L+   D   EV    +     + W GETWEV E
Sbjct:   10 PFLALFKKSNTKS--ILCVAGEHFGYALDREGELPSFPSAKSGGCASLVDSAWKEGERDSIIKMISIEGSYGNTCGNNK-WKIKRSTVPWREGKPLISPGDVKFEVD--HSGKVTSISWNGETWEVFE 132
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BLAST of mRNA_M-pyrifera_M_contig128578.5739.1 vs. uniprot
Match: A0A7S2X7A1_9EUKA (Hypothetical protein n=2 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2X7A1_9EUKA)

HSP 1 Score: 110 bits (274), Expect = 2.940e-26
Identity = 58/134 (43.28%), Postives = 78/134 (58.21%), Query Frame = 1 
Query:    1 PFLALRRVAPSKS----DAILCVAGEHFGFALDRPHPLPEYPEAKGGGCGNLADAAWKAGDRGRLEHLLQLQGSYGLV--RGGSRGWRILKSTWPWLEGSSLLDGKDAAVEVHCRENDVPVQVLWRGETWEVLE 384
            P+LALRR+ P  +    +++L V G HF FA DR HPLP +  A  GGC +L DAA++AGDR ++E +L L+GSYG V    G+  W I  ST PW +G  LL  K    +   +   +P Q+   G  WEV E
Sbjct:  218 PYLALRRMKPQNAVDHRESLLIVVGNHFAFARDRKHPLPLFSGASKGGCASLVDAAFRAGDREKMEQMLDLEGSYGCVCDHEGNPTWEIKMSTLPWRQGQRLLTPKALGSKEFAK---IPSQIELFGGVWEVFE 348
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BLAST of mRNA_M-pyrifera_M_contig128578.5739.1 vs. uniprot
Match: A0A7S3Z9A1_9EUKA (Hypothetical protein n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3Z9A1_9EUKA)

HSP 1 Score: 107 bits (266), Expect = 4.160e-25
Identity = 56/134 (41.79%), Postives = 76/134 (56.72%), Query Frame = 1 
Query:    1 PFLALRRVAPSKS----DAILCVAGEHFGFALDRPHPLPEYPEAKGGGCGNLADAAWKAGDRGRLEHLLQLQGSYGLV--RGGSRGWRILKSTWPWLEGSSLLDGKDAAVEVHCRENDVPVQVLWRGETWEVLE 384
            P+LA+R V P  +    + +L V G HF FA DR HPLP +P    GGC +L DAA++AG+R ++E +L L+GSYG V    G+  W I  ST PW +G  LL  K    E   +   +P ++   G  WEV E
Sbjct:  218 PYLAMRLVKPENAADHRETLLIVVGNHFAFARDRKHPLPSFPGVSKGGCASLVDAAFRAGEREKMEQMLNLEGSYGRVCDHEGNPTWEIKMSTLPWRQGQRLLKPKALTGENFSK---IPSRIELLGGLWEVFE 348
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig128578.5739.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A7S4HID0_9EUKA1.010e-3347.66Hypothetical protein n=1 Tax=Vannella sp. CB-2014 ... [more]
A0A7S2X7A1_9EUKA2.940e-2643.28Hypothetical protein n=2 Tax=Lotharella oceanica T... [more]
A0A7S3Z9A1_9EUKA4.160e-2541.79Hypothetical protein n=1 Tax=Lotharella globosa Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig128578contigM-pyrifera_M_contig128578:13..396 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score99.8
Seed ortholog evalue1e-18
Seed eggNOG ortholog227086.JGI_V11_145052
Hectar predicted targeting categoryother localisation
EggNOG OGs2C8UU@1,2S355@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size384
Cds size384
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815798.6712813-CDS-M-pyrifera_M_contig128578:12..3961622815798.6712813-CDS-M-pyrifera_M_contig128578:12..396Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig128578 13..396 +
1692277574.5203314-CDS-M-pyrifera_M_contig128578:12..3961692277574.5203314-CDS-M-pyrifera_M_contig128578:12..396Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig128578 13..396 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig128578.5739.1prot_M-pyrifera_M_contig128578.5739.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig128578 13..396 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig128578.5739.1

>prot_M-pyrifera_M_contig128578.5739.1 ID=prot_M-pyrifera_M_contig128578.5739.1|Name=mRNA_M-pyrifera_M_contig128578.5739.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=128bp
PFLALRRVAPSKSDAILCVAGEHFGFALDRPHPLPEYPEAKGGGCGNLAD
AAWKAGDRGRLEHLLQLQGSYGLVRGGSRGWRILKSTWPWLEGSSLLDGK
DAAVEVHCRENDVPVQVLWRGETWEVLE
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mRNA from alignment at M-pyrifera_M_contig128578:13..396+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig128578.5739.1 ID=mRNA_M-pyrifera_M_contig128578.5739.1|Name=mRNA_M-pyrifera_M_contig128578.5739.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=384bp|location=Sequence derived from alignment at M-pyrifera_M_contig128578:13..396+ (Macrocystis pyrifera P11B4 male)
CCCTTCCTTGCCCTCAGGCGCGTGGCGCCTAGCAAGAGCGACGCAATCCT
TTGCGTTGCTGGCGAGCACTTTGGCTTCGCGCTCGACCGACCGCACCCTC
TTCCAGAGTACCCTGAAGCAAAGGGTGGTGGCTGCGGTAACCTCGCAGAC
GCAGCTTGGAAGGCAGGAGACCGCGGTCGTCTCGAGCATCTCCTCCAGCT
GCAGGGCAGCTACGGCCTCGTCAGGGGCGGCAGCCGAGGCTGGCGCATCC
TCAAGTCGACGTGGCCATGGCTTGAGGGCAGTTCCTTGCTGGATGGAAAG
GACGCTGCAGTGGAAGTGCACTGCAGAGAGAACGACGTTCCAGTCCAGGT
GTTGTGGAGGGGAGAGACGTGGGAGGTGCTCGAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig128578:13..396+

>mRNA_M-pyrifera_M_contig128578.5739.1 ID=mRNA_M-pyrifera_M_contig128578.5739.1|Name=mRNA_M-pyrifera_M_contig128578.5739.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=768bp|location=Sequence derived from alignment at M-pyrifera_M_contig128578:13..396+ (Macrocystis pyrifera P11B4 male)
CCCTTCCTTGCCCTCAGGCGCGTGGCGCCTAGCAAGAGCGACGCAATCCT
TTGCGTTGCTGGCGAGCACTTTGGCTTCGCGCTCGACCGACCGCACCCTC
TTCCAGAGTACCCTGAAGCAAAGGGTGGTGGCTGCGGTAACCTCGCAGAC
GCAGCTTGGAAGGCAGGAGACCGCGGTCGTCTCGAGCATCTCCTCCAGCT
GCAGGGCAGCTACGGCCTCGTCAGGGGCGGCAGCCGAGGCTGGCGCATCC
TCAAGTCGACGTGGCCATGGCTTGAGGGCAGTTCCTTGCTGGATGGAAAG
GACGCTGCAGTGGAAGTGCACTGCAGAGAGAACGACGTTCCAGTCCAGGT
GTTGTGGAGGGGAGAGACGTGGGAGGTGCTCGAGCCCTTCCTTGCCCTCA
GGCGCGTGGCGCCTAGCAAGAGCGACGCAATCCTTTGCGTTGCTGGCGAG
CACTTTGGCTTCGCGCTCGACCGACCGCACCCTCTTCCAGAGTACCCTGA
AGCAAAGGGTGGTGGCTGCGGTAACCTCGCAGACGCAGCTTGGAAGGCAG
GAGACCGCGGTCGTCTCGAGCATCTCCTCCAGCTGCAGGGCAGCTACGGC
CTCGTCAGGGGCGGCAGCCGAGGCTGGCGCATCCTCAAGTCGACGTGGCC
ATGGCTTGAGGGCAGTTCCTTGCTGGATGGAAAGGACGCTGCAGTGGAAG
TGCACTGCAGAGAGAACGACGTTCCAGTCCAGGTGTTGTGGAGGGGAGAG
ACGTGGGAGGTGCTCGAG
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