mRNA_M-pyrifera_M_contig126904.5418.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig126904.5418.1
Unique NamemRNA_M-pyrifera_M_contig126904.5418.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig126904.5418.1 vs. uniprot
Match: A0A7C8CM32_9DELT (SDR family oxidoreductase n=1 Tax=Myxococcales bacterium TaxID=2026763 RepID=A0A7C8CM32_9DELT)

HSP 1 Score: 186 bits (473), Expect = 8.340e-54
Identity = 102/155 (65.81%), Postives = 122/155 (78.71%), Query Frame = 1
Query:   28 AHVAWLEALAASPAALAQLDEELLVRLRQAAGKVALPDRLERRKHSRARRKKKRTETRVQDDAALEATSNRALKRALAFPKAPKALDVSAEHRALLERQAGERAKDARRRQLAEPRACYVCKTEYTELHHHYDSMCPECAALNWVKRHQTADLTG 492
            AH+AWLEA+AASP +L +LD E L+RLRQAAG+VALPDRL RRKH+ ARR ++R   R QDDAALEATS+R++KRAL+FP APK L +++E R LLE QA ER K  RR  L EP+ CYVCK  + ELHHHYDSMCP CA +NW+KR  TADL G
Sbjct:   20 AHLAWLEAMAASPESLVELDPESLLRLRQAAGRVALPDRLARRKHANARRGEQRRRIREQDDAALEATSHRSMKRALSFPIAPKELAITSEQRLLLEHQARERPKQDRR-MLNEPKGCYVCKEPFRELHHHYDSMCPACADMNWLKRTATADLKG 173          
BLAST of mRNA_M-pyrifera_M_contig126904.5418.1 vs. uniprot
Match: A0A2D7I4T6_9DELT (Oxidoreductase n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A2D7I4T6_9DELT)

HSP 1 Score: 177 bits (449), Expect = 2.830e-50
Identity = 95/154 (61.69%), Postives = 121/154 (78.57%), Query Frame = 1
Query:   31 HVAWLEALAASPAALAQLDEELLVRLRQAAGKVALPDRLERRKHSRARRKKKRTETRVQDDAALEATSNRALKRALAFPKAPKALDVSAEHRALLERQAGERAKDARRRQLAEPRACYVCKTEYTELHHHYDSMCPECAALNWVKRHQTADLTG 492
            H+ W+E++AASP +LA+LD + L+RLR+AAG+VALPDR+ RRKH+ AR+ ++R   R  DDAALEATSNRA+KRALAFP APK L ++ E R+LLE QA +R K  + R L E +ACYVCK ++ ELHHHYDSMCP CA LNW+KR  TA+L G
Sbjct:   21 HLRWIESMAASPESLAELDSQDLLRLRRAAGEVALPDRMARRKHANARKGQQRRRIRKDDDAALEATSNRAMKRALAFPTAPKELAITDEQRSLLEHQARQRPKQEQAR-LHESKACYVCKNQFRELHHHYDSMCPSCAELNWLKRTATANLQG 173          
BLAST of mRNA_M-pyrifera_M_contig126904.5418.1 vs. uniprot
Match: A0A2D5NCN4_9BACT (Oxidoreductase n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A2D5NCN4_9BACT)

HSP 1 Score: 176 bits (445), Expect = 9.810e-50
Identity = 98/166 (59.04%), Postives = 125/166 (75.30%), Query Frame = 1
Query:    1 LDVDDEAARA--HVAWLEALAASPAALAQLDEELLVRLRQAAGKVALPDRLERRKHSRARRKKKRTETRVQDDAALEATSNRALKRALAFPKAPKALDVSAEHRALLERQAGERAKDARRRQLAEPRACYVCKTEYTELHHHYDSMCPECAALNWVKRHQTADLTG 492
            +D+ D++A    H+ WLEALA+ P  L  LDE+LLVRLR AAGKVALPDR+ RRK +  RR + R   R QDD ALEATSNR +KRA++FP AP+ L+++A+ RA+LERQA  R ++ R R L + +ACYVCK +YTELH HYDSMCP+CA LNW+KR  +ADL G
Sbjct:    3 IDLPDDSAEVEQHLRWLEALASGPEKLLDLDEDLLVRLRAAAGKVALPDRMSRRKLAHERRSRLRQAVREQDDRALEATSNRQMKRAMSFPVAPRQLEITADQRAILERQARARPQEQRAR-LNKSQACYVCKQQYTELHFHYDSMCPKCADLNWLKRTASADLRG 167          
BLAST of mRNA_M-pyrifera_M_contig126904.5418.1 vs. uniprot
Match: A0A2E5YSV2_9DELT (Oxidoreductase n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A2E5YSV2_9DELT)

HSP 1 Score: 166 bits (420), Expect = 5.260e-46
Identity = 96/167 (57.49%), Postives = 116/167 (69.46%), Query Frame = 1
Query:    4 DVDDEAARA----HVAWLEALAASPAALAQLDEELLVRLRQAAGKVALPDRLERRKHSRARRKKKRTETRVQDDAALEATSNRALKRALAFPKAPKALDVSAEHRALLERQAGERAKDARRRQLAEPRACYVCKTEYTELHHHYDSMCPECAALNWVKRHQTADLTG 492
            D DDE   A    H+ WLE +A     L  L+  LL RLR AAG++ALPDRLERR+ ++ RR+    + R +D+AALEATSNRA KRALAFP AP  +++S  HR LLE Q+  R  DA   +L EPR CYVCKTE++ELHHHYDSMCP CA  NW KR QTADL+G
Sbjct:    4 DPDDEIESADFERHLGWLEEIADELGTLHDLEPALLTRLRIAAGRIALPDRLERRRFNQTRRRASTRKKRERDEAALEATSNRARKRALAFPVAPADVEMSDGHRRLLEYQSRRRRADASADRLLEPRTCYVCKTEFSELHHHYDSMCPTCAWFNWGKRTQTADLSG 170          
BLAST of mRNA_M-pyrifera_M_contig126904.5418.1 vs. uniprot
Match: A0A800G6C0_9BACT (SDR family oxidoreductase n=3 Tax=cellular organisms TaxID=131567 RepID=A0A800G6C0_9BACT)

HSP 1 Score: 164 bits (416), Expect = 3.310e-45
Identity = 94/156 (60.26%), Postives = 112/156 (71.79%), Query Frame = 1
Query:   40 WLEALAASPAALAQLDEELLVRLRQAAGKVALPDRLERRKHSRARRKKKRTETRVQDDAALEATSNRALKRALAFPKAPKALDVSAEHRALLERQA-----GERAKDARRRQLAEPRACYVCKTEYTELHHHYDSMCPECAALNWVKRHQTADLTG 492
            WLE+LA  P  LA LDEE+L RLR +AG +ALPDR  RR  S ARRK+ R + R  DDAAL ATSNRALKR+L +P AP +LD+S   R LLE+QA     GE+A     R+L EP  CY+CK +Y +LH HYD+MCPECA LNW KRHQTADL+G
Sbjct:   24 WLESLAQDPRQLAALDEEVLNRLRMSAGLIALPDRKARRVFSNARRKRAREQVRSVDDAALNATSNRALKRSLRYPVAPPSLDISERDRDLLEKQAWQPKEGEQAA----RRLEEPARCYICKEDYQDLHPHYDAMCPECAELNWAKRHQTADLSG 175          
BLAST of mRNA_M-pyrifera_M_contig126904.5418.1 vs. uniprot
Match: A0A2E3NM21_9DELT (Oxidoreductase n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A2E3NM21_9DELT)

HSP 1 Score: 157 bits (398), Expect = 7.310e-43
Identity = 91/153 (59.48%), Postives = 108/153 (70.59%), Query Frame = 1
Query:   34 VAWLEALAASPAALAQLDEELLVRLRQAAGKVALPDRLERRKHSRARRKKKRTETRVQDDAALEATSNRALKRALAFPKAPKALDVSAEHRALLERQAGERAKDARRRQLAEPRACYVCKTEYTELHHHYDSMCPECAALNWVKRHQTADLTG 492
            V  LE+L  +P AL  L  EL  RLR AAG++ALPDR ERR+ +RARR         +DD+ALEATSNRA KRALAFP  P+  ++ AE R LLE QA  RA+D  R +L  PR CYVCK  + E+HHHYDSMCP CA+LNWVKR QTADL+G
Sbjct:   15 VELLESLVDAPEALQALPPELHERLRIAAGRLALPDRTERRRFARARRGXXXXXXXERDDSALEATSNRARKRALAFPVPPRETEIDAEARRLLEHQARSRAQDPTRARLDAPRDCYVCKAPFVEVHHHYDSMCPACASLNWVKRSQTADLSG 167          
BLAST of mRNA_M-pyrifera_M_contig126904.5418.1 vs. uniprot
Match: A0A2D5XM83_9BACT (Oxidoreductase n=2 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A2D5XM83_9BACT)

HSP 1 Score: 153 bits (386), Expect = 6.350e-41
Identity = 89/150 (59.33%), Postives = 100/150 (66.67%), Query Frame = 1
Query:   43 LEALAASPAALAQLDEELLVRLRQAAGKVALPDRLERRKHSRARRKKKRTETRVQDDAALEATSNRALKRALAFPKAPKALDVSAEHRALLERQAGERAKDARRRQLAEPRACYVCKTEYTELHHHYDSMCPECAALNWVKRHQTADLTG 492
            LE L+  P  L   D  LL RLR AAG++ALPDRL RR   + RRK +R + RV+DD AL ATSNRALKRAL FP AP  L VS   R LLERQA     DA  R L EP  CY+CK  Y ELH HYD++CP CAA NW KR QTADL+G
Sbjct:   18 LEGLSQDPGQLQGADPALLKRLRAAAGRLALPDRLARRVFGKQRRKLEREQVRVKDDQALNATSNRALKRALRFPTAPPGLQVSEHDRELLERQAWTPGWDAAARVLEEPANCYICKQAYQELHQHYDALCPSCAAFNWEKRFQTADLSG 167          
BLAST of mRNA_M-pyrifera_M_contig126904.5418.1 vs. uniprot
Match: A0A2D5AU44_9BACT (Oxidoreductase n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A2D5AU44_9BACT)

HSP 1 Score: 148 bits (373), Expect = 3.790e-39
Identity = 89/158 (56.33%), Postives = 107/158 (67.72%), Query Frame = 1
Query:   40 WLEA---LAASPAALAQLDEELLVRLRQAAGKVALPDRLERRKHSRARRKKKRTETRVQDDAALEATSNRALKRALAFPKAPKALDVSAEHRALLERQAGERAKDARR----RQLAEPRACYVCKTEYTELHHHYDSMCPECAALNWVKRHQTADLTG 492
            WLE    LAA    LA LDE+ L RLR A G++A PDR +RR  +R RR   R ++R +DDAAL+ATSNRALKRAL F  AP  L +S+E+R LLERQA  R          R+L +PR CY+CK  + +LHHHYDS+CP CAALNW KR QTADL G
Sbjct:   25 WLEXXXXLAADHGRLAALDEDTLRRLRDAGGRIAFPDRTQRRTLARKRRGNIRRQSRKRDDAALDATSNRALKRALRFGVAPLQLAISSENRRLLERQAAPRPGPEETGTGGRRLEQPRDCYICKAPHRDLHHHYDSLCPPCAALNWEKRTQTADLAG 182          
BLAST of mRNA_M-pyrifera_M_contig126904.5418.1 vs. uniprot
Match: A0A432H6D2_9BACT (UDPG_MGDP_dh_C domain-containing protein (Fragment) n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A432H6D2_9BACT)

HSP 1 Score: 135 bits (340), Expect = 3.100e-36
Identity = 77/152 (50.66%), Postives = 100/152 (65.79%), Query Frame = 1
Query:   40 WLEALAASPAALAQLDEELLVRLRQAAGKVALPDRLERRKHSRARRKKKRTETRVQDDAALEATSNRALKRALAFPKAPKALDVSAEHRALLERQAGE-RAKDARRRQLAEPRACYVCKTEYTELHHHYDSMCPECAALNWVKRHQTADLTG 492
            WLE LA   + L++LDE  L RLR AAGK++ PDR  R+  +R RR  +R   R  DDA L ATSNR+LKR++ FP AP A+ ++ + R LL++QA            L EPR CY+CK++Y ++H HYDSMCP CA LNW KR Q+ADL G
Sbjct:   26 WLEHLADDHSRLSELDERTLNRLRAAAGKISFPDRTARKNLARQRRLARRRTARRADDATLNATSNRSLKRSMRFPVAPLAIPMANDSRELLQQQAAVVETPSGEGDHLLEPRNCYICKSDYRQVHQHYDSMCPTCAGLNWQKRLQSADLNG 177          
BLAST of mRNA_M-pyrifera_M_contig126904.5418.1 vs. uniprot
Match: A0A7C7XWM6_9DELT (SDR family oxidoreductase n=1 Tax=Myxococcales bacterium TaxID=2026763 RepID=A0A7C7XWM6_9DELT)

HSP 1 Score: 110 bits (274), Expect = 4.450e-25
Identity = 70/160 (43.75%), Postives = 92/160 (57.50%), Query Frame = 1
Query:   34 VAWLEALAASPAALAQLDEELLVRLRQAAGKVALPDRLERRKHSRARRKKKRTETRVQDDAALEATSNRALKRALAFPKAPKALDVSAEHRALLERQA-------GERAKDARRRQLAEPRACYVCKTEYTELHHHYDSMCPECAALNWVKRHQTADLTG 492
            +AWLE+ +   A L++LD   L RLR+AAG++A P+R ERR                   AAL ATSNR +KRAL F   P    +S++ R LLE QA       G    +A    L   + CY+CK +Y ELHHHYD++CP+CA  NW KR QT+DL+G
Sbjct:   23 LAWLESFSMDLARLSELDAASLRRLREAAGRIAFPERSERRALIARXXXXXXXXXXXXXXAALNATSNRRMKRALRFSVPPAHAMISSDDRELLEMQATAPMLEAGRDTGEASIASLQGAQNCYICKADYHELHHHYDTLCPKCATFNWGKRIQTSDLSG 182          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig126904.5418.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7C8CM32_9DELT8.340e-5465.81SDR family oxidoreductase n=1 Tax=Myxococcales bac... [more]
A0A2D7I4T6_9DELT2.830e-5061.69Oxidoreductase n=1 Tax=Deltaproteobacteria bacteri... [more]
A0A2D5NCN4_9BACT9.810e-5059.04Oxidoreductase n=1 Tax=Planctomycetes bacterium Ta... [more]
A0A2E5YSV2_9DELT5.260e-4657.49Oxidoreductase n=1 Tax=Deltaproteobacteria bacteri... [more]
A0A800G6C0_9BACT3.310e-4560.26SDR family oxidoreductase n=3 Tax=cellular organis... [more]
A0A2E3NM21_9DELT7.310e-4359.48Oxidoreductase n=1 Tax=Deltaproteobacteria bacteri... [more]
A0A2D5XM83_9BACT6.350e-4159.33Oxidoreductase n=2 Tax=Planctomycetes bacterium Ta... [more]
A0A2D5AU44_9BACT3.790e-3956.33Oxidoreductase n=1 Tax=Planctomycetes bacterium Ta... [more]
A0A432H6D2_9BACT3.100e-3650.66UDPG_MGDP_dh_C domain-containing protein (Fragment... [more]
A0A7C7XWM6_9DELT4.450e-2543.75SDR family oxidoreductase n=1 Tax=Myxococcales bac... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig126904contigM-pyrifera_M_contig126904:3..494 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score87.4
Seed ortholog evalue6.6e-15
Seed eggNOG ortholog879212.DespoDRAFT_03415
Hectar predicted targeting categoryother localisation
EggNOG free text desc.short chain dehydrogenase
EggNOG OGs1R4BM@1224,2MJ0I@213118,2WJJK@28221,42PS2@68525,COG1028@1,COG1028@2
COG Functional cat.IQ
Best tax levelDesulfobacterales
Best eggNOG OGNA|NA|NA
Exons1
Model size492
Cds size492
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815782.9462416-CDS-M-pyrifera_M_contig126904:2..4941622815782.9462416-CDS-M-pyrifera_M_contig126904:2..494Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig126904 3..494 -
1692277567.2363904-CDS-M-pyrifera_M_contig126904:2..4941692277567.2363904-CDS-M-pyrifera_M_contig126904:2..494Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig126904 3..494 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig126904.5418.1prot_M-pyrifera_M_contig126904.5418.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig126904 3..494 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig126904.5418.1

>prot_M-pyrifera_M_contig126904.5418.1 ID=prot_M-pyrifera_M_contig126904.5418.1|Name=mRNA_M-pyrifera_M_contig126904.5418.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=164bp
LDVDDEAARAHVAWLEALAASPAALAQLDEELLVRLRQAAGKVALPDRLE
RRKHSRARRKKKRTETRVQDDAALEATSNRALKRALAFPKAPKALDVSAE
HRALLERQAGERAKDARRRQLAEPRACYVCKTEYTELHHHYDSMCPECAA
LNWVKRHQTADLTG
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mRNA from alignment at M-pyrifera_M_contig126904:3..494-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig126904.5418.1 ID=mRNA_M-pyrifera_M_contig126904.5418.1|Name=mRNA_M-pyrifera_M_contig126904.5418.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=492bp|location=Sequence derived from alignment at M-pyrifera_M_contig126904:3..494- (Macrocystis pyrifera P11B4 male)
CTCGACGTGGACGACGAAGCCGCCCGCGCGCACGTCGCGTGGCTCGAGGC CCTGGCCGCGTCGCCCGCCGCGCTCGCCCAGTTGGACGAGGAACTCTTGG TGCGCCTGCGCCAGGCGGCCGGCAAGGTCGCGCTGCCCGACCGGCTCGAG CGCCGCAAGCACAGCCGCGCGCGGCGCAAGAAGAAGCGCACCGAGACCCG CGTCCAGGACGACGCCGCGCTCGAGGCGACCAGCAACCGCGCGCTCAAGC GTGCGCTCGCCTTTCCCAAGGCGCCCAAGGCGCTGGACGTCTCCGCCGAG CATCGCGCGCTGCTCGAGCGCCAGGCCGGCGAGCGCGCCAAGGACGCGCG CCGGCGCCAGCTCGCCGAGCCGCGCGCCTGCTACGTCTGCAAGACCGAGT ACACCGAGCTGCACCACCACTACGACTCGATGTGCCCCGAGTGCGCCGCG CTGAATTGGGTCAAGCGCCACCAGACCGCGGACCTCACCGGG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig126904:3..494-

>mRNA_M-pyrifera_M_contig126904.5418.1 ID=mRNA_M-pyrifera_M_contig126904.5418.1|Name=mRNA_M-pyrifera_M_contig126904.5418.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=984bp|location=Sequence derived from alignment at M-pyrifera_M_contig126904:3..494- (Macrocystis pyrifera P11B4 male)
CTCGACGTGGACGACGAAGCCGCCCGCGCGCACGTCGCGTGGCTCGAGGC
CCTGGCCGCGTCGCCCGCCGCGCTCGCCCAGTTGGACGAGGAACTCTTGG
TGCGCCTGCGCCAGGCGGCCGGCAAGGTCGCGCTGCCCGACCGGCTCGAG
CGCCGCAAGCACAGCCGCGCGCGGCGCAAGAAGAAGCGCACCGAGACCCG
CGTCCAGGACGACGCCGCGCTCGAGGCGACCAGCAACCGCGCGCTCAAGC
GTGCGCTCGCCTTTCCCAAGGCGCCCAAGGCGCTGGACGTCTCCGCCGAG
CATCGCGCGCTGCTCGAGCGCCAGGCCGGCGAGCGCGCCAAGGACGCGCG
CCGGCGCCAGCTCGCCGAGCCGCGCGCCTGCTACGTCTGCAAGACCGAGT
ACACCGAGCTGCACCACCACTACGACTCGATGTGCCCCGAGTGCGCCGCG
CTGAATTGGGTCAAGCGCCACCAGACCGCGGACCTCACCGGGCTCGACGT
GGACGACGAAGCCGCCCGCGCGCACGTCGCGTGGCTCGAGGCCCTGGCCG
CGTCGCCCGCCGCGCTCGCCCAGTTGGACGAGGAACTCTTGGTGCGCCTG
CGCCAGGCGGCCGGCAAGGTCGCGCTGCCCGACCGGCTCGAGCGCCGCAA
GCACAGCCGCGCGCGGCGCAAGAAGAAGCGCACCGAGACCCGCGTCCAGG
ACGACGCCGCGCTCGAGGCGACCAGCAACCGCGCGCTCAAGCGTGCGCTC
GCCTTTCCCAAGGCGCCCAAGGCGCTGGACGTCTCCGCCGAGCATCGCGC
GCTGCTCGAGCGCCAGGCCGGCGAGCGCGCCAAGGACGCGCGCCGGCGCC
AGCTCGCCGAGCCGCGCGCCTGCTACGTCTGCAAGACCGAGTACACCGAG
CTGCACCACCACTACGACTCGATGTGCCCCGAGTGCGCCGCGCTGAATTG
GGTCAAGCGCCACCAGACCGCGGACCTCACCGGG
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