mRNA_M-pyrifera_M_contig128034.5644.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig128034.5644.1
Unique NamemRNA_M-pyrifera_M_contig128034.5644.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig128034.5644.1 vs. uniprot
Match: A0A7S4RAV2_9DINO (Alpha-galactosidase (Fragment) n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4RAV2_9DINO)

HSP 1 Score: 111 bits (278), Expect = 1.910e-25
Identity = 65/161 (40.37%), Postives = 84/161 (52.17%), Query Frame = 1
Query:   40 DVGFLVENGLSGAKFDNCGPLNNITEWADVANATGVSLLLENCNNDESF-RANPSNT---PSNYFRAGSDISPSWPTISWNLLQHNEWLWASRPRG----WSFPDMLVVGTPFPHTPTLCPTPQLSVEEAKGHFAAWCVTSSPLILGHDLSNASEFLKWWP 498
            DV  LV+      K D+CG  NN+  WA++ N TG  +L+ENC+      R NP      P NYFR   DI P++ ++  NL     W    RP      W++PDML VG    H P        S+EE + HFAAWCVTS+PLIL  DL N +   + WP
Sbjct:  172 DVQRLVDLNFDSVKVDHCGQFNNLDRWAELINGTGHPVLIENCHWVGLLPRYNPEGQLWCPFNYFRTSGDIEPNFDSVLTNLQTMTRWADVQRPVSQPGCWAYPDMLEVG----HLP--------SMEEDRAHFAAWCVTSAPLILSLDLGNEALAKRIWP 320          
BLAST of mRNA_M-pyrifera_M_contig128034.5644.1 vs. uniprot
Match: A9UTV2_MONBE (Alpha-galactosidase n=1 Tax=Monosiga brevicollis TaxID=81824 RepID=A9UTV2_MONBE)

HSP 1 Score: 107 bits (267), Expect = 3.850e-24
Identity = 59/157 (37.58%), Postives = 83/157 (52.87%), Query Frame = 1
Query:   40 DVGFLVENGLSGAKFDNCGPLNNITEWADVANATGVSLLLENCNNDESFRANPSNTPSNYFRAGSDISPSWPTISWNL---LQHNEWLWA-SRPRGWSFPDMLVVGTPFPHTPTLCPTPQLSVEEAKGHFAAWCVTSSPLILGHDLSNASEFLKWWP 498
            DV  +   G  G K D CG   N+T WAD+ NATG  +L+ENC+  ++        P N++R   DI  +W ++  NL   ++  +W    SRP  W++PDML VG               S EE + HF AW + SSPLILG DL + ++F + WP
Sbjct:  150 DVTAIAGYGYDGVKLDGCGEFMNLTYWADLLNATGRPILIENCHWGDTLPT-VDWCPFNFYRTSGDIQANWASMMSNLHTTIKFQDWKQPLSRPGCWAYPDMLEVGN------------LASFEEDRTHFGAWAIVSSPLILGFDLQDQAKFDRVWP 293          
BLAST of mRNA_M-pyrifera_M_contig128034.5644.1 vs. uniprot
Match: A0A7S4R6Y7_9STRA (Alpha-galactosidase n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4R6Y7_9STRA)

HSP 1 Score: 105 bits (262), Expect = 1.390e-23
Identity = 62/170 (36.47%), Postives = 82/170 (48.24%), Query Frame = 1
Query:   37 QDVGFLVENGLSGAKFDNCGPLNNITEWADVANATGVSLLLENC----------NND---ESFRANPSNTPSNYFRAGSDISPSWPTISWNLLQHNEWLW---ASRPRGWSFPDMLVVGTPFPHTPTLCPTPQLSVEEAKGHFAAWCVTSSPLILGHDLSNASEFLKWWP 498
            Q    + E G  G K D CG   N+T WA++ NATG  +++ENC          N D         PS+ P N+FR   DI  +W ++ +NL    ++      SRP  W++PDML VG               S  E + HF AW +TSSPLILG+DL N     K WP
Sbjct:  156 QSAKAVAEAGFDGVKLDGCGQFRNLTWWAELLNATGRHIMIENCHWGGTVPGDYNGDAPCNGLETMPSDCPYNFFRTSGDIRNNWHSMFFNLQTTIDYQGDPPLSRPGAWAYPDMLEVGR------------LASFVEDRTHFGAWVITSSPLILGNDLHNDVVMDKIWP 313          
BLAST of mRNA_M-pyrifera_M_contig128034.5644.1 vs. uniprot
Match: A0A7S2G8D6_9STRA (Alpha-galactosidase n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2G8D6_9STRA)

HSP 1 Score: 104 bits (259), Expect = 3.150e-23
Identity = 57/154 (37.01%), Postives = 84/154 (54.55%), Query Frame = 1
Query:   40 DVGFLVENGLSGAKFDNCGPLNNITEWADVANATGVSLLLENCNNDESFRANPSNTPSNYFRAGSDISPSWPTISWNLLQHNEWLWA--SRPRGWSFPDMLVVGTPFPHTPTLCPTPQLSVEEAKGHFAAWCVTSSPLILGHDLSNASEFLKWW 495
            DV  L + G    K D CG   ++  WAD+ NATG ++++ENC+  E+        P N++R   D+  S+ +I  NL    E+  A  S+P  W++PDML VG    H P     P L++EE + HF AW + SSPL L HD++N +   + W
Sbjct:  155 DVNALYQFGFDAVKLDGCGAQRDLDLWADLINATGKAIMIENCHWGETVPTEDW-CPWNFYRTSGDVRASYESILSNLATVTEFAEAGLSKPGCWAYPDMLEVGCQ--HGPGGASDPGLTMEETRTHFGAWSIVSSPLTLSHDVNNDTVMDQIW 305          
BLAST of mRNA_M-pyrifera_M_contig128034.5644.1 vs. uniprot
Match: A0A812S3V2_9DINO (Alpha-galactosidase n=1 Tax=Symbiodinium sp. CCMP2592 TaxID=631055 RepID=A0A812S3V2_9DINO)

HSP 1 Score: 104 bits (259), Expect = 5.350e-23
Identity = 60/169 (35.50%), Postives = 91/169 (53.85%), Query Frame = 1
Query:    1 CCERGKVGPYPEQDVGFLVENGLSGAKFDNCGPLNNITEWADVANATGVSLLLENCNNDESFRANPSNT--PSNYFRAGSDISPSWPTISWNLLQHNEWLWA--SRPRGWSFPDMLVVGTPFPHTPTLCPTPQLSVEEAKGHFAAWCVTSSPLILGHDLSNASEFLKWW 495
            C E+  +    ++DV  LV  G    K DNCG  +++ +WA + NATG  +++ENC+  ++    P+ T  P N+FR   D+  S+ ++  NL    +W     SRP  W++PDML VG    H P     P LS +EA+ HF+AW + SSPL L  D+++       W
Sbjct:  238 CPEKEVIDSMYDKDVAALVAFGFDAIKLDNCGAQHDLDKWAGLINATGRRVMIENCHWGKTV---PTETWCPWNFFRTSGDVRASYGSVVANLQTTVQWAQRNLSRPGCWAYPDMLEVGCK--HGPGGDRDPGLSYQEARSHFSAWSIVSSPLTLSMDINDDEVMNAVW 401          
BLAST of mRNA_M-pyrifera_M_contig128034.5644.1 vs. uniprot
Match: A0A813BJ00_SYMMI (Alpha-galactosidase n=2 Tax=Symbiodinium TaxID=2949 RepID=A0A813BJ00_SYMMI)

HSP 1 Score: 100 bits (249), Expect = 1.280e-21
Identity = 58/169 (34.32%), Postives = 89/169 (52.66%), Query Frame = 1
Query:    1 CCERGKVGPYPEQDVGFLVENGLSGAKFDNCGPLNNITEWADVANATGVSLLLENCNNDESFRANPSNT--PSNYFRAGSDISPSWPTISWNLLQHNEWLWA--SRPRGWSFPDMLVVGTPFPHTPTLCPTPQLSVEEAKGHFAAWCVTSSPLILGHDLSNASEFLKWW 495
            C E+  +    ++DV  LV  G    K DNCG  +++ +WA + N TG  +++ENC+  ++    P+ T  P N+FR   D+  S+ ++  NL    +W     S+P  W++PDML VG    H P     P LS  EA+ HF+AW + SSPL L  D+++       W
Sbjct:  245 CPEKEVIDSMYDKDVAALVAFGFDAVKLDNCGAQHDLDKWAGLINKTGRKVMIENCHWGKTV---PTETWCPWNFFRTSGDVRASYGSVVANLQTTVQWAQRNLSKPGCWAYPDMLEVGCN--HGPGGDRDPGLSYPEARSHFSAWSIVSSPLTLSMDINDDDVMNAVW 408          
BLAST of mRNA_M-pyrifera_M_contig128034.5644.1 vs. uniprot
Match: A0A1Q9F2R5_SYMMI (Alpha-galactosidase n=3 Tax=Symbiodinium TaxID=2949 RepID=A0A1Q9F2R5_SYMMI)

HSP 1 Score: 100 bits (249), Expect = 1.630e-21
Identity = 58/169 (34.32%), Postives = 89/169 (52.66%), Query Frame = 1
Query:    1 CCERGKVGPYPEQDVGFLVENGLSGAKFDNCGPLNNITEWADVANATGVSLLLENCNNDESFRANPSNT--PSNYFRAGSDISPSWPTISWNLLQHNEWLWA--SRPRGWSFPDMLVVGTPFPHTPTLCPTPQLSVEEAKGHFAAWCVTSSPLILGHDLSNASEFLKWW 495
            C E+  +    ++DV  LV  G    K DNCG  +++ +WA + N TG  +++ENC+  ++    P+ T  P N+FR   D+  S+ ++  NL    +W     S+P  W++PDML VG    H P     P LS  EA+ HF+AW + SSPL L  D+++       W
Sbjct:  271 CPEKEVIDSMYDKDVAALVAFGFDAVKLDNCGAQHDLDKWAGLINKTGRKVMIENCHWGKTV---PTETWCPWNFFRTSGDVRASYGSVVANLQTTVQWAQRNLSKPGCWAYPDMLEVGCN--HGPGGDRDPGLSYPEARSHFSAWSIVSSPLTLSMDINDDDVMNAVW 434          
BLAST of mRNA_M-pyrifera_M_contig128034.5644.1 vs. uniprot
Match: A0A812XGL1_9DINO (Alpha-galactosidase n=1 Tax=Symbiodinium necroappetens TaxID=1628268 RepID=A0A812XGL1_9DINO)

HSP 1 Score: 96.7 bits (239), Expect = 3.420e-20
Identity = 58/170 (34.12%), Postives = 89/170 (52.35%), Query Frame = 1
Query:    1 CCERGKVGPYPEQDVGFLVENGLSGAKFDNCGPLNNITEWADVANATGVSLLLENCNNDESFRANPSNT--PSNYFRAGSDISPSWPTISWNLLQHNEWLWA--SRPRGWSFPDML-VVGTPFPHTPTLCPTPQLSVEEAKGHFAAWCVTSSPLILGHDLSNASEFLKWW 495
            C E+  +    ++DV  LV  G    K DNCG  +++ +WA + N TG  +++ENC+  ++    P+ T  P N+FR   D+  S+ ++  NL    +W     S+P  W++PDML  VG    H P     P LS  EA+ HF+AW + SSPL L  D+++       W
Sbjct:  214 CPEKEVIDSMYDKDVAALVAFGFDAVKLDNCGAQHDLDKWAGLINKTGRKVMIENCHWGKTV---PTETWCPWNFFRTSGDVRASYGSVVANLQTTVQWAQRNLSKPGCWAYPDMLEAVGCN--HGPGGDRDPGLSYPEARSHFSAWSIVSSPLTLSMDINDDDVMNAVW 378          
BLAST of mRNA_M-pyrifera_M_contig128034.5644.1 vs. uniprot
Match: A0A7S2RXL7_9STRA (Alpha-galactosidase n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RXL7_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 9.970e-20
Identity = 59/176 (33.52%), Postives = 87/176 (49.43%), Query Frame = 1
Query:    1 CCERGK-----VGPYPEQDVGFLVENGLSGAKFDNCGPLNNITEWADVANATGVSLLLENCNNDESFRANPSNT--PSNYFRAGSDISPSWPTISWNLLQHNEWLWA----SRPRGWSFPDMLVVGTPFPHTPTLCPTPQLSVEEAKGHFAAWCVTSSPLILGHDLSNASEFLKWW 495
            C E+G+     +  +   D   + + G    K D CG   N+T++ +  NATG   L+ENC+     R  P++   P +YFR   DI P W ++ +NL     +L      SRP  W++ DML VG               S  E + HF AWCVTS+PLILGH++++ S   + W
Sbjct:   29 CEEKGQFFGEAIDAHYRGDAWDVYQYGFDSVKLDGCGQFMNLTQFQEEFNATGKYYLIENCH---WGRTVPTHDWCPWSYFRTSVDIKPIWTSMLYNLQTMRRFLTLERPLSRPGCWAYGDMLEVGN------------LASFVEDRSHFGAWCVTSNPLILGHNITDDSTNDRLW 189          
BLAST of mRNA_M-pyrifera_M_contig128034.5644.1 vs. uniprot
Match: A0A7S2PTD0_9DINO (Alpha-galactosidase (Fragment) n=1 Tax=Brandtodinium nutricula TaxID=1333877 RepID=A0A7S2PTD0_9DINO)

HSP 1 Score: 94.7 bits (234), Expect = 1.600e-19
Identity = 57/159 (35.85%), Postives = 83/159 (52.20%), Query Frame = 1
Query:   34 EQDVGFLVEN-GLSGAKFDNCGPLNNITEWADVANATGVSLLLENCNNDESFRANPSNTPSNYFRAGSDISPSWPTISWNLLQHNEWL--WASRPRGWSFPDMLVVGTPF-PHTPTLCPTPQLSVEEAKGHFAAWCVTSSPLILGHDLSNASEFLKWWP 498
            E+DV ++    G    K D CG   ++  WA + N +G  +++ENC+   +        P N+FR   DI   + ++  NLL    W     SRP  W++PDML VG    P    L  +P LS++E   HF AWC+TSSPL L HD++N +   + WP
Sbjct:  149 ERDVHYMARVWGFDSVKLDGCGTQRDLDLWARLINQSGRPIMIENCHWGGTVPTKDW-CPWNFFRTSGDIFAIYGSVVANLLTTVHWAREGLSRPGCWAYPDMLEVGCQRGPPGDDL--SPGLSLDETYSHFGAWCITSSPLTLSHDVNNDTVMDEVWP 304          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig128034.5644.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S4RAV2_9DINO1.910e-2540.37Alpha-galactosidase (Fragment) n=1 Tax=Alexandrium... [more]
A9UTV2_MONBE3.850e-2437.58Alpha-galactosidase n=1 Tax=Monosiga brevicollis T... [more]
A0A7S4R6Y7_9STRA1.390e-2336.47Alpha-galactosidase n=1 Tax=Ditylum brightwellii T... [more]
A0A7S2G8D6_9STRA3.150e-2337.01Alpha-galactosidase n=1 Tax=Florenciella parvula T... [more]
A0A812S3V2_9DINO5.350e-2335.50Alpha-galactosidase n=1 Tax=Symbiodinium sp. CCMP2... [more]
A0A813BJ00_SYMMI1.280e-2134.32Alpha-galactosidase n=2 Tax=Symbiodinium TaxID=294... [more]
A0A1Q9F2R5_SYMMI1.630e-2134.32Alpha-galactosidase n=3 Tax=Symbiodinium TaxID=294... [more]
A0A812XGL1_9DINO3.420e-2034.12Alpha-galactosidase n=1 Tax=Symbiodinium necroappe... [more]
A0A7S2RXL7_9STRA9.970e-2033.52Alpha-galactosidase n=1 Tax=Rhizochromulina marina... [more]
A0A7S2PTD0_9DINO1.600e-1935.85Alpha-galactosidase (Fragment) n=1 Tax=Brandtodini... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig128034contigM-pyrifera_M_contig128034:2..499 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeOpisthokonta
Seed ortholog score109.8
Seed ortholog evalue1.3e-21
Seed eggNOG ortholog81824.XP_001743979.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.alpha-galactosidase activity
EggNOG OGs38EIP@33154,KOG2366@1,KOG2366@2759
COG Functional cat.G
Best tax levelOpisthokonta
Best eggNOG OGNA|NA|NA
Exons1
Model size498
Cds size498
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815794.1910887-CDS-M-pyrifera_M_contig128034:1..4991622815794.1910887-CDS-M-pyrifera_M_contig128034:1..499Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig128034 2..499 -
1692277572.6506042-CDS-M-pyrifera_M_contig128034:1..4991692277572.6506042-CDS-M-pyrifera_M_contig128034:1..499Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig128034 2..499 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig128034.5644.1prot_M-pyrifera_M_contig128034.5644.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig128034 2..499 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig128034.5644.1

>prot_M-pyrifera_M_contig128034.5644.1 ID=prot_M-pyrifera_M_contig128034.5644.1|Name=mRNA_M-pyrifera_M_contig128034.5644.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=166bp
CCERGKVGPYPEQDVGFLVENGLSGAKFDNCGPLNNITEWADVANATGVS
LLLENCNNDESFRANPSNTPSNYFRAGSDISPSWPTISWNLLQHNEWLWA
SRPRGWSFPDMLVVGTPFPHTPTLCPTPQLSVEEAKGHFAAWCVTSSPLI
LGHDLSNASEFLKWWP
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mRNA from alignment at M-pyrifera_M_contig128034:2..499-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig128034.5644.1 ID=mRNA_M-pyrifera_M_contig128034.5644.1|Name=mRNA_M-pyrifera_M_contig128034.5644.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=498bp|location=Sequence derived from alignment at M-pyrifera_M_contig128034:2..499- (Macrocystis pyrifera P11B4 male)
TGCTGCGAGAGGGGCAAAGTTGGGCCGTATCCGGAGCAGGATGTGGGGTT TTTGGTGGAAAACGGTCTGAGCGGAGCGAAATTCGACAATTGCGGACCGT TGAACAACATCACGGAGTGGGCAGATGTCGCGAATGCCACGGGGGTGTCT CTTTTGCTGGAAAATTGCAACAACGACGAATCCTTCCGAGCCAACCCTTC CAACACGCCGTCCAACTACTTTCGAGCTGGATCCGACATTTCTCCTTCCT GGCCCACCATTTCGTGGAACCTATTGCAACACAACGAGTGGCTGTGGGCG TCTCGACCCCGTGGTTGGAGCTTTCCGGATATGCTGGTGGTTGGGACGCC GTTCCCACACACCCCTACGCTCTGTCCGACGCCGCAGCTGAGTGTGGAAG AAGCAAAAGGCCACTTTGCAGCGTGGTGTGTCACTTCTTCCCCGCTCATC CTCGGCCATGATCTGAGCAATGCGAGCGAGTTCCTCAAGTGGTGGCCC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig128034:2..499-

>mRNA_M-pyrifera_M_contig128034.5644.1 ID=mRNA_M-pyrifera_M_contig128034.5644.1|Name=mRNA_M-pyrifera_M_contig128034.5644.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=996bp|location=Sequence derived from alignment at M-pyrifera_M_contig128034:2..499- (Macrocystis pyrifera P11B4 male)
TGCTGCGAGAGGGGCAAAGTTGGGCCGTATCCGGAGCAGGATGTGGGGTT
TTTGGTGGAAAACGGTCTGAGCGGAGCGAAATTCGACAATTGCGGACCGT
TGAACAACATCACGGAGTGGGCAGATGTCGCGAATGCCACGGGGGTGTCT
CTTTTGCTGGAAAATTGCAACAACGACGAATCCTTCCGAGCCAACCCTTC
CAACACGCCGTCCAACTACTTTCGAGCTGGATCCGACATTTCTCCTTCCT
GGCCCACCATTTCGTGGAACCTATTGCAACACAACGAGTGGCTGTGGGCG
TCTCGACCCCGTGGTTGGAGCTTTCCGGATATGCTGGTGGTTGGGACGCC
GTTCCCACACACCCCTACGCTCTGTCCGACGCCGCAGCTGAGTGTGGAAG
AAGCAAAAGGCCACTTTGCAGCGTGGTGTGTCACTTCTTCCCCGCTCATC
CTCGGCCATGATCTGAGCAATGCGAGCGAGTTCCTCAAGTGGTGGCCCTG
CTGCGAGAGGGGCAAAGTTGGGCCGTATCCGGAGCAGGATGTGGGGTTTT
TGGTGGAAAACGGTCTGAGCGGAGCGAAATTCGACAATTGCGGACCGTTG
AACAACATCACGGAGTGGGCAGATGTCGCGAATGCCACGGGGGTGTCTCT
TTTGCTGGAAAATTGCAACAACGACGAATCCTTCCGAGCCAACCCTTCCA
ACACGCCGTCCAACTACTTTCGAGCTGGATCCGACATTTCTCCTTCCTGG
CCCACCATTTCGTGGAACCTATTGCAACACAACGAGTGGCTGTGGGCGTC
TCGACCCCGTGGTTGGAGCTTTCCGGATATGCTGGTGGTTGGGACGCCGT
TCCCACACACCCCTACGCTCTGTCCGACGCCGCAGCTGAGTGTGGAAGAA
GCAAAAGGCCACTTTGCAGCGTGGTGTGTCACTTCTTCCCCGCTCATCCT
CGGCCATGATCTGAGCAATGCGAGCGAGTTCCTCAAGTGGTGGCCC
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