mRNA_M-pyrifera_M_contig126662.5368.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig126662.5368.1
Unique NamemRNA_M-pyrifera_M_contig126662.5368.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig126662.5368.1 vs. uniprot
Match: A0A455V1S8_9GAMM (Uncharacterized protein n=1 Tax=Halomonas axialensis TaxID=115555 RepID=A0A455V1S8_9GAMM)

HSP 1 Score: 73.6 bits (179), Expect = 4.150e-16
Identity = 34/40 (85.00%), Postives = 37/40 (92.50%), Query Frame = 1 
Query:    1 MATIKRTPSNTWKAMIRKSGWPTTIKTFRTKRDAEDWARR 120
            MATI +TPS TWKA+IRKSGWPTT KTFRTKRDA+DWARR
Sbjct:    1 MATIVKTPSATWKAVIRKSGWPTTAKTFRTKRDAQDWARR 40
[Close]
BLAST of mRNA_M-pyrifera_M_contig126662.5368.1 vs. uniprot
Match: A0A1R4HNA3_9GAMM (Shufflon-specific DNA recombinase n=2 Tax=Halomonas TaxID=2745 RepID=A0A1R4HNA3_9GAMM)

HSP 1 Score: 73.6 bits (179), Expect = 4.720e-16
Identity = 34/40 (85.00%), Postives = 37/40 (92.50%), Query Frame = 1 
Query:    1 MATIKRTPSNTWKAMIRKSGWPTTIKTFRTKRDAEDWARR 120
            MATI +TPS TWKA+IRKSGWPTT KTFRTKRDA+DWARR
Sbjct:    1 MATIVKTPSATWKAVIRKSGWPTTAKTFRTKRDAQDWARR 40
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BLAST of mRNA_M-pyrifera_M_contig126662.5368.1 vs. uniprot
Match: A0A7X6W5T1_9GAMM (Site-specific integrase (Fragment) n=1 Tax=Halopseudomonas formosensis TaxID=1002526 RepID=A0A7X6W5T1_9GAMM)

HSP 1 Score: 73.6 bits (179), Expect = 6.110e-16
Identity = 33/40 (82.50%), Postives = 37/40 (92.50%), Query Frame = 1 
Query:    1 MATIKRTPSNTWKAMIRKSGWPTTIKTFRTKRDAEDWARR 120
            MAT+ +TPS TWKA+IRK+GWPTT KTFRTKRDAEDWARR
Sbjct:    1 MATLVKTPSGTWKAVIRKTGWPTTAKTFRTKRDAEDWARR 40
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BLAST of mRNA_M-pyrifera_M_contig126662.5368.1 vs. uniprot
Match: UPI00200C5B8F (hypothetical protein n=1 Tax=Acidithiobacillus sp. S30A2 TaxID=2937799 RepID=UPI00200C5B8F)

HSP 1 Score: 73.6 bits (179), Expect = 6.110e-16
Identity = 33/39 (84.62%), Postives = 35/39 (89.74%), Query Frame = 1 
Query:    1 MATIKRTPSNTWKAMIRKSGWPTTIKTFRTKRDAEDWAR 117
            M TI +TPS TWKAM+RK GWPTTIKTFRTKRDAEDWAR
Sbjct:    1 MPTIVKTPSGTWKAMVRKQGWPTTIKTFRTKRDAEDWAR 39
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BLAST of mRNA_M-pyrifera_M_contig126662.5368.1 vs. uniprot
Match: A0A095VNH3_9GAMM (Shufflon-specific DNA recombinase n=1 Tax=Pseudohaliea rubra DSM 19751 TaxID=1265313 RepID=A0A095VNH3_9GAMM)

HSP 1 Score: 72.0 bits (175), Expect = 7.100e-16
Identity = 32/40 (80.00%), Postives = 36/40 (90.00%), Query Frame = 1 
Query:    1 MATIKRTPSNTWKAMIRKSGWPTTIKTFRTKRDAEDWARR 120
            MATI RTPS TWKA++RK GWPTTIKTFRT+RDA DW+RR
Sbjct:    1 MATITRTPSKTWKAVVRKHGWPTTIKTFRTRRDAADWSRR 40
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BLAST of mRNA_M-pyrifera_M_contig126662.5368.1 vs. uniprot
Match: UPI000AC8F303 (hypothetical protein n=1 Tax=Edaphobacter aggregans TaxID=570835 RepID=UPI000AC8F303)

HSP 1 Score: 72.8 bits (177), Expect = 8.580e-16
Identity = 32/40 (80.00%), Postives = 37/40 (92.50%), Query Frame = 1 
Query:    1 MATIKRTPSNTWKAMIRKSGWPTTIKTFRTKRDAEDWARR 120
            MATI +TPS TWKA++RK+GWPTT KTFRTKRDAEDW+RR
Sbjct:    1 MATIVKTPSGTWKAVVRKTGWPTTAKTFRTKRDAEDWSRR 40
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BLAST of mRNA_M-pyrifera_M_contig126662.5368.1 vs. uniprot
Match: UPI001E635908 (hypothetical protein n=1 Tax=Halomonas sp. A40-4 TaxID=2785909 RepID=UPI001E635908)

HSP 1 Score: 73.6 bits (179), Expect = 1.060e-15
Identity = 34/40 (85.00%), Postives = 37/40 (92.50%), Query Frame = 1 
Query:    1 MATIKRTPSNTWKAMIRKSGWPTTIKTFRTKRDAEDWARR 120
            MATI +TPS TWKA+IRKSGWPTT KTFRTKRDA+DWARR
Sbjct:    1 MATIVKTPSATWKAVIRKSGWPTTAKTFRTKRDAQDWARR 40
[Close]
BLAST of mRNA_M-pyrifera_M_contig126662.5368.1 vs. uniprot
Match: UPI001B7CF049 (hypothetical protein n=1 Tax=Azoarcus taiwanensis TaxID=666964 RepID=UPI001B7CF049)

HSP 1 Score: 74.3 bits (181), Expect = 1.910e-15
Identity = 34/40 (85.00%), Postives = 37/40 (92.50%), Query Frame = 1 
Query:    1 MATIKRTPSNTWKAMIRKSGWPTTIKTFRTKRDAEDWARR 120
            MATI +TPS TWKA+IRK+GWPTT KTFRTKRDAEDWARR
Sbjct:    1 MATIVKTPSGTWKAVIRKTGWPTTAKTFRTKRDAEDWARR 40
[Close]
BLAST of mRNA_M-pyrifera_M_contig126662.5368.1 vs. uniprot
Match: A0A7C5Q7U0_9GAMM (Site-specific integrase n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A7C5Q7U0_9GAMM)

HSP 1 Score: 76.6 bits (187), Expect = 1.910e-15
Identity = 34/40 (85.00%), Postives = 38/40 (95.00%), Query Frame = 1 
Query:    1 MATIKRTPSNTWKAMIRKSGWPTTIKTFRTKRDAEDWARR 120
            MATI +TPSNTWKA++RK GWPTTIKTFRTKRDA+DWARR
Sbjct:    1 MATITKTPSNTWKAIVRKRGWPTTIKTFRTKRDAQDWARR 40
[Close]
BLAST of mRNA_M-pyrifera_M_contig126662.5368.1 vs. uniprot
Match: UPI000ADD9252 (hypothetical protein n=1 Tax=Pseudomonas viridiflava TaxID=33069 RepID=UPI000ADD9252)

HSP 1 Score: 70.9 bits (172), Expect = 3.360e-15
Identity = 31/40 (77.50%), Postives = 36/40 (90.00%), Query Frame = 1 
Query:    1 MATIKRTPSNTWKAMIRKSGWPTTIKTFRTKRDAEDWARR 120
            MAT+ +TPS TWKA+IRK+GWPT  KTFRTKRDAEDW+RR
Sbjct:    1 MATLVKTPSGTWKALIRKTGWPTVAKTFRTKRDAEDWSRR 40
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig126662.5368.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A455V1S8_9GAMM4.150e-1685.00Uncharacterized protein n=1 Tax=Halomonas axialens... [more]
A0A1R4HNA3_9GAMM4.720e-1685.00Shufflon-specific DNA recombinase n=2 Tax=Halomona... [more]
A0A7X6W5T1_9GAMM6.110e-1682.50Site-specific integrase (Fragment) n=1 Tax=Halopse... [more]
UPI00200C5B8F6.110e-1684.62hypothetical protein n=1 Tax=Acidithiobacillus sp.... [more]
A0A095VNH3_9GAMM7.100e-1680.00Shufflon-specific DNA recombinase n=1 Tax=Pseudoha... [more]
UPI000AC8F3038.580e-1680.00hypothetical protein n=1 Tax=Edaphobacter aggregan... [more]
UPI001E6359081.060e-1585.00hypothetical protein n=1 Tax=Halomonas sp. A40-4 T... [more]
UPI001B7CF0491.910e-1585.00hypothetical protein n=1 Tax=Azoarcus taiwanensis ... [more]
A0A7C5Q7U0_9GAMM1.910e-1585.00Site-specific integrase n=1 Tax=Gammaproteobacteri... [more]
UPI000ADD92523.360e-1577.50hypothetical protein n=1 Tax=Pseudomonas viridifla... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig126662contigM-pyrifera_M_contig126662:3..122 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score75.1
Seed ortholog evalue8.3e-12
Seed eggNOG ortholog1235457.C404_26875
Preferred namerci
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.Belongs to the 'phage' integrase family
EggNOG OGs1K4RQ@119060,1NWGS@1224,2VKWM@28216,COG0582@1,COG0582@2
COG Functional cat.L
Best tax levelBurkholderiaceae
Best eggNOG OGNA|NA|NA
Exons1
Model size120
Cds size120
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815780.873604-CDS-M-pyrifera_M_contig126662:2..1221622815780.873604-CDS-M-pyrifera_M_contig126662:2..122Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig126662 3..122 -
1692277566.2785661-CDS-M-pyrifera_M_contig126662:2..1221692277566.2785661-CDS-M-pyrifera_M_contig126662:2..122Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig126662 3..122 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig126662.5368.1prot_M-pyrifera_M_contig126662.5368.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig126662 3..122 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig126662.5368.1

>prot_M-pyrifera_M_contig126662.5368.1 ID=prot_M-pyrifera_M_contig126662.5368.1|Name=mRNA_M-pyrifera_M_contig126662.5368.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=40bp
MATIKRTPSNTWKAMIRKSGWPTTIKTFRTKRDAEDWARR
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mRNA from alignment at M-pyrifera_M_contig126662:3..122-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig126662.5368.1 ID=mRNA_M-pyrifera_M_contig126662.5368.1|Name=mRNA_M-pyrifera_M_contig126662.5368.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=120bp|location=Sequence derived from alignment at M-pyrifera_M_contig126662:3..122- (Macrocystis pyrifera P11B4 male)
ATGGCGACGATAAAAAGGACCCCATCGAATACCTGGAAAGCCATGATCCG
CAAAAGCGGCTGGCCGACCACAATCAAAACATTCCGCACGAAACGCGACG
CCGAAGATTGGGCGCGACGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig126662:3..122-

>mRNA_M-pyrifera_M_contig126662.5368.1 ID=mRNA_M-pyrifera_M_contig126662.5368.1|Name=mRNA_M-pyrifera_M_contig126662.5368.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=240bp|location=Sequence derived from alignment at M-pyrifera_M_contig126662:3..122- (Macrocystis pyrifera P11B4 male)
ATGGCGACGATAAAAAGGACCCCATCGAATACCTGGAAAGCCATGATCCG
CAAAAGCGGCTGGCCGACCACAATCAAAACATTCCGCACGAAACGCGACG
CCGAAGATTGGGCGCGACGCATGGCGACGATAAAAAGGACCCCATCGAAT
ACCTGGAAAGCCATGATCCGCAAAAGCGGCTGGCCGACCACAATCAAAAC
ATTCCGCACGAAACGCGACGCCGAAGATTGGGCGCGACGC
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