mRNA_M-pyrifera_M_contig127992.5633.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig127992.5633.1
Unique NamemRNA_M-pyrifera_M_contig127992.5633.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig127992.5633.1 vs. uniprot
Match: A0A6P8FVE7_CLUHA (DNA repair protein RAD51 homolog 3 n=1 Tax=Clupea harengus TaxID=7950 RepID=A0A6P8FVE7_CLUHA)

HSP 1 Score: 66.6 bits (161), Expect = 5.820e-11
Identity = 36/89 (40.45%), Postives = 57/89 (64.04%), Query Frame = 1
Query:    7 TTDEMLEATKVVRCADAGTLVAVCAGLDDILTKNPNIRLVIVDSVAFPFRHSLNPRARAAGLV-AVSRELKRNAMKHGVAIVAINQVTT 270
            T + +L    +VRC D   L+A C  L D LTK+P ++LV++DS+AFPFRH     ++   L+  ++++L + A +H VA+V  NQ+TT
Sbjct:  145 TVENILSRLWLVRCHDYVELLAHCYLLPDFLTKHPEVQLVVIDSIAFPFRHDFEDFSQRTRLLNGLAQQLIQLATEHSVAVVLTNQMTT 233          
BLAST of mRNA_M-pyrifera_M_contig127992.5633.1 vs. uniprot
Match: A0A8M1KDU3_CLUHA (LOW QUALITY PROTEIN: DNA repair protein RAD51 homolog 3-like n=1 Tax=Clupea harengus TaxID=7950 RepID=A0A8M1KDU3_CLUHA)

HSP 1 Score: 66.6 bits (161), Expect = 6.630e-11
Identity = 36/89 (40.45%), Postives = 57/89 (64.04%), Query Frame = 1
Query:    7 TTDEMLEATKVVRCADAGTLVAVCAGLDDILTKNPNIRLVIVDSVAFPFRHSLNPRARAAGLV-AVSRELKRNAMKHGVAIVAINQVTT 270
            T + +L    +VRC D   L+A C  L D LTK+P ++LV++DS+AFPFRH     ++   L+  ++++L + A +H VA+V  NQ+TT
Sbjct:  183 TVENILSRLWLVRCHDYVELLAHCYLLPDFLTKHPEVQLVVIDSIAFPFRHDFEDFSQRTRLLNGLAQQLIQLATEHSVAVVLTNQMTT 271          
BLAST of mRNA_M-pyrifera_M_contig127992.5633.1 vs. uniprot
Match: A0A5N5LKG9_PANHP (RECA_2 domain-containing protein n=5 Tax=Siluroidei TaxID=1489793 RepID=A0A5N5LKG9_PANHP)

HSP 1 Score: 65.9 bits (159), Expect = 1.240e-10
Identity = 37/87 (42.53%), Postives = 52/87 (59.77%), Query Frame = 1
Query:   13 DEMLEATKVVRCADAGTLVAVCAGLDDILTKNPNIRLVIVDSVAFPFRHSLNPRA-RAAGLVAVSRELKRNAMKHGVAIVAINQVTT 270
            +++L    +VRC D   L+A    L D L K P +RLV++DSVAFPFRH L   + R   L   S++L   + +HG A+V  NQ+TT
Sbjct:  186 EKILSGVFLVRCQDHTELLAELHLLHDFLRKRPQVRLVVIDSVAFPFRHELEDLSHRTRILTGFSQQLTHLSAQHGAAVVLTNQMTT 272          
BLAST of mRNA_M-pyrifera_M_contig127992.5633.1 vs. uniprot
Match: UPI001BFB52DF (DNA repair protein RAD51 homolog 3 isoform X1 n=2 Tax=Alosa sapidissima TaxID=34773 RepID=UPI001BFB52DF)

HSP 1 Score: 65.5 bits (158), Expect = 1.730e-10
Identity = 35/89 (39.33%), Postives = 57/89 (64.04%), Query Frame = 1
Query:    7 TTDEMLEATKVVRCADAGTLVAVCAGLDDILTKNPNIRLVIVDSVAFPFRHSLNPRARAAGLV-AVSRELKRNAMKHGVAIVAINQVTT 270
            T + +L    +VRC D   L+A C  L D LTK+P ++LV++DS+AFPFRH     ++   L+  ++++L + A ++ VA+V  NQ+TT
Sbjct:  189 TVENILSRLSLVRCHDYVELLAHCYLLPDFLTKHPEVQLVVIDSIAFPFRHDFEDFSQRTRLLNGLAQQLIQLATEYNVAVVLTNQMTT 277          
BLAST of mRNA_M-pyrifera_M_contig127992.5633.1 vs. uniprot
Match: A0A8J4T8E0_CLAMG (DNA repair protein RAD51 3 n=1 Tax=Clarias magur TaxID=1594786 RepID=A0A8J4T8E0_CLAMG)

HSP 1 Score: 63.2 bits (152), Expect = 1.030e-9
Identity = 37/89 (41.57%), Postives = 52/89 (58.43%), Query Frame = 1
Query:    7 TTDEMLEATKVVRCADAGTLVAVCAGLDDILTKNPNIRLVIVDSVAFPFRHSLNPRA-RAAGLVAVSRELKRNAMKHGVAIVAINQVTT 270
            T +++L    +VRC D   L+A    L D L K P +RLV++DSVAFPFRH L   + R   L  ++  L R + +H  A+V  NQ+TT
Sbjct:  184 TVEKILSGVFLVRCQDHVALLAELHLLHDFLRKRPQVRLVVIDSVAFPFRHCLEDLSHRTRLLTGLALRLARISAQHTAAVVLTNQMTT 272          
BLAST of mRNA_M-pyrifera_M_contig127992.5633.1 vs. uniprot
Match: UPI001FEDF698 (DNA repair protein RAD51 homolog 3 n=1 Tax=Tachysurus fulvidraco TaxID=1234273 RepID=UPI001FEDF698)

HSP 1 Score: 62.8 bits (151), Expect = 1.550e-9
Identity = 38/90 (42.22%), Postives = 56/90 (62.22%), Query Frame = 1
Query:    7 TTDEMLEATKVVRCADAGTLVAVCAGLDDILTKNPNIRLVIVDSVAFPFRHSLNPRARAAGLVA-VSRELKRNAM-KHGVAIVAINQVTT 270
            T +++L    +VRC D   L+A    L D L K P +RLV++DSVAFPFRH L   ++   L++  S+++ R A  +HG A+V  NQ+TT
Sbjct:  184 TVEKILSGVFLVRCHDHVALLAELHLLPDFLRKRPQVRLVVIDSVAFPFRHELEDVSQRTRLLSGFSQQVTRLASAQHGPAVVLTNQMTT 273          
BLAST of mRNA_M-pyrifera_M_contig127992.5633.1 vs. uniprot
Match: A0A5A9N1Y8_9TELE (DNA repair protein RAD51-like protein 3 n=1 Tax=Triplophysa tibetana TaxID=1572043 RepID=A0A5A9N1Y8_9TELE)

HSP 1 Score: 62.4 bits (150), Expect = 2.130e-9
Identity = 37/89 (41.57%), Postives = 55/89 (61.80%), Query Frame = 1
Query:    7 TTDEMLEATKVVRCADAGTLVAVCAGLDDILTKNPNIRLVIVDSVAFPFRHSL-NPRARAAGLVAVSRELKRNAMKHGVAIVAINQVTT 270
            T +++L +  +VRC D   L+A    L D L ++P +RLVI+DS+AFPFRH   N   R   L  ++++L R A +H VA+V  N +TT
Sbjct:  183 TVEKVLSSFFLVRCHDYVELLAEVYLLPDFLAEHPEVRLVIIDSIAFPFRHDFENLSQRTRLLNGLAQQLIRIATQHSVAVVLSNHMTT 271          
BLAST of mRNA_M-pyrifera_M_contig127992.5633.1 vs. uniprot
Match: A0A6J2WUW8_CHACN (DNA repair protein RAD51 homolog 3 n=1 Tax=Chanos chanos TaxID=29144 RepID=A0A6J2WUW8_CHACN)

HSP 1 Score: 62.0 bits (149), Expect = 2.920e-9
Identity = 33/89 (37.08%), Postives = 57/89 (64.04%), Query Frame = 1
Query:    7 TTDEMLEATKVVRCADAGTLVAVCAGLDDILTKNPNIRLVIVDSVAFPFRHSLNPRARAAGLV-AVSRELKRNAMKHGVAIVAINQVTT 270
            T +++L    ++RC D   L+A    L + L ++P++RLV++DS+AFPFRH     ++   L+  ++++L + A KH VA+V  NQ+TT
Sbjct:  183 TVEKILSNLFLIRCHDYVELLAEIYLLPEFLAQHPDVRLVVIDSIAFPFRHDFEDLSQRTRLLNGLAQQLIQMATKHSVAVVLTNQMTT 271          
BLAST of mRNA_M-pyrifera_M_contig127992.5633.1 vs. uniprot
Match: UPI00071C7F40 (DNA repair protein RAD51 homolog 3-like isoform X2 n=1 Tax=Octopus bimaculoides TaxID=37653 RepID=UPI00071C7F40)

HSP 1 Score: 61.6 bits (148), Expect = 3.880e-9
Identity = 34/89 (38.20%), Postives = 52/89 (58.43%), Query Frame = 1
Query:    7 TTDEMLEATKVVRCADAGTLVAVCAGLDDILTKNPNIRLVIVDSVAFPFRHSLNP-RARAAGLVAVSRELKRNAMKHGVAIVAINQVTT 270
            TTD++L      RC D   L+A+   L +++   P ++LVI+DS+AF FRH     R R   L  +++ L + A KH +A+V  NQ+TT
Sbjct:  157 TTDQVLNGIHYFRCRDYVELLAIIHLLSELIKDRPKVKLVIIDSIAFHFRHDFEDIRLRTCLLTTIAQSLIQIANKHTLAVVLTNQMTT 245          
BLAST of mRNA_M-pyrifera_M_contig127992.5633.1 vs. uniprot
Match: A0A0L8FWN0_OCTBM (RECA_2 domain-containing protein n=3 Tax=Octopus TaxID=6643 RepID=A0A0L8FWN0_OCTBM)

HSP 1 Score: 61.6 bits (148), Expect = 4.050e-9
Identity = 34/89 (38.20%), Postives = 52/89 (58.43%), Query Frame = 1
Query:    7 TTDEMLEATKVVRCADAGTLVAVCAGLDDILTKNPNIRLVIVDSVAFPFRHSLNP-RARAAGLVAVSRELKRNAMKHGVAIVAINQVTT 270
            TTD++L      RC D   L+A+   L +++   P ++LVI+DS+AF FRH     R R   L  +++ L + A KH +A+V  NQ+TT
Sbjct:  183 TTDQVLNGIHYFRCRDYVELLAIIHLLSELIKDRPKVKLVIIDSIAFHFRHDFEDIRLRTCLLTTIAQSLIQIANKHTLAVVLTNQMTT 271          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig127992.5633.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6P8FVE7_CLUHA5.820e-1140.45DNA repair protein RAD51 homolog 3 n=1 Tax=Clupea ... [more]
A0A8M1KDU3_CLUHA6.630e-1140.45LOW QUALITY PROTEIN: DNA repair protein RAD51 homo... [more]
A0A5N5LKG9_PANHP1.240e-1042.53RECA_2 domain-containing protein n=5 Tax=Siluroide... [more]
UPI001BFB52DF1.730e-1039.33DNA repair protein RAD51 homolog 3 isoform X1 n=2 ... [more]
A0A8J4T8E0_CLAMG1.030e-941.57DNA repair protein RAD51 3 n=1 Tax=Clarias magur T... [more]
UPI001FEDF6981.550e-942.22DNA repair protein RAD51 homolog 3 n=1 Tax=Tachysu... [more]
A0A5A9N1Y8_9TELE2.130e-941.57DNA repair protein RAD51-like protein 3 n=1 Tax=Tr... [more]
A0A6J2WUW8_CHACN2.920e-937.08DNA repair protein RAD51 homolog 3 n=1 Tax=Chanos ... [more]
UPI00071C7F403.880e-938.20DNA repair protein RAD51 homolog 3-like isoform X2... [more]
A0A0L8FWN0_OCTBM4.050e-938.20RECA_2 domain-containing protein n=3 Tax=Octopus T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig127992contigM-pyrifera_M_contig127992:84..353 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionP-loop containing nucleoside triphosphate hydrolase
Ec32 orthologEc-15_004400.1
Exons1
Model size270
Cds size252
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815793.7554896-UTR-M-pyrifera_M_contig127992:83..1011622815793.7554896-UTR-M-pyrifera_M_contig127992:83..101Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig127992 84..101 +
1692277572.4899313-UTR-M-pyrifera_M_contig127992:83..1011692277572.4899313-UTR-M-pyrifera_M_contig127992:83..101Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig127992 84..101 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815793.7726552-CDS-M-pyrifera_M_contig127992:101..3531622815793.7726552-CDS-M-pyrifera_M_contig127992:101..353Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig127992 102..353 +
1692277572.5043495-CDS-M-pyrifera_M_contig127992:101..3531692277572.5043495-CDS-M-pyrifera_M_contig127992:101..353Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig127992 102..353 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig127992.5633.1prot_M-pyrifera_M_contig127992.5633.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig127992 102..353 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig127992.5633.1

>prot_M-pyrifera_M_contig127992.5633.1 ID=prot_M-pyrifera_M_contig127992.5633.1|Name=mRNA_M-pyrifera_M_contig127992.5633.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=84bp
MLEATKVVRCADAGTLVAVCAGLDDILTKNPNIRLVIVDSVAFPFRHSLN
PRARAAGLVAVSRELKRNAMKHGVAIVAINQVTT
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mRNA from alignment at M-pyrifera_M_contig127992:84..353+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig127992.5633.1 ID=mRNA_M-pyrifera_M_contig127992.5633.1|Name=mRNA_M-pyrifera_M_contig127992.5633.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=270bp|location=Sequence derived from alignment at M-pyrifera_M_contig127992:84..353+ (Macrocystis pyrifera P11B4 male)
GTCCCAACCACGGATGAAATGTTGGAAGCAACCAAAGTTGTACGTTGTGC TGATGCTGGTACTTTGGTTGCTGTGTGTGCAGGTTTGGATGATATTCTCA CCAAGAACCCAAATATTCGCCTTGTGATTGTTGACTCTGTTGCATTTCCA TTCCGTCACTCTCTCAACCCAAGAGCGAGAGCTGCAGGGTTGGTTGCAGT GTCCCGTGAACTCAAACGCAACGCAATGAAGCATGGTGTTGCAATCGTTG CAATCAACCAAGTTACAACT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig127992:84..353+

>mRNA_M-pyrifera_M_contig127992.5633.1 ID=mRNA_M-pyrifera_M_contig127992.5633.1|Name=mRNA_M-pyrifera_M_contig127992.5633.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=504bp|location=Sequence derived from alignment at M-pyrifera_M_contig127992:84..353+ (Macrocystis pyrifera P11B4 male)
ATGTTGGAAGCAACCAAAGTTGTACGTTGTGCTGATGCTGGTACTTTGGT
TGCTGTGTGTGCAGGTTTGGATGATATTCTCACCAAGAACCCAAATATTC
GCCTTGTGATTGTTGACTCTGTTGCATTTCCATTCCGTCACTCTCTCAAC
CCAAGAGCGAGAGCTGCAGGGTTGGTTGCAGTGTCCCGTGAACTCAAACG
CAACGCAATGAAGCATGGTGTTGCAATCGTTGCAATCAACCAAGTTACAA
CTATGTTGGAAGCAACCAAAGTTGTACGTTGTGCTGATGCTGGTACTTTG
GTTGCTGTGTGTGCAGGTTTGGATGATATTCTCACCAAGAACCCAAATAT
TCGCCTTGTGATTGTTGACTCTGTTGCATTTCCATTCCGTCACTCTCTCA
ACCCAAGAGCGAGAGCTGCAGGGTTGGTTGCAGTGTCCCGTGAACTCAAA
CGCAACGCAATGAAGCATGGTGTTGCAATCGTTGCAATCAACCAAGTTAC
AACT
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