mRNA_M-pyrifera_M_contig128172.5662.1 (mRNA) Macrocystis pyrifera P11B4 male
|
Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig128172.5662.1 vs. uniprot
Match: A0A812THX7_SYMPI (Hypothetical protein n=1 Tax=Symbiodinium pilosum TaxID=2952 RepID=A0A812THX7_SYMPI) HSP 1 Score: 128 bits (322), Expect = 3.010e-32 Identity = 63/155 (40.65%), Postives = 99/155 (63.87%), Query Frame = 1
Query: 10 AKAWDLGSSGVRLFRFLHDPVQTVVDVLDTVALMLPSEVESDTPAPVRVRNAYFVQDYAGFRQEARS-AGRVDVDPSLVGSGDFIGTVRMGGLTSVLTWAMGSTTSHTTVALRRNGQLYVAESTVSDSYWPVDGVQVTPFEKWVDQAERADFNVV 471
++ WD+ + G+R+F F +P+ TV ++L+T L P + RNA F+++Y G + R G + ++ S + SGDFIG +R+ GL +L W MGS T HT +A+ +G+LYVAESTV+ SYWP +G+Q TP++KW++QA A ++ V
Sbjct: 63 SQVWDVETLGIRVFTFQDNPLVTVRNILETALLFAPDRTRG-VQSSFAERNADFMRNYIGATLKPRKDPGGLLLNSSDIRSGDFIGVLRLDGLDPMLAWGMGSHTGHTAIAIWEHGELYVAESTVNSSYWPTNGIQRTPYQKWIEQARAAGYSTV 216
BLAST of mRNA_M-pyrifera_M_contig128172.5662.1 vs. uniprot
Match: A0A7S4GIK8_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4GIK8_9EUGL) HSP 1 Score: 129 bits (325), Expect = 3.250e-32 Identity = 63/155 (40.65%), Postives = 98/155 (63.23%), Query Frame = 1
Query: 10 AKAWDLGSSGVRLFRFLHDPVQTVVDVLDTVALMLPSEVESDTPAPVRVRNAYFVQDYAGFRQEARSAGRVDVDPSLVGSGDFIGTVRMGGLTSVLTWAMGSTTSHTTVALRRNGQLYVAESTVSDSYWPVDGVQVTPFEKWVDQAERADFNVVW 474
A +D+ SGVR+ +F+ P+ + + TV+L +P+ ++ + P V N F+ Y G E S V + + V SGD G +R+ GL ++L WAMGS+T HT VA+R +G+LYV+EST D YWP DG+Q TP+++W+ Q ++AD++ VW
Sbjct: 189 ADRFDVDHSGVRIGQFVVSPLNILKALEATVSLFVPAILKPEIPEHVAATNLDFLAKYRGLYMEPLSTPPVVPNEAEVQSGDMFGGIRLDGLDTMLAWAMGSSTGHTAVAVRVDGELYVSESTTKDGYWPTDGIQKTPWKQWIAQVQKADYHWVW 343
BLAST of mRNA_M-pyrifera_M_contig128172.5662.1 vs. uniprot
Match: A0A6B2L2L9_9EUKA (Uncharacterized protein n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2L2L9_9EUKA) HSP 1 Score: 123 bits (309), Expect = 3.160e-30 Identity = 57/152 (37.50%), Postives = 91/152 (59.87%), Query Frame = 1
Query: 19 WDLGSSGVRLFRFLHDPVQTVVDVLDTVALMLPSEVESDTPAPVRVRNAYFVQDYAGFRQEARSAGRVDVDPSLVGSGDFIGTVRMGGLTSVLTWAMGSTTSHTTVAL-RRNGQLYVAESTVSDSYWPVDGVQVTPFEKWVDQAERADFNVV 471
+D+ +G+R+F F T + +TV L V ++ P N F++D+ R R+D+ S + SGD +G +R+ GL +L+W MGS T HT +A+ N QL+VAESTV+ +YWP +G+Q+TP++ W+DQA+ A +NV+
Sbjct: 103 YDIAHNGIRIFNFTEGITMTTESIFETVLLFFGGLVGANVPEWTAEDNLAFLKDHMNLVMPERPVNRIDIPKSEIKSGDLLGVIRLDGLDPMLSWGMGSRTGHTCIAMWDNNNQLFVAESTVNSAYWPTNGIQLTPWDTWMDQAQNASYNVL 254
BLAST of mRNA_M-pyrifera_M_contig128172.5662.1 vs. uniprot
Match: A0A0D2WSG0_CAPO3 (Uncharacterized protein n=1 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2WSG0_CAPO3) HSP 1 Score: 123 bits (309), Expect = 6.490e-30 Identity = 67/162 (41.36%), Postives = 94/162 (58.02%), Query Frame = 1
Query: 7 PAKAWDLGSSGVRLFRFLHDPVQTVVDVLDTV-----ALMLPSEVESDTPAPVRV--RNAYFVQDYAGFRQEARSAGRVDVDPSLVGSGDFIGTVRMGGLTSVLTWAMGSTTSHTTVALRRNGQLYVAESTVSDSYWPVDGVQVTPFEKWVDQAERADFNVV 471
PA+ D+G +G R+FRFL + V+T+VD+ +T+ AL L + S T P + N F+ DYA R+ V +DPS + SGDFIG VR+ GL + W GS HTTVAL +G+L + ES +YWPV+ VQ P+ W+ A AD+NV+
Sbjct: 184 PAELEDIGRNGFRVFRFLQNEVETLVDIYETLQLFLGALGLNTGGNSSTHVPTQTAENNLKFLHDYANLTMVPRTTIEVPLDPSEIESGDFIGIVRLDGLDPTIMWGSGSALGHTTVALWIDGELNICESQSKSNYWPVNLVQCNPYADWIKYATAADYNVI 345
BLAST of mRNA_M-pyrifera_M_contig128172.5662.1 vs. uniprot
Match: A0A812W8K8_SYMMI (Hypothetical protein (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812W8K8_SYMMI) HSP 1 Score: 117 bits (293), Expect = 1.720e-29 Identity = 61/139 (43.88%), Postives = 83/139 (59.71%), Query Frame = 1
Query: 58 LHDPVQTVVDVLDTVALMLPSEVESDTPAPVRVRNAYFVQDYAGFRQEARSA-GRVDVDPSLVGSGDFIGTVRMGGLTSVLTWAMGSTTSHTTVALRRNGQLYVAESTVSDSYWPVDGVQVTPFEKWVDQAERADFNVV 471
+ D +V ++L+TV L +P + P R RN F+ Y F E R + V SGDF G +R+ GL +L W GSTT HTTVA+ +G+LY+ ESTV DSYWP DG+Q TP+++W+ QAE A +NVV
Sbjct: 4 MTDQATSVANLLETVLLFVPEFTQQVDPLSAR-RNVDFMAKYPKFIMEERDPLSNLPPPAENVHSGDFFGVIRLDGLDPMLAWGRGSTTGHTTVAMWMDGELYICESTVLDSYWPTDGIQKTPYKQWLKQAEEAGYNVV 141
BLAST of mRNA_M-pyrifera_M_contig128172.5662.1 vs. uniprot
Match: A0A3P3Y8N8_PLABS (Uncharacterized protein n=2 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A3P3Y8N8_PLABS) HSP 1 Score: 113 bits (282), Expect = 3.140e-26 Identity = 56/86 (65.12%), Postives = 64/86 (74.42%), Query Frame = 1
Query: 223 DVDPSLVGSGDFIGTVRMGGLTSVLTWAMGSTTSHTTVALRR--NGQLYVAESTVSDSYWPVDGVQVTPFEKWVDQAERADFNVVW 474
DVD +GSGDF+G VR+ GL +L+WAMGSTT HT +ALR LYVAEST SYWPVDGVQ TPF KW++ AERA FNVVW
Sbjct: 236 DVDE--IGSGDFLGIVRLDGLDPMLSWAMGSTTGHTAIALRHPVTNDLYVAESTAKSSYWPVDGVQATPFAKWMELAERASFNVVW 319
BLAST of mRNA_M-pyrifera_M_contig128172.5662.1 vs. uniprot
Match: A0A078AH54_STYLE (Uncharacterized protein n=1 Tax=Stylonychia lemnae TaxID=5949 RepID=A0A078AH54_STYLE) HSP 1 Score: 84.0 bits (206), Expect = 6.730e-16 Identity = 46/153 (30.07%), Postives = 80/153 (52.29%), Query Frame = 1
Query: 37 GVRLFRFLHDPVQTVVDVLDTVALMLPSE--------VESDTPAPVRVRNAYFVQDYAGFRQEARSAGRVDVDPSLVGSGDFIGTVRMGGLTSVLTWAMGSTTSHTTVALR-RNGQLYVAESTVSDSYWPVDGVQVTPFEKWVDQAERADFNV 468
G+++F F + T + V + + + S P + N F+ + G++ E R V++D SL+ SGDF+ +R+ G+ ++ + G+ H+T+ALR +G+LYV ES YWP G+Q F +W++ A+ ADF+V
Sbjct: 207 GIQVFMFCDGYIDTFISVFNFALAFIGGLGTNPDLPIIGSHVPEYMEQANLNFLNETMGYQLEKREIQTVEIDESLIQSGDFLAIMRLDGVDPIIMYGSGTHAGHSTMALRFEDGELYVVESQ-DGWYWPKHGIQKNKFSQWIEWAKNADFHV 358
BLAST of mRNA_M-pyrifera_M_contig128172.5662.1 vs. uniprot
Match: A0A078AWV9_STYLE (Uncharacterized protein n=1 Tax=Stylonychia lemnae TaxID=5949 RepID=A0A078AWV9_STYLE) HSP 1 Score: 62.8 bits (151), Expect = 1.510e-8 Identity = 46/163 (28.22%), Postives = 77/163 (47.24%), Query Frame = 1
Query: 22 DLGSSGVRLFRFLHDPVQTVVDVLDTVALM---------LPSEVESDTPAPVRVRNAYFVQDYAGFRQEARSAGRVDVDPSLVGSGDFIGTVRMGGLTSVLTWAMGSTTSHTTVALRRNGQLYVAESTVSDSYW---PVDGVQVTPFEKWVDQAERADFNVVW 474
DL +G++ F F + L+T+++ +P+ + T R N +++ G + E R V++D SL+ SGD R+ G+ A GS H +AL ++ L+V ES D+ + G+Q FE+W+ AE AD++VVW
Sbjct: 102 DLHKNGIQFFTFCQTWQDMIPSTLETMSIFAGGLGLSRYIPTMGDHITDYQ-RDMNIEYLEKQLGLKLEQRIIDTVEIDKSLIKSGDLFLVRRLDGVQPFTMVASGSLVGHAAMALWQDDVLWVVES--QDALYFESGKKGIQKNKFEEWMQLAEYADYDVVW 261 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig128172.5662.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig128172.5662.1 >prot_M-pyrifera_M_contig128172.5662.1 ID=prot_M-pyrifera_M_contig128172.5662.1|Name=mRNA_M-pyrifera_M_contig128172.5662.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=158bp TDPAKAWDLGSSGVRLFRFLHDPVQTVVDVLDTVALMLPSEVESDTPAPVback to top mRNA from alignment at M-pyrifera_M_contig128172:6..479- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig128172.5662.1 ID=mRNA_M-pyrifera_M_contig128172.5662.1|Name=mRNA_M-pyrifera_M_contig128172.5662.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=474bp|location=Sequence derived from alignment at M-pyrifera_M_contig128172:6..479- (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig128172:6..479- >mRNA_M-pyrifera_M_contig128172.5662.1 ID=mRNA_M-pyrifera_M_contig128172.5662.1|Name=mRNA_M-pyrifera_M_contig128172.5662.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=948bp|location=Sequence derived from alignment at M-pyrifera_M_contig128172:6..479- (Macrocystis pyrifera P11B4 male)back to top |