mRNA_M-pyrifera_M_contig127100.5460.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig127100.5460.1
Unique NamemRNA_M-pyrifera_M_contig127100.5460.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig127100.5460.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig127100contigM-pyrifera_M_contig127100:2..448 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score70.1
Seed ortholog evalue1e-09
Seed eggNOG ortholog469383.Cwoe_4098
Preferred namemdlC
KEGG rclassRC00027,RC00106,RC00595,RC01192,RC02744,RC02893
KEGG koko:K01576,ko:K01652
KEGG ReactionR00006,R00014,R00226,R01764,R02672,R03050,R04672,R04673,R08648
KEGG Pathwayko00290,ko00627,ko00650,ko00660,ko00770,ko01100,ko01110,ko01120,ko01130,ko01210,ko01230,map00290,map00627,map00650,map00660,map00770,map01100,map01110,map01120,map01130,map01210,map01230
KEGG ModuleM00019,M00570
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
EggNOG OGs2IE0K@201174,COG0028@1,COG0028@2
EC2.2.1.6,4.1.1.7
COG Functional cat.EH
Best tax levelActinobacteria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons1
Model size447
Cds size447
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815785.1115022-CDS-M-pyrifera_M_contig127100:1..4481622815785.1115022-CDS-M-pyrifera_M_contig127100:1..448Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig127100 2..448 +
1692277568.2656355-CDS-M-pyrifera_M_contig127100:1..4481692277568.2656355-CDS-M-pyrifera_M_contig127100:1..448Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig127100 2..448 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig127100.5460.1prot_M-pyrifera_M_contig127100.5460.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig127100 2..448 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig127100.5460.1

>prot_M-pyrifera_M_contig127100.5460.1 ID=prot_M-pyrifera_M_contig127100.5460.1|Name=mRNA_M-pyrifera_M_contig127100.5460.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=149bp
TDQPIGPAATVSSVSAGWTAAGRPPSGPAILALDVLFQEEPVDDPQSLLA
GVVAGNEVEIGPDPSAVATIARSLSHAKSPVIVTDRPLDRRGIDAIEKIV
RRTGAALVEFGGGVSFDVGHEHDCSDRAADVFGLADFIMFVDVRDPFFR
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mRNA from alignment at M-pyrifera_M_contig127100:2..448+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig127100.5460.1 ID=mRNA_M-pyrifera_M_contig127100.5460.1|Name=mRNA_M-pyrifera_M_contig127100.5460.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=447bp|location=Sequence derived from alignment at M-pyrifera_M_contig127100:2..448+ (Macrocystis pyrifera P11B4 male)
ACCGACCAGCCGATCGGGCCAGCCGCGACTGTCTCCTCAGTGTCGGCAGG
ATGGACCGCGGCTGGCCGGCCGCCGTCGGGGCCGGCCATCCTCGCTCTCG
ACGTTCTCTTCCAGGAGGAGCCGGTCGATGACCCGCAGAGCTTGCTCGCA
GGAGTCGTCGCCGGCAACGAGGTGGAGATCGGTCCTGATCCCTCGGCCGT
CGCCACCATCGCTCGGTCACTGTCCCACGCCAAGTCCCCGGTGATCGTCA
CCGATCGACCGCTCGATCGACGCGGAATCGATGCGATCGAAAAGATCGTC
CGCCGGACCGGCGCAGCGCTGGTGGAGTTCGGTGGAGGTGTGAGCTTCGA
TGTCGGCCACGAGCACGATTGCAGCGATCGCGCCGCGGACGTGTTCGGGC
TGGCCGACTTCATCATGTTCGTCGACGTGAGGGATCCGTTCTTCCGT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig127100:2..448+

>mRNA_M-pyrifera_M_contig127100.5460.1 ID=mRNA_M-pyrifera_M_contig127100.5460.1|Name=mRNA_M-pyrifera_M_contig127100.5460.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=894bp|location=Sequence derived from alignment at M-pyrifera_M_contig127100:2..448+ (Macrocystis pyrifera P11B4 male)
ACCGACCAGCCGATCGGGCCAGCCGCGACTGTCTCCTCAGTGTCGGCAGG
ATGGACCGCGGCTGGCCGGCCGCCGTCGGGGCCGGCCATCCTCGCTCTCG
ACGTTCTCTTCCAGGAGGAGCCGGTCGATGACCCGCAGAGCTTGCTCGCA
GGAGTCGTCGCCGGCAACGAGGTGGAGATCGGTCCTGATCCCTCGGCCGT
CGCCACCATCGCTCGGTCACTGTCCCACGCCAAGTCCCCGGTGATCGTCA
CCGATCGACCGCTCGATCGACGCGGAATCGATGCGATCGAAAAGATCGTC
CGCCGGACCGGCGCAGCGCTGGTGGAGTTCGGTGGAGGTGTGAGCTTCGA
TGTCGGCCACGAGCACGATTGCAGCGATCGCGCCGCGGACGTGTTCGGGC
TGGCCGACTTCATCATGTTCGTCGACGTGAGGGATCCGTTCTTCCGTACC
GACCAGCCGATCGGGCCAGCCGCGACTGTCTCCTCAGTGTCGGCAGGATG
GACCGCGGCTGGCCGGCCGCCGTCGGGGCCGGCCATCCTCGCTCTCGACG
TTCTCTTCCAGGAGGAGCCGGTCGATGACCCGCAGAGCTTGCTCGCAGGA
GTCGTCGCCGGCAACGAGGTGGAGATCGGTCCTGATCCCTCGGCCGTCGC
CACCATCGCTCGGTCACTGTCCCACGCCAAGTCCCCGGTGATCGTCACCG
ATCGACCGCTCGATCGACGCGGAATCGATGCGATCGAAAAGATCGTCCGC
CGGACCGGCGCAGCGCTGGTGGAGTTCGGTGGAGGTGTGAGCTTCGATGT
CGGCCACGAGCACGATTGCAGCGATCGCGCCGCGGACGTGTTCGGGCTGG
CCGACTTCATCATGTTCGTCGACGTGAGGGATCCGTTCTTCCGT
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