mRNA_M-pyrifera_M_contig126572.5350.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig126572.5350.1
Unique NamemRNA_M-pyrifera_M_contig126572.5350.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig126572.5350.1 vs. uniprot
Match: D8LBV9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBV9_ECTSI)

HSP 1 Score: 90.5 bits (223), Expect = 5.850e-20
Identity = 42/49 (85.71%), Postives = 45/49 (91.84%), Query Frame = 1 
Query:    1 GPVTYCVLLKGYGRQRRLSGVEGVMRDMRTRGVVPDVVALNAAVDAFVR 147
            GPVTYCVLLKGYGRQRRL GVE  MR+M+ RG+VPDVVALNAAVDAFVR
Sbjct:  119 GPVTYCVLLKGYGRQRRLGGVESTMREMKERGIVPDVVALNAAVDAFVR 167
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BLAST of mRNA_M-pyrifera_M_contig126572.5350.1 vs. uniprot
Match: A0A6H5L7F1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7F1_9PHAE)

HSP 1 Score: 87.8 bits (216), Expect = 5.180e-19
Identity = 41/49 (83.67%), Postives = 44/49 (89.80%), Query Frame = 1 
Query:    1 GPVTYCVLLKGYGRQRRLSGVEGVMRDMRTRGVVPDVVALNAAVDAFVR 147
            GPVTYCVLLKGYGRQRRL GVE  MR+M+ RG+VPDVVALNAAVDA VR
Sbjct:  582 GPVTYCVLLKGYGRQRRLRGVESTMREMKERGIVPDVVALNAAVDALVR 630
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BLAST of mRNA_M-pyrifera_M_contig126572.5350.1 vs. uniprot
Match: A0A835YV31_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YV31_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 1.470e-11
Identity = 31/49 (63.27%), Postives = 37/49 (75.51%), Query Frame = 1 
Query:    1 GPVTYCVLLKGYGRQRRLSGVEGVMRDMRTRGVVPDVVALNAAVDAFVR 147
            G VT+C+L+KGYGRQRR   V+  +R MR   V PDVV LNAAVDA+VR
Sbjct:  131 GNVTHCILVKGYGRQRRAHRVDAALRGMRRARVAPDVVTLNAAVDAYVR 179
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BLAST of mRNA_M-pyrifera_M_contig126572.5350.1 vs. uniprot
Match: A0A7S2SBE2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SBE2_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 3.460e-8
Identity = 26/47 (55.32%), Postives = 34/47 (72.34%), Query Frame = 1 
Query:    7 VTYCVLLKGYGRQRRLSGVEGVMRDMRTRGVVPDVVALNAAVDAFVR 147
            VTYC+L+KGYGR      V+ ++ DMR  GV  DV+ LNAA+DA+VR
Sbjct:   76 VTYCILIKGYGRLGSDQAVDHLLADMRKHGVKLDVITLNAAMDAYVR 122
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BLAST of mRNA_M-pyrifera_M_contig126572.5350.1 vs. uniprot
Match: A0A7S0LHA5_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LHA5_9EUKA)

HSP 1 Score: 48.9 bits (115), Expect = 2.630e-5
Identity = 21/47 (44.68%), Postives = 29/47 (61.70%), Query Frame = 1 
Query:    7 VTYCVLLKGYGRQRRLSGVEGVMRDMRTRGVVPDVVALNAAVDAFVR 147
            +T+C+L+KGYGR   +  V  +   MR R V PD+   NA +DA VR
Sbjct:  177 LTFCILIKGYGRVADIPRVRRIYSTMRRRSVAPDLATFNALLDAIVR 223
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BLAST of mRNA_M-pyrifera_M_contig126572.5350.1 vs. uniprot
Match: A0A836CQL2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CQL2_9STRA)

HSP 1 Score: 47.4 bits (111), Expect = 9.220e-5
Identity = 23/47 (48.94%), Postives = 26/47 (55.32%), Query Frame = 1 
Query:    7 VTYCVLLKGYGRQRRLSGVEGVMRDMRTRGVVPDVVALNAAVDAFVR 147
            V YC+L+KGYGRQ                   PDVV LNAAVDA+VR
Sbjct:  255 VAYCILIKGYGRQXXXXXXXXXXXXXXXXXXXPDVVTLNAAVDAYVR 301
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig126572.5350.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D8LBV9_ECTSI5.850e-2085.71Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L7F1_9PHAE5.180e-1983.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YV31_9STRA1.470e-1163.27Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2SBE2_9STRA3.460e-855.32Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A7S0LHA5_9EUKA2.630e-544.68Hypothetical protein (Fragment) n=1 Tax=Coccolithu... [more]
A0A836CQL2_9STRA9.220e-548.94Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig126572contigM-pyrifera_M_contig126572:145..294 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score90.9
Seed ortholog evalue1.8e-16
Seed eggNOG ortholog2880.D8LBV9
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.endonuclease activity
EggNOG OGsKOG4197@1,KOG4197@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size150
Cds size150
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815779.8883657-CDS-M-pyrifera_M_contig126572:144..2941622815779.8883657-CDS-M-pyrifera_M_contig126572:144..294Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig126572 145..294 +
1692277565.7840471-CDS-M-pyrifera_M_contig126572:144..2941692277565.7840471-CDS-M-pyrifera_M_contig126572:144..294Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig126572 145..294 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig126572.5350.1prot_M-pyrifera_M_contig126572.5350.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig126572 145..294 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig126572.5350.1

>prot_M-pyrifera_M_contig126572.5350.1 ID=prot_M-pyrifera_M_contig126572.5350.1|Name=mRNA_M-pyrifera_M_contig126572.5350.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=50bp
GPVTYCVLLKGYGRQRRLSGVEGVMRDMRTRGVVPDVVALNAAVDAFVR*
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mRNA from alignment at M-pyrifera_M_contig126572:145..294+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig126572.5350.1 ID=mRNA_M-pyrifera_M_contig126572.5350.1|Name=mRNA_M-pyrifera_M_contig126572.5350.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=150bp|location=Sequence derived from alignment at M-pyrifera_M_contig126572:145..294+ (Macrocystis pyrifera P11B4 male)
GGTCCCGTGACCTACTGCGTGCTGCTCAAGGGCTACGGTCGACAGCGGCG
CCTCTCCGGAGTGGAGGGAGTGATGCGGGACATGAGGACTCGCGGGGTCG
TTCCTGATGTCGTGGCGCTCAACGCGGCTGTGGACGCCTTTGTCAGGTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig126572:145..294+

>mRNA_M-pyrifera_M_contig126572.5350.1 ID=mRNA_M-pyrifera_M_contig126572.5350.1|Name=mRNA_M-pyrifera_M_contig126572.5350.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=300bp|location=Sequence derived from alignment at M-pyrifera_M_contig126572:145..294+ (Macrocystis pyrifera P11B4 male)
GGTCCCGTGACCTACTGCGTGCTGCTCAAGGGCTACGGTCGACAGCGGCG
CCTCTCCGGAGTGGAGGGAGTGATGCGGGACATGAGGACTCGCGGGGTCG
TTCCTGATGTCGTGGCGCTCAACGCGGCTGTGGACGCCTTTGTCAGGTAA
GGTCCCGTGACCTACTGCGTGCTGCTCAAGGGCTACGGTCGACAGCGGCG
CCTCTCCGGAGTGGAGGGAGTGATGCGGGACATGAGGACTCGCGGGGTCG
TTCCTGATGTCGTGGCGCTCAACGCGGCTGTGGACGCCTTTGTCAGGTAA
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