mRNA_M-pyrifera_M_contig127549.5554.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig127549.5554.1
Unique NamemRNA_M-pyrifera_M_contig127549.5554.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig127549.5554.1 vs. uniprot
Match: A0A2E7KH80_9PLAN (Uncharacterized protein n=5 Tax=Gimesia TaxID=1649453 RepID=A0A2E7KH80_9PLAN)

HSP 1 Score: 240 bits (612), Expect = 8.760e-80
Identity = 115/116 (99.14%), Postives = 116/116 (100.00%), Query Frame = 1 
Query:    1 MRRIPRFITNDERLDEYRSLPLDEALARIIAVWRSLPALYRGPGPIGMKEIPLGSQLADWLVYEHPETEQALYDHLQDESVVLRAYCVHTLLRMGSRLLLKVPDTITECHDKVTRC 348
            MRRIPRFITNDERLDEYRSLPLDEALARIIAVWRSLPALYRGPGPIGMKEIPLGSQLADWLVYEHPETEQALYDHLQDE+VVLRAYCVHTLLRMGSRLLLKVPDTITECHDKVTRC
Sbjct:    1 MRRIPRFITNDERLDEYRSLPLDEALARIIAVWRSLPALYRGPGPIGMKEIPLGSQLADWLVYEHPETEQALYDHLQDENVVLRAYCVHTLLRMGSRLLLKVPDTITECHDKVTRC 116
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig127549.5554.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2E7KH80_9PLAN8.760e-8099.14Uncharacterized protein n=5 Tax=Gimesia TaxID=1649... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig127549contigM-pyrifera_M_contig127549:3..350 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size348
Cds size348
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815789.9614317-CDS-M-pyrifera_M_contig127549:2..3501622815789.9614317-CDS-M-pyrifera_M_contig127549:2..350Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig127549 3..350 -
1692277570.6808066-CDS-M-pyrifera_M_contig127549:2..3501692277570.6808066-CDS-M-pyrifera_M_contig127549:2..350Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig127549 3..350 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig127549.5554.1prot_M-pyrifera_M_contig127549.5554.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig127549 3..350 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig127549.5554.1

>prot_M-pyrifera_M_contig127549.5554.1 ID=prot_M-pyrifera_M_contig127549.5554.1|Name=mRNA_M-pyrifera_M_contig127549.5554.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=116bp
MRRIPRFITNDERLDEYRSLPLDEALARIIAVWRSLPALYRGPGPIGMKE
IPLGSQLADWLVYEHPETEQALYDHLQDESVVLRAYCVHTLLRMGSRLLL
KVPDTITECHDKVTRC
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mRNA from alignment at M-pyrifera_M_contig127549:3..350-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig127549.5554.1 ID=mRNA_M-pyrifera_M_contig127549.5554.1|Name=mRNA_M-pyrifera_M_contig127549.5554.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=348bp|location=Sequence derived from alignment at M-pyrifera_M_contig127549:3..350- (Macrocystis pyrifera P11B4 male)
ATGCGACGTATTCCCAGATTCATTACTAATGATGAGCGTCTCGACGAGTA
CCGTTCCTTGCCGCTGGATGAGGCTTTAGCGCGGATTATTGCTGTCTGGC
GGTCCCTGCCGGCACTGTACCGCGGACCGGGGCCCATTGGCATGAAAGAG
ATTCCGTTGGGATCTCAACTGGCCGACTGGCTTGTGTATGAGCATCCGGA
AACCGAGCAGGCACTCTACGATCATCTGCAGGATGAGAGTGTCGTGTTGC
GTGCCTACTGCGTTCATACGCTACTCAGGATGGGCAGTCGCCTGCTGCTG
AAGGTGCCTGATACGATAACCGAGTGTCACGATAAGGTGACGCGCTGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig127549:3..350-

>mRNA_M-pyrifera_M_contig127549.5554.1 ID=mRNA_M-pyrifera_M_contig127549.5554.1|Name=mRNA_M-pyrifera_M_contig127549.5554.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=696bp|location=Sequence derived from alignment at M-pyrifera_M_contig127549:3..350- (Macrocystis pyrifera P11B4 male)
ATGCGACGTATTCCCAGATTCATTACTAATGATGAGCGTCTCGACGAGTA
CCGTTCCTTGCCGCTGGATGAGGCTTTAGCGCGGATTATTGCTGTCTGGC
GGTCCCTGCCGGCACTGTACCGCGGACCGGGGCCCATTGGCATGAAAGAG
ATTCCGTTGGGATCTCAACTGGCCGACTGGCTTGTGTATGAGCATCCGGA
AACCGAGCAGGCACTCTACGATCATCTGCAGGATGAGAGTGTCGTGTTGC
GTGCCTACTGCGTTCATACGCTACTCAGGATGGGCAGTCGCCTGCTGCTG
AAGGTGCCTGATACGATAACCGAGTGTCACGATAAGGTGACGCGCTGCAT
GCGACGTATTCCCAGATTCATTACTAATGATGAGCGTCTCGACGAGTACC
GTTCCTTGCCGCTGGATGAGGCTTTAGCGCGGATTATTGCTGTCTGGCGG
TCCCTGCCGGCACTGTACCGCGGACCGGGGCCCATTGGCATGAAAGAGAT
TCCGTTGGGATCTCAACTGGCCGACTGGCTTGTGTATGAGCATCCGGAAA
CCGAGCAGGCACTCTACGATCATCTGCAGGATGAGAGTGTCGTGTTGCGT
GCCTACTGCGTTCATACGCTACTCAGGATGGGCAGTCGCCTGCTGCTGAA
GGTGCCTGATACGATAACCGAGTGTCACGATAAGGTGACGCGCTGC
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