mRNA_M-pyrifera_M_contig127325.5503.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig127325.5503.1
Unique NamemRNA_M-pyrifera_M_contig127325.5503.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig127325.5503.1 vs. uniprot
Match: A0A2G9H886_9LAMI (Serine/threonine protein kinase n=1 Tax=Handroanthus impetiginosus TaxID=429701 RepID=A0A2G9H886_9LAMI)

HSP 1 Score: 68.2 bits (165), Expect = 1.010e-10
Identity = 42/103 (40.78%), Postives = 59/103 (57.28%), Query Frame = 1
Query:   25 CGWFGVSCNGDGVVTSLALPSNNLVGSIPPSLASLRSLTSLNVSDNRGLSGVLLYPFSWASFPAMEVLDFSNTAYLVSIVDI-LLPPKLKILRLSGSPVHGEV 330
            C W GV C+G G +T+L LPS  L+GSIPPS+ +L S++ L++S N  LSG L   F +AS   ++V+D S       I     LP  +K   LS +  HG +
Sbjct:   80 CSWEGVGCDGSGKLTNLWLPSRGLIGSIPPSIVNLSSISQLSLSHN-WLSGSLPDGF-FASLNQLQVVDLSRNRLAGEIPPSDKLPATVKTFNLSSNHFHGTI 180          
BLAST of mRNA_M-pyrifera_M_contig127325.5503.1 vs. uniprot
Match: A0A314XJU8_PRUYE (Receptor-like protein 2 n=1 Tax=Prunus yedoensis var. nudiflora TaxID=2094558 RepID=A0A314XJU8_PRUYE)

HSP 1 Score: 67.8 bits (164), Expect = 1.220e-10
Identity = 48/133 (36.09%), Postives = 66/133 (49.62%), Query Frame = 1
Query:   25 CGWFGVSCNGDGVVTSLALPSNNLVGSIPPSLASLRSLTSLNVSDNRGLSGVLLYPFS-----WASFPAMEVLDFSNTAYLVSIVDILLPPKLKILRLSGSPVHGEVP----RLPDSLVDFRVAQTQVTGAVP 396
            C W G++CN DG VT L LPS  L G I PSL +L  LT LN+  N      L  P S     +     +E+LD SN   L   + + LP  ++I+ LS +  HG VP    +   +L  F V+    +G +P
Sbjct:   21 CYWEGITCNQDGWVTRLHLPSKGLKGGIHPSLGNLTHLTHLNLCHNS-----LYCPTSNEIEFFLPLNHLEILDLSNNL-LSGELPLSLPSNIQIVDLSTNHFHGVVPSSFFQQARNLTSFNVSNNTFSGPIP 147          
BLAST of mRNA_M-pyrifera_M_contig127325.5503.1 vs. uniprot
Match: M5W258_PRUPE (Uncharacterized protein (Fragment) n=1 Tax=Prunus persica TaxID=3760 RepID=M5W258_PRUPE)

HSP 1 Score: 67.0 bits (162), Expect = 2.470e-10
Identity = 48/133 (36.09%), Postives = 66/133 (49.62%), Query Frame = 1
Query:   25 CGWFGVSCNGDGVVTSLALPSNNLVGSIPPSLASLRSLTSLNVSDNRGLSGVLLYPFS-----WASFPAMEVLDFSNTAYLVSIVDILLPPKLKILRLSGSPVHGEVP----RLPDSLVDFRVAQTQVTGAVP 396
            C W G++CN DG VT L LPS  L G I PSL +L  LT LN+S N      L  P S     +     +E+LD S    L   + + LP  ++I+ LS +  HG VP    +   +L  F V+    +G +P
Sbjct:    5 CYWEGITCNQDGWVTRLHLPSKGLKGGIHPSLGNLTHLTHLNLSHNS-----LYCPTSKEIEFFLPLNRLEILDLSYNL-LSGELPLSLPSNIQIVDLSTNHFHGVVPSSFFQQARNLTSFNVSNNTFSGPIP 131          
BLAST of mRNA_M-pyrifera_M_contig127325.5503.1 vs. uniprot
Match: A0A6P5SE81_PRUAV (receptor-like protein 2 n=6 Tax=Prunus TaxID=3754 RepID=A0A6P5SE81_PRUAV)

HSP 1 Score: 65.9 bits (159), Expect = 6.280e-10
Identity = 47/133 (35.34%), Postives = 66/133 (49.62%), Query Frame = 1
Query:   25 CGWFGVSCNGDGVVTSLALPSNNLVGSIPPSLASLRSLTSLNVSDNRGLSGVLLYPFS-----WASFPAMEVLDFSNTAYLVSIVDILLPPKLKILRLSGSPVHGEVP----RLPDSLVDFRVAQTQVTGAVP 396
            C W G++CN DG VT L LPS  L G I PSL +L  LT LN+S N      L  P S     +     +E+LD S    L   + + LP  ++I+ LS +  HG VP    +   +L  F ++    +G +P
Sbjct:   53 CYWEGITCNQDGWVTRLHLPSKGLKGGIHPSLGNLTHLTHLNLSHNS-----LYCPTSNEIEFFFPLNCLEILDLSYNL-LSGELPLSLPSNIQIVDLSTNHFHGVVPSSFFQQARNLTSFNLSNNTFSGPIP 179          
BLAST of mRNA_M-pyrifera_M_contig127325.5503.1 vs. uniprot
Match: M5WGT9_PRUPE (LRRNT_2 domain-containing protein n=1 Tax=Prunus persica TaxID=3760 RepID=M5WGT9_PRUPE)

HSP 1 Score: 64.7 bits (156), Expect = 1.510e-9
Identity = 53/133 (39.85%), Postives = 68/133 (51.13%), Query Frame = 1
Query:   25 CGWFGVSCNGDGVVTSLALPSNNLVGSIPPS---LASLRSLTSLNVSDNRGLSGVLLYPFSWASFPAMEVLDFSNTAYLVSIVDILLPPKLKI--LRLSGSPVHGEVP----RLPDSLVDFRVAQTQVTGAVP 396
            C W G++CN DG VT L LPS  L G I PS   L +L  LT LN+S N  L G L   F   S   +E+LD S    L+S    L PP   I  L LS +  HG +P    +   SL  F V+   ++G++P
Sbjct:   51 CQWKGITCNQDGWVTHLLLPSKELKGGIFPSSSSLGNLTHLTHLNLSHN-SLCGSLTEFF--LSLNRLEILDLSYN--LLSGELPLYPPSSNIQKLDLSSNHFHGAIPSSFFQKAWSLTSFNVSNNTLSGSIP 178          
BLAST of mRNA_M-pyrifera_M_contig127325.5503.1 vs. uniprot
Match: A0A251PLE4_PRUPE (LRRNT_2 domain-containing protein n=9 Tax=Prunus TaxID=3754 RepID=A0A251PLE4_PRUPE)

HSP 1 Score: 64.7 bits (156), Expect = 1.590e-9
Identity = 53/133 (39.85%), Postives = 68/133 (51.13%), Query Frame = 1
Query:   25 CGWFGVSCNGDGVVTSLALPSNNLVGSIPPS---LASLRSLTSLNVSDNRGLSGVLLYPFSWASFPAMEVLDFSNTAYLVSIVDILLPPKLKI--LRLSGSPVHGEVP----RLPDSLVDFRVAQTQVTGAVP 396
            C W G++CN DG VT L LPS  L G I PS   L +L  LT LN+S N  L G L   F   S   +E+LD S    L+S    L PP   I  L LS +  HG +P    +   SL  F V+   ++G++P
Sbjct:   57 CQWKGITCNQDGWVTHLLLPSKELKGGIFPSSSSLGNLTHLTHLNLSHN-SLCGSLTEFF--LSLNRLEILDLSYN--LLSGELPLYPPSSNIQKLDLSSNHFHGAIPSSFFQKAWSLTSFNVSNNTLSGSIP 184          
BLAST of mRNA_M-pyrifera_M_contig127325.5503.1 vs. uniprot
Match: A0A2P6QN32_ROSCH (Putative non-specific serine/threonine protein kinase n=6 Tax=Rosa chinensis TaxID=74649 RepID=A0A2P6QN32_ROSCH)

HSP 1 Score: 64.3 bits (155), Expect = 2.180e-9
Identity = 48/132 (36.36%), Postives = 68/132 (51.52%), Query Frame = 1
Query:   25 CGWFGVSCNGDGVVTSLALPSNNLV--GSIPPS--LASLRSLTSLNVSDNRGLSGVLLYPFSWASFPAMEVLDFSNTAYLVSIVDILLPPKLKILRLSGSPVHGEVP----RLPDSLVDFRVAQTQVTGAVP 396
            C W G++CN DG VT L LPSN L   G+I PS  LA+L  LT LN+S N  LSG L     + S   +E+LD S       +   L    ++++ LS + +HG V     +   +L  F V+    +G +P
Sbjct:   53 CNWQGITCNRDGWVTHLQLPSNGLKLKGAIFPSSSLANLTHLTHLNLSHN-SLSGSLDQTEFFLSLNDLEILDLSYNLLFGVLPSSLPSSHIRMVDLSSNRLHGAVSSSFFQQAWNLTSFNVSNNTFSGPIP 183          
BLAST of mRNA_M-pyrifera_M_contig127325.5503.1 vs. uniprot
Match: A0A314YP24_PRUYE (LRRNT_2 domain-containing protein n=2 Tax=Prunus TaxID=3754 RepID=A0A314YP24_PRUYE)

HSP 1 Score: 62.4 bits (150), Expect = 1.020e-8
Identity = 42/129 (32.56%), Postives = 62/129 (48.06%), Query Frame = 1
Query:   25 CGWFGVSCNGDGVVTSLALPSNNLVGSIPP-SLASLRSLTSLNVSDNRGLSGVLLYPFSWASFPAMEVLDFSNTAYLVSIVDILLPPKLKILRLSGSPVHGEVPRL----PDSLVDFRVAQTQVTGAVP 396
            C W G+SCN DG VT L LPS  + G   P SLA+L  LT +N+S N  L G L+    +    ++EVLD S+      +   L    +  + L  + +HG +P         L  F  +    +G++P
Sbjct:   52 CHWSGISCNQDGWVTHLILPSKGIKGGFKPASLANLTHLTHINLSHN-SLYGSLVQTELFLPLKSLEVLDLSHNLLSGELPSSLPSNNILTVDLXXNHLHGAIPPTFFHGAWHLTSFNASNNTFSGSIP 179          
BLAST of mRNA_M-pyrifera_M_contig127325.5503.1 vs. uniprot
Match: A0A2P6QN86_ROSCH (Putative non-specific serine/threonine protein kinase n=1 Tax=Rosa chinensis TaxID=74649 RepID=A0A2P6QN86_ROSCH)

HSP 1 Score: 62.4 bits (150), Expect = 1.020e-8
Identity = 49/133 (36.84%), Postives = 70/133 (52.63%), Query Frame = 1
Query:   25 CGWFGVSCNGDGVVTSLALPSNNLV--GSIPPS--LASLRSLTSLNVSDNRGLSGVLLYPFSWASFPAMEVLDFSNTAYLVSIVDILLPPK-LKILRLSGSPVHGEVP----RLPDSLVDFRVAQTQVTGAVP 396
            C W G++CN DG VT L LPS  L   G I PS  LA+L  LT LN+S N  LSG L     + S   +E+LD S    L+ ++   LP   ++++ LS + +HG V     +   +L  F V+    +G +P
Sbjct:   53 CNWEGITCNRDGWVTHLQLPSKGLKLKGGIFPSSSLANLTHLTHLNLSHN-SLSGSLDQTEFFLSLNDLEILDLSYNL-LIGVLPSSLPSSHIRMVDLSSNRLHGAVSSSFFQQAWNLTSFNVSNNTFSGPIP 183          
BLAST of mRNA_M-pyrifera_M_contig127325.5503.1 vs. uniprot
Match: UPI000D091F63 (receptor-like protein 2 n=1 Tax=Rosa chinensis TaxID=74649 RepID=UPI000D091F63)

HSP 1 Score: 62.4 bits (150), Expect = 1.050e-8
Identity = 49/133 (36.84%), Postives = 70/133 (52.63%), Query Frame = 1
Query:   25 CGWFGVSCNGDGVVTSLALPSNNLV--GSIPPS--LASLRSLTSLNVSDNRGLSGVLLYPFSWASFPAMEVLDFSNTAYLVSIVDILLPPK-LKILRLSGSPVHGEVP----RLPDSLVDFRVAQTQVTGAVP 396
            C W G++CN DG VT L LPS  L   G I PS  LA+L  LT LN+S N  LSG L     + S   +E+LD S    L+ ++   LP   ++++ LS + +HG V     +   +L  F V+    +G +P
Sbjct:   53 CNWEGITCNRDGWVTHLQLPSKGLKLKGGIFPSSSLANLTHLTHLNLSHN-SLSGSLDQTEFFLSLNDLEILDLSYNL-LIGVLPSSLPSSHIRMVDLSSNRLHGAVSSSFFQQAWNLTSFNVSNNTFSGPIP 183          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig127325.5503.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2G9H886_9LAMI1.010e-1040.78Serine/threonine protein kinase n=1 Tax=Handroanth... [more]
A0A314XJU8_PRUYE1.220e-1036.09Receptor-like protein 2 n=1 Tax=Prunus yedoensis v... [more]
M5W258_PRUPE2.470e-1036.09Uncharacterized protein (Fragment) n=1 Tax=Prunus ... [more]
A0A6P5SE81_PRUAV6.280e-1035.34receptor-like protein 2 n=6 Tax=Prunus TaxID=3754 ... [more]
M5WGT9_PRUPE1.510e-939.85LRRNT_2 domain-containing protein n=1 Tax=Prunus p... [more]
A0A251PLE4_PRUPE1.590e-939.85LRRNT_2 domain-containing protein n=9 Tax=Prunus T... [more]
A0A2P6QN32_ROSCH2.180e-936.36Putative non-specific serine/threonine protein kin... [more]
A0A314YP24_PRUYE1.020e-832.56LRRNT_2 domain-containing protein n=2 Tax=Prunus T... [more]
A0A2P6QN86_ROSCH1.020e-836.84Putative non-specific serine/threonine protein kin... [more]
UPI000D091F631.050e-836.84receptor-like protein 2 n=1 Tax=Rosa chinensis Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig127325contigM-pyrifera_M_contig127325:85..480 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score66.6
Seed ortholog evalue9.8e-09
Seed eggNOG ortholog3760.EMJ07804
Hectar predicted targeting categoryother localisation
GOsGO:0002376,GO:0006950,GO:0006952,GO:0006955,GO:0008150,GO:0009605,GO:0009607,GO:0009620,GO:0009888,GO:0010073,GO:0032501,GO:0032502,GO:0043207,GO:0045087,GO:0048507,GO:0048856,GO:0050832,GO:0050896,GO:0051704,GO:0051707,GO:0098542
EggNOG free text desc.Receptor-like protein 2
EggNOG OGs37RG7@33090,3GAIY@35493,4JKRN@91835,COG4886@1,KOG0619@2759
COG Functional cat.T
Best tax levelfabids
Best eggNOG OGNA|NA|NA
Exons1
Model size396
Cds size396
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815787.3697057-CDS-M-pyrifera_M_contig127325:84..4801622815787.3697057-CDS-M-pyrifera_M_contig127325:84..480Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig127325 85..480 -
1692277569.403052-CDS-M-pyrifera_M_contig127325:84..4801692277569.403052-CDS-M-pyrifera_M_contig127325:84..480Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig127325 85..480 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig127325.5503.1prot_M-pyrifera_M_contig127325.5503.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig127325 85..480 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig127325.5503.1

>prot_M-pyrifera_M_contig127325.5503.1 ID=prot_M-pyrifera_M_contig127325.5503.1|Name=mRNA_M-pyrifera_M_contig127325.5503.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=132bp
NKGVEKSPCGWFGVSCNGDGVVTSLALPSNNLVGSIPPSLASLRSLTSLN
VSDNRGLSGVLLYPFSWASFPAMEVLDFSNTAYLVSIVDILLPPKLKILR
LSGSPVHGEVPRLPDSLVDFRVAQTQVTGAVP
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mRNA from alignment at M-pyrifera_M_contig127325:85..480-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig127325.5503.1 ID=mRNA_M-pyrifera_M_contig127325.5503.1|Name=mRNA_M-pyrifera_M_contig127325.5503.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=396bp|location=Sequence derived from alignment at M-pyrifera_M_contig127325:85..480- (Macrocystis pyrifera P11B4 male)
AACAAGGGGGTGGAAAAGTCGCCATGTGGATGGTTTGGAGTCAGTTGCAA CGGAGATGGTGTTGTAACGTCACTCGCGCTTCCTTCCAATAACCTTGTAG GGTCTATACCTCCTTCTCTTGCATCATTACGCTCGTTGACATCCCTGAAT GTTTCTGACAATCGCGGATTGTCCGGTGTTTTGCTCTATCCATTTTCTTG GGCAAGTTTTCCAGCGATGGAGGTACTCGATTTTTCCAATACTGCGTACC TCGTGTCAATTGTTGACATACTCCTTCCCCCAAAGTTGAAAATTCTTCGC TTGAGCGGATCTCCAGTCCATGGAGAGGTTCCAAGATTACCTGATTCGTT GGTGGATTTCAGGGTAGCACAAACCCAAGTAACAGGTGCGGTGCCA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig127325:85..480-

>mRNA_M-pyrifera_M_contig127325.5503.1 ID=mRNA_M-pyrifera_M_contig127325.5503.1|Name=mRNA_M-pyrifera_M_contig127325.5503.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=792bp|location=Sequence derived from alignment at M-pyrifera_M_contig127325:85..480- (Macrocystis pyrifera P11B4 male)
AACAAGGGGGTGGAAAAGTCGCCATGTGGATGGTTTGGAGTCAGTTGCAA
CGGAGATGGTGTTGTAACGTCACTCGCGCTTCCTTCCAATAACCTTGTAG
GGTCTATACCTCCTTCTCTTGCATCATTACGCTCGTTGACATCCCTGAAT
GTTTCTGACAATCGCGGATTGTCCGGTGTTTTGCTCTATCCATTTTCTTG
GGCAAGTTTTCCAGCGATGGAGGTACTCGATTTTTCCAATACTGCGTACC
TCGTGTCAATTGTTGACATACTCCTTCCCCCAAAGTTGAAAATTCTTCGC
TTGAGCGGATCTCCAGTCCATGGAGAGGTTCCAAGATTACCTGATTCGTT
GGTGGATTTCAGGGTAGCACAAACCCAAGTAACAGGTGCGGTGCCAAACA
AGGGGGTGGAAAAGTCGCCATGTGGATGGTTTGGAGTCAGTTGCAACGGA
GATGGTGTTGTAACGTCACTCGCGCTTCCTTCCAATAACCTTGTAGGGTC
TATACCTCCTTCTCTTGCATCATTACGCTCGTTGACATCCCTGAATGTTT
CTGACAATCGCGGATTGTCCGGTGTTTTGCTCTATCCATTTTCTTGGGCA
AGTTTTCCAGCGATGGAGGTACTCGATTTTTCCAATACTGCGTACCTCGT
GTCAATTGTTGACATACTCCTTCCCCCAAAGTTGAAAATTCTTCGCTTGA
GCGGATCTCCAGTCCATGGAGAGGTTCCAAGATTACCTGATTCGTTGGTG
GATTTCAGGGTAGCACAAACCCAAGTAACAGGTGCGGTGCCA
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