mRNA_M-pyrifera_M_contig127318.5500.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig127318.5500.1
Unique NamemRNA_M-pyrifera_M_contig127318.5500.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig127318.5500.1 vs. uniprot
Match: D1J767_ECTSI (50S ribosomal protein L19, chloroplastic n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D1J767_ECTSI)

HSP 1 Score: 87.8 bits (216), Expect = 4.380e-21
Identity = 47/49 (95.92%), Postives = 47/49 (95.92%), Query Frame = 1 
Query:    1 GIERAFLVNSPKLASIETLKSARVRKSKLYYLRNIIGKAGRLKQRVNKK 147
            GIERAFLVNSPKLASIE LKSARVRKSKLYYLRNIIGKAGRLKQRV KK
Sbjct:   82 GIERAFLVNSPKLASIEILKSARVRKSKLYYLRNIIGKAGRLKQRVKKK 130
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BLAST of mRNA_M-pyrifera_M_contig127318.5500.1 vs. uniprot
Match: A0A6B7EVN0_9PHAE (50S ribosomal protein L19 n=1 Tax=Cladosiphon okamuranus TaxID=309737 RepID=A0A6B7EVN0_9PHAE)

HSP 1 Score: 83.2 bits (204), Expect = 2.890e-19
Identity = 43/49 (87.76%), Postives = 45/49 (91.84%), Query Frame = 1 
Query:    1 GIERAFLVNSPKLASIETLKSARVRKSKLYYLRNIIGKAGRLKQRVNKK 147
            G+ERAFLVNSPK ASIE LKS+RV KSKLYYLRNIIGKAGRLKQR NKK
Sbjct:   82 GVERAFLVNSPKFASIEVLKSSRVSKSKLYYLRNIIGKAGRLKQRFNKK 130
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BLAST of mRNA_M-pyrifera_M_contig127318.5500.1 vs. uniprot
Match: A0A1I9LVW4_9PHAE (50S ribosomal protein L19, chloroplastic n=1 Tax=Pleurocladia lacustris TaxID=246121 RepID=A0A1I9LVW4_9PHAE)

HSP 1 Score: 79.7 bits (195), Expect = 8.150e-18
Identity = 39/49 (79.59%), Postives = 45/49 (91.84%), Query Frame = 1 
Query:    1 GIERAFLVNSPKLASIETLKSARVRKSKLYYLRNIIGKAGRLKQRVNKK 147
            G+ERAFLVNSPK ASIE +KS+R+R+SKLYYLRNIIGKAGRLK+R  KK
Sbjct:   90 GVERAFLVNSPKFASIEVIKSSRIRRSKLYYLRNIIGKAGRLKERFKKK 138
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BLAST of mRNA_M-pyrifera_M_contig127318.5500.1 vs. uniprot
Match: A0A7T8JK70_SCYLO (50S ribosomal protein L19, chloroplastic n=5 Tax=Scytosiphonaceae TaxID=2891 RepID=A0A7T8JK70_SCYLO)

HSP 1 Score: 77.0 bits (188), Expect = 1.180e-16
Identity = 40/49 (81.63%), Postives = 42/49 (85.71%), Query Frame = 1 
Query:    1 GIERAFLVNSPKLASIETLKSARVRKSKLYYLRNIIGKAGRLKQRVNKK 147
            G+ERAFLVNSPK  SIE LKSARV KSKLYYLRNIIGKAGRLKQ   K+
Sbjct:  100 GVERAFLVNSPKFVSIEVLKSARVSKSKLYYLRNIIGKAGRLKQSFKKR 148
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BLAST of mRNA_M-pyrifera_M_contig127318.5500.1 vs. uniprot
Match: A0A8F0JYX3_9PHAE (Ribosomal protein L19 n=1 Tax=Chorda asiatica TaxID=1281577 RepID=A0A8F0JYX3_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 2.010e-14
Identity = 36/49 (73.47%), Postives = 41/49 (83.67%), Query Frame = 1 
Query:    1 GIERAFLVNSPKLASIETLKSARVRKSKLYYLRNIIGKAGRLKQRVNKK 147
            G+ER FLV+SPKL SIE +KS+RVR+SKLYYLRNIIGK  RLKQR   K
Sbjct:   82 GVERKFLVHSPKLESIEVIKSSRVRRSKLYYLRNIIGKGSRLKQRFRTK 130
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BLAST of mRNA_M-pyrifera_M_contig127318.5500.1 vs. uniprot
Match: A0A2U9NP33_9STRA (50S ribosomal protein L19, chloroplastic n=1 Tax=Guinardia striata TaxID=1514137 RepID=A0A2U9NP33_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 1.810e-13
Identity = 33/47 (70.21%), Postives = 42/47 (89.36%), Query Frame = 1 
Query:    1 GIERAFLVNSPKLASIETLKSARVRKSKLYYLRNIIGKAGRLKQRVN 141
            GIER FLV+SPK+ASI+ L+S++VR++KLYYLRN+ GKA RLKQR N
Sbjct:   74 GIERVFLVHSPKVASIQVLRSSKVRRAKLYYLRNLRGKASRLKQRFN 120
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BLAST of mRNA_M-pyrifera_M_contig127318.5500.1 vs. uniprot
Match: A0A514CQ32_9STRA (50S ribosomal protein L19, chloroplastic n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A514CQ32_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 7.830e-13
Identity = 31/48 (64.58%), Postives = 42/48 (87.50%), Query Frame = 1 
Query:    1 GIERAFLVNSPKLASIETLKSARVRKSKLYYLRNIIGKAGRLKQRVNK 144
            G+ER FLVNSPK+ +IE ++S++VR+SKLYYLR++ GKA RLKQ+ NK
Sbjct:   76 GVERCFLVNSPKIKTIELIRSSKVRRSKLYYLRDLAGKATRLKQKFNK 123
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BLAST of mRNA_M-pyrifera_M_contig127318.5500.1 vs. uniprot
Match: A0A516ZAD0_9STRA (50S ribosomal protein L19, chloroplastic n=1 Tax=Pseudopedinella elastica TaxID=35684 RepID=A0A516ZAD0_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 8.200e-13
Identity = 33/47 (70.21%), Postives = 40/47 (85.11%), Query Frame = 1 
Query:    1 GIERAFLVNSPKLASIETLKSARVRKSKLYYLRNIIGKAGRLKQRVN 141
            GIER FL++SPK+ SI+ L SA+VR+SKLYYLRN+ GKA RLKQR N
Sbjct:   79 GIERCFLIHSPKINSIQILSSAKVRRSKLYYLRNLSGKATRLKQRFN 125
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BLAST of mRNA_M-pyrifera_M_contig127318.5500.1 vs. uniprot
Match: A0A0R6LUN6_UNDPI (50S ribosomal protein L19, chloroplastic n=25 Tax=Laminariales TaxID=2886 RepID=A0A0R6LUN6_UNDPI)

HSP 1 Score: 66.2 bits (160), Expect = 1.240e-12
Identity = 32/49 (65.31%), Postives = 40/49 (81.63%), Query Frame = 1 
Query:    1 GIERAFLVNSPKLASIETLKSARVRKSKLYYLRNIIGKAGRLKQRVNKK 147
            G+ER FL++SPK  SIE +KS+RVR+SKLYYLR+I+GK  RLKQR   K
Sbjct:   80 GVERNFLIHSPKFESIEVIKSSRVRRSKLYYLRSIVGKGSRLKQRFRTK 128
[Close]
BLAST of mRNA_M-pyrifera_M_contig127318.5500.1 vs. uniprot
Match: A0A8F0F7M0_9PHAE (Ribosomal protein L19 n=2 Tax=Laminariales TaxID=2886 RepID=A0A8F0F7M0_9PHAE)

HSP 1 Score: 66.2 bits (160), Expect = 1.300e-12
Identity = 32/49 (65.31%), Postives = 40/49 (81.63%), Query Frame = 1 
Query:    1 GIERAFLVNSPKLASIETLKSARVRKSKLYYLRNIIGKAGRLKQRVNKK 147
            G+ER FL++SPK  SIE +KS+RVR+SKLYYLR+I+GK  RLKQR   K
Sbjct:   82 GVERRFLIHSPKFESIEIIKSSRVRRSKLYYLRSIVGKGSRLKQRFRTK 130
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig127318.5500.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D1J767_ECTSI4.380e-2195.9250S ribosomal protein L19, chloroplastic n=2 Tax=E... [more]
A0A6B7EVN0_9PHAE2.890e-1987.7650S ribosomal protein L19 n=1 Tax=Cladosiphon okam... [more]
A0A1I9LVW4_9PHAE8.150e-1879.5950S ribosomal protein L19, chloroplastic n=1 Tax=P... [more]
A0A7T8JK70_SCYLO1.180e-1681.6350S ribosomal protein L19, chloroplastic n=5 Tax=S... [more]
A0A8F0JYX3_9PHAE2.010e-1473.47Ribosomal protein L19 n=1 Tax=Chorda asiatica TaxI... [more]
A0A2U9NP33_9STRA1.810e-1370.2150S ribosomal protein L19, chloroplastic n=1 Tax=G... [more]
A0A514CQ32_9STRA7.830e-1364.5850S ribosomal protein L19, chloroplastic n=1 Tax=R... [more]
A0A516ZAD0_9STRA8.200e-1370.2150S ribosomal protein L19, chloroplastic n=1 Tax=P... [more]
A0A0R6LUN6_UNDPI1.240e-1265.3150S ribosomal protein L19, chloroplastic n=25 Tax=... [more]
A0A8F0F7M0_9PHAE1.300e-1265.31Ribosomal protein L19 n=2 Tax=Laminariales TaxID=2... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig127318contigM-pyrifera_M_contig127318:1..150 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score88.2
Seed ortholog evalue1.2e-15
Seed eggNOG ortholog2880.D1J767
Preferred namerpl19
KEGG koko:K02884
KEGG Pathwayko03010,map03010
KEGG ModuleM00178
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000313,GO:0000315,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0005761,GO:0005762,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009507,GO:0009536,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0031974,GO:0032543,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0070013,GO:0071704,GO:0098798,GO:0140053,GO:1901564,GO:1901566,GO:1901576,GO:1990904
EggNOG free text desc.structural constituent of ribosome
EggNOG OGsCOG0335@1,KOG1698@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Exons1
Model size150
Cds size150
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815787.2766943-CDS-M-pyrifera_M_contig127318:0..1501622815787.2766943-CDS-M-pyrifera_M_contig127318:0..150Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig127318 1..150 +
1692277569.369894-CDS-M-pyrifera_M_contig127318:0..1501692277569.369894-CDS-M-pyrifera_M_contig127318:0..150Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig127318 1..150 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig127318.5500.1prot_M-pyrifera_M_contig127318.5500.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig127318 1..150 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig127318.5500.1

>prot_M-pyrifera_M_contig127318.5500.1 ID=prot_M-pyrifera_M_contig127318.5500.1|Name=mRNA_M-pyrifera_M_contig127318.5500.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=50bp
GIERAFLVNSPKLASIETLKSARVRKSKLYYLRNIIGKAGRLKQRVNKK*
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mRNA from alignment at M-pyrifera_M_contig127318:1..150+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig127318.5500.1 ID=mRNA_M-pyrifera_M_contig127318.5500.1|Name=mRNA_M-pyrifera_M_contig127318.5500.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=150bp|location=Sequence derived from alignment at M-pyrifera_M_contig127318:1..150+ (Macrocystis pyrifera P11B4 male)
GGAATTGAAAGAGCCTTCTTAGTAAATTCACCTAAATTAGCTTCCATTGA
AACTCTTAAATCAGCTCGTGTAAGGAAATCAAAATTATATTACTTGCGTA
ATATCATAGGTAAAGCTGGTCGTTTAAAACAAAGGGTTAATAAAAAATAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig127318:1..150+

>mRNA_M-pyrifera_M_contig127318.5500.1 ID=mRNA_M-pyrifera_M_contig127318.5500.1|Name=mRNA_M-pyrifera_M_contig127318.5500.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=300bp|location=Sequence derived from alignment at M-pyrifera_M_contig127318:1..150+ (Macrocystis pyrifera P11B4 male)
GGAATTGAAAGAGCCTTCTTAGTAAATTCACCTAAATTAGCTTCCATTGA
AACTCTTAAATCAGCTCGTGTAAGGAAATCAAAATTATATTACTTGCGTA
ATATCATAGGTAAAGCTGGTCGTTTAAAACAAAGGGTTAATAAAAAATAA
GGAATTGAAAGAGCCTTCTTAGTAAATTCACCTAAATTAGCTTCCATTGA
AACTCTTAAATCAGCTCGTGTAAGGAAATCAAAATTATATTACTTGCGTA
ATATCATAGGTAAAGCTGGTCGTTTAAAACAAAGGGTTAATAAAAAATAA
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