mRNA_M-pyrifera_M_contig127041.5438.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig127041.5438.1
Unique NamemRNA_M-pyrifera_M_contig127041.5438.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig127041.5438.1 vs. uniprot
Match: A0A3D2IKS3_9BACT (Uncharacterized protein n=1 Tax=Balneola sp. TaxID=2024824 RepID=A0A3D2IKS3_9BACT)

HSP 1 Score: 132 bits (331), Expect = 7.920e-38
Identity = 56/97 (57.73%), Postives = 75/97 (77.32%), Query Frame = 1
Query:    1 WSSKTEYEKGFQFFGTILGDHSKTAINTVLNAGTTCGICTNIFSLGFPPKYIPSFQWMGQENTVAYEFDKAISAMRAMMTRRNIELSDDYLQMMKTI 291
            W +K  Y+ GFQFFGT++GDHSKT+IN++L+ GTTCG+ +NIF+  FPPKYIPSF W+  E    + FDKA+  M+AMM RRN+ELS++Y  MM+ I
Sbjct:   13 WETKEFYKVGFQFFGTVMGDHSKTSINSMLSTGTTCGVSSNIFTSAFPPKYIPSFTWLDGEKNPEFRFDKALEVMKAMMARRNVELSEEYEHMMRYI 109          
BLAST of mRNA_M-pyrifera_M_contig127041.5438.1 vs. uniprot
Match: A0A2D8CFX0_9BACT (Glucose-1-phosphate thymidylyltransferase n=1 Tax=Balneola sp. TaxID=2024824 RepID=A0A2D8CFX0_9BACT)

HSP 1 Score: 135 bits (341), Expect = 2.700e-36
Identity = 62/98 (63.27%), Postives = 73/98 (74.49%), Query Frame = 1
Query:    1 WSSKTEYEKGFQFFGTILGDHSKTAINTVLNAGTTCGICTNIFSLGFPPKYIPSFQWMGQENTVAYEFDKAISAMRAMMTRRNIELSDDYLQMMKTIS 294
            W +K E E G QF GTI+GDHSKTAINT+LN GT CG+ +NIF  GFPPKYIPSF W+G E    Y+FDKA+ AM AMM RR ++LSD Y  MM+ IS
Sbjct:  297 WETKKEIETGAQFLGTIMGDHSKTAINTMLNTGTICGVSSNIFMSGFPPKYIPSFSWVGAEEYGEYQFDKAVEAMHAMMKRRTVDLSDAYKNMMQHIS 394          
BLAST of mRNA_M-pyrifera_M_contig127041.5438.1 vs. uniprot
Match: A0A2D9FQW7_9BACT (Glucose-1-phosphate thymidylyltransferase n=2 Tax=Balneolaceae TaxID=1813606 RepID=A0A2D9FQW7_9BACT)

HSP 1 Score: 132 bits (333), Expect = 4.170e-35
Identity = 61/94 (64.89%), Postives = 71/94 (75.53%), Query Frame = 1
Query:    1 WSSKTEYEKGFQFFGTILGDHSKTAINTVLNAGTTCGICTNIFSLGFPPKYIPSFQWMGQENTVAYEFDKAISAMRAMMTRRNIELSDDYLQMM 282
            W S+ + E G QF GT++ DHSKTAINT+LN GT CG+ +NIF  GFPPKYIPSF W+G E+   Y+FDKAI AMRAMM RR IELSD Y  MM
Sbjct:  299 WESRKDIETGMQFLGTVMADHSKTAINTMLNTGTICGVSSNIFMGGFPPKYIPSFAWVGSEDYGIYKFDKAIEAMRAMMKRREIELSDAYKAMM 392          
BLAST of mRNA_M-pyrifera_M_contig127041.5438.1 vs. uniprot
Match: A0A3F3HYW1_9BACT (Glucose-1-phosphate thymidylyltransferase n=3 Tax=Bacteroidetes/Chlorobi group TaxID=68336 RepID=A0A3F3HYW1_9BACT)

HSP 1 Score: 132 bits (331), Expect = 7.790e-35
Identity = 56/97 (57.73%), Postives = 75/97 (77.32%), Query Frame = 1
Query:    1 WSSKTEYEKGFQFFGTILGDHSKTAINTVLNAGTTCGICTNIFSLGFPPKYIPSFQWMGQENTVAYEFDKAISAMRAMMTRRNIELSDDYLQMMKTI 291
            W +K  Y+ GFQFFGT++GDHSKT+IN++L+ GTTCG+ +NIF+  FPPKYIPSF W+  E    + FDKA+  M+AMM RRN+ELS++Y  MM+ I
Sbjct:  294 WETKEFYKVGFQFFGTVMGDHSKTSINSMLSTGTTCGVSSNIFTSAFPPKYIPSFTWLDGEKNPEFRFDKALEVMKAMMARRNVELSEEYEHMMRYI 390          
BLAST of mRNA_M-pyrifera_M_contig127041.5438.1 vs. uniprot
Match: A0A521FAA5_9BACT (UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase n=1 Tax=Gracilimonas mengyeensis TaxID=1302730 RepID=A0A521FAA5_9BACT)

HSP 1 Score: 129 bits (323), Expect = 1.310e-33
Identity = 58/99 (58.59%), Postives = 74/99 (74.75%), Query Frame = 1
Query:    1 WSSKTEYEKGFQFFGTILGDHSKTAINTVLNAGTTCGICTNIFSLGFPPKYIPSFQWMGQENTVAYEFDKAISAMRAMMTRRNIELSDDYLQMMKTISK 297
            W+SK E E   QF GT++GDHSKTAINT+LN GT CG+ +NIF   FPPKYIPSF W+G+ +   Y+FDKA+ AMRAMM RR+ E++D Y  MM+ + K
Sbjct:  304 WASKEEIETEAQFLGTVMGDHSKTAINTMLNTGTICGVSSNIFMANFPPKYIPSFSWVGETDYSVYKFDKALEAMRAMMKRRDKEVTDAYAAMMEYLFK 402          
BLAST of mRNA_M-pyrifera_M_contig127041.5438.1 vs. uniprot
Match: A0A3M8G2G5_9BACT (Glucose-1-phosphate thymidylyltransferase n=1 Tax=Balneola sp. TaxID=2024824 RepID=A0A3M8G2G5_9BACT)

HSP 1 Score: 127 bits (320), Expect = 3.390e-33
Identity = 56/94 (59.57%), Postives = 70/94 (74.47%), Query Frame = 1
Query:    1 WSSKTEYEKGFQFFGTILGDHSKTAINTVLNAGTTCGICTNIFSLGFPPKYIPSFQWMGQENTVAYEFDKAISAMRAMMTRRNIELSDDYLQMM 282
            W +K  Y+ G QF GTI+GDHSKTAINT LN GT  G+C+NIF  GFPPKYIPSF W G++    Y+F+KA+ AM AMM RR I+L+ +Y +MM
Sbjct:  298 WRTKQLYDDGVQFLGTIMGDHSKTAINTQLNTGTVIGVCSNIFHSGFPPKYIPSFSWSGKDEFQVYQFEKALEAMSAMMKRRGIDLTSEYQEMM 391          
BLAST of mRNA_M-pyrifera_M_contig127041.5438.1 vs. uniprot
Match: A0A2A2GB90_9BACT (Glucose-1-phosphate thymidylyltransferase n=1 Tax=Aliifodinibius sp. WN023 TaxID=2032627 RepID=A0A2A2GB90_9BACT)

HSP 1 Score: 127 bits (318), Expect = 6.740e-33
Identity = 59/97 (60.82%), Postives = 69/97 (71.13%), Query Frame = 1
Query:    1 WSSKTEYEKGFQFFGTILGDHSKTAINTVLNAGTTCGICTNIFSLGFPPKYIPSFQWMGQENTVAYEFDKAISAMRAMMTRRNIELSDDYLQMMKTI 291
            WS+  E E   QFFGT++GDHSKTAINT LN GT CG+  NIFS  FPPK IPSF W+G      Y  DKA+ AM AMM RR+I L+++Y QMMKTI
Sbjct:  297 WSNSQEIETNQQFFGTVMGDHSKTAINTQLNTGTICGVSCNIFSDDFPPKLIPSFSWVGSNVIQTYRIDKALEAMEAMMARRDISLNEEYKQMMKTI 393          
BLAST of mRNA_M-pyrifera_M_contig127041.5438.1 vs. uniprot
Match: UPI00083FC3F8 (hypothetical protein n=1 Tax=Rhodohalobacter halophilus TaxID=1812810 RepID=UPI00083FC3F8)

HSP 1 Score: 126 bits (317), Expect = 1.020e-32
Identity = 54/97 (55.67%), Postives = 72/97 (74.23%), Query Frame = 1
Query:    1 WSSKTEYEKGFQFFGTILGDHSKTAINTVLNAGTTCGICTNIFSLGFPPKYIPSFQWMGQENTVAYEFDKAISAMRAMMTRRNIELSDDYLQMMKTI 291
            W+S  E + G QF GTI+GDHSKT IN++LN GT CG+C N+FS G+PPK+IPSF W+  +N V Y F+KAI AM  MM RRN++L+  Y +MM+ +
Sbjct:  304 WTSGKEIDSGQQFIGTIMGDHSKTGINSMLNTGTLCGVCCNLFSDGYPPKFIPSFSWVSGQNIVPYHFEKAIDAMEKMMDRRNVKLTPSYKKMMQAL 400          
BLAST of mRNA_M-pyrifera_M_contig127041.5438.1 vs. uniprot
Match: A0A6A8Q1N5_9BACT (Glucose-1-phosphate thymidylyltransferase n=1 Tax=Balneolaceae bacterium TaxID=2053516 RepID=A0A6A8Q1N5_9BACT)

HSP 1 Score: 125 bits (314), Expect = 2.390e-32
Identity = 58/99 (58.59%), Postives = 66/99 (66.67%), Query Frame = 1
Query:    1 WSSKTEYEKGFQFFGTILGDHSKTAINTVLNAGTTCGICTNIFSLGFPPKYIPSFQWMGQENTVAYEFDKAISAMRAMMTRRNIELSDDYLQMMKTISK 297
            W SK E E G QF GTI+ DHSKTAINT LN GT CG+  NIF  GFPPK IPSF W+G  +   Y F+KA+  M AMM RRN EL  DY  MM+ + K
Sbjct:  296 WDSKQEVESGQQFLGTIMADHSKTAINTKLNTGTMCGVSANIFMSGFPPKLIPSFSWVGSSDMQTYHFEKALETMAAMMVRRNKELDSDYQHMMRHLFK 394          
BLAST of mRNA_M-pyrifera_M_contig127041.5438.1 vs. uniprot
Match: UPI000CD8B68D (glucose-1-phosphate thymidylyltransferase n=1 Tax=Gracilimonas amylolytica TaxID=1749045 RepID=UPI000CD8B68D)

HSP 1 Score: 125 bits (314), Expect = 2.660e-32
Identity = 57/99 (57.58%), Postives = 71/99 (71.72%), Query Frame = 1
Query:    1 WSSKTEYEKGFQFFGTILGDHSKTAINTVLNAGTTCGICTNIFSLGFPPKYIPSFQWMGQENTVAYEFDKAISAMRAMMTRRNIELSDDYLQMMKTISK 297
            W  + E E   QF GT++GDHSKTAIN++LN GT CG+ +NIF  GFPPKYIPSF W+G      Y+FDKA+ AM+AMM RR++ LS DY +MM  I K
Sbjct:  303 WEKREEMETEQQFLGTVMGDHSKTAINSMLNTGTICGVSSNIFMGGFPPKYIPSFSWVGSAEFGEYQFDKAVDAMKAMMKRRDVALSPDYEKMMYRIFK 401          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig127041.5438.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3D2IKS3_9BACT7.920e-3857.73Uncharacterized protein n=1 Tax=Balneola sp. TaxID... [more]
A0A2D8CFX0_9BACT2.700e-3663.27Glucose-1-phosphate thymidylyltransferase n=1 Tax=... [more]
A0A2D9FQW7_9BACT4.170e-3564.89Glucose-1-phosphate thymidylyltransferase n=2 Tax=... [more]
A0A3F3HYW1_9BACT7.790e-3557.73Glucose-1-phosphate thymidylyltransferase n=3 Tax=... [more]
A0A521FAA5_9BACT1.310e-3358.59UDP-N-acetylglucosamine diphosphorylase/glucosamin... [more]
A0A3M8G2G5_9BACT3.390e-3359.57Glucose-1-phosphate thymidylyltransferase n=1 Tax=... [more]
A0A2A2GB90_9BACT6.740e-3360.82Glucose-1-phosphate thymidylyltransferase n=1 Tax=... [more]
UPI00083FC3F81.020e-3255.67hypothetical protein n=1 Tax=Rhodohalobacter halop... [more]
A0A6A8Q1N5_9BACT2.390e-3258.59Glucose-1-phosphate thymidylyltransferase n=1 Tax=... [more]
UPI000CD8B68D2.660e-3257.58glucose-1-phosphate thymidylyltransferase n=1 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig127041contigM-pyrifera_M_contig127041:201..506 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score116.7
Seed ortholog evalue6.4e-24
Seed eggNOG ortholog1121104.AQXH01000001_gene1854
Preferred nameglmU
KEGG rclassRC00002
KEGG koko:K00973
KEGG ReactionR02328
KEGG Pathwayko00521,ko00523,ko00525,ko01130,map00521,map00523,map00525,map01130
KEGG ModuleM00793
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Sugar nucleotidyl transferase
EggNOG OGs1IP3D@117747,4NDZP@976,COG1207@1,COG1207@2
EC2.7.7.24
COG Functional cat.M
Best tax levelSphingobacteriia
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons1
Model size306
Cds size306
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815783.931644-CDS-M-pyrifera_M_contig127041:200..5061622815783.931644-CDS-M-pyrifera_M_contig127041:200..506Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig127041 201..506 -
1692277567.68724-CDS-M-pyrifera_M_contig127041:200..5061692277567.68724-CDS-M-pyrifera_M_contig127041:200..506Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig127041 201..506 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig127041.5438.1prot_M-pyrifera_M_contig127041.5438.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig127041 201..506 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig127041.5438.1

>prot_M-pyrifera_M_contig127041.5438.1 ID=prot_M-pyrifera_M_contig127041.5438.1|Name=mRNA_M-pyrifera_M_contig127041.5438.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=102bp
WSSKTEYEKGFQFFGTILGDHSKTAINTVLNAGTTCGICTNIFSLGFPPK
YIPSFQWMGQENTVAYEFDKAISAMRAMMTRRNIELSDDYLQMMKTISKL
T*
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mRNA from alignment at M-pyrifera_M_contig127041:201..506-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig127041.5438.1 ID=mRNA_M-pyrifera_M_contig127041.5438.1|Name=mRNA_M-pyrifera_M_contig127041.5438.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=306bp|location=Sequence derived from alignment at M-pyrifera_M_contig127041:201..506- (Macrocystis pyrifera P11B4 male)
TGGTCTTCTAAAACTGAATATGAAAAAGGTTTTCAGTTTTTTGGTACAAT ACTTGGAGATCATTCTAAAACTGCAATTAATACAGTACTTAATGCGGGTA CTACTTGTGGAATTTGCACAAATATTTTCTCCTTGGGTTTTCCTCCAAAG TATATACCTTCATTTCAATGGATGGGACAGGAAAACACAGTTGCTTATGA ATTTGATAAAGCCATTTCTGCAATGCGAGCAATGATGACGCGAAGAAATA TTGAACTAAGCGATGATTATCTACAAATGATGAAGACGATTAGTAAACTC ACTTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig127041:201..506-

>mRNA_M-pyrifera_M_contig127041.5438.1 ID=mRNA_M-pyrifera_M_contig127041.5438.1|Name=mRNA_M-pyrifera_M_contig127041.5438.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=612bp|location=Sequence derived from alignment at M-pyrifera_M_contig127041:201..506- (Macrocystis pyrifera P11B4 male)
TGGTCTTCTAAAACTGAATATGAAAAAGGTTTTCAGTTTTTTGGTACAAT
ACTTGGAGATCATTCTAAAACTGCAATTAATACAGTACTTAATGCGGGTA
CTACTTGTGGAATTTGCACAAATATTTTCTCCTTGGGTTTTCCTCCAAAG
TATATACCTTCATTTCAATGGATGGGACAGGAAAACACAGTTGCTTATGA
ATTTGATAAAGCCATTTCTGCAATGCGAGCAATGATGACGCGAAGAAATA
TTGAACTAAGCGATGATTATCTACAAATGATGAAGACGATTAGTAAACTC
ACTTAATGGTCTTCTAAAACTGAATATGAAAAAGGTTTTCAGTTTTTTGG
TACAATACTTGGAGATCATTCTAAAACTGCAATTAATACAGTACTTAATG
CGGGTACTACTTGTGGAATTTGCACAAATATTTTCTCCTTGGGTTTTCCT
CCAAAGTATATACCTTCATTTCAATGGATGGGACAGGAAAACACAGTTGC
TTATGAATTTGATAAAGCCATTTCTGCAATGCGAGCAATGATGACGCGAA
GAAATATTGAACTAAGCGATGATTATCTACAAATGATGAAGACGATTAGT
AAACTCACTTAA
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