mRNA_M-pyrifera_M_contig12649.5344.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig12649.5344.1
Unique NamemRNA_M-pyrifera_M_contig12649.5344.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig12649.5344.1 vs. uniprot
Match: D7FXB3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXB3_ECTSI)

HSP 1 Score: 87.8 bits (216), Expect = 5.720e-19
Identity = 41/64 (64.06%), Postives = 52/64 (81.25%), Query Frame = 1 
Query:    1 IALAEARRKMLDPPHVDVAAISAVQAAFARGFPFQKHGRKFEETSVRSSLKDLMVSDGPARLIG 192
            +  A+ RRKMLDPP VD++AI+ VQAAFAR F F KHG KF + SVRSSLK++++S+GP RLIG
Sbjct:  257 VEFAQERRKMLDPPKVDMSAIATVQAAFARNFSFHKHGEKFTDISVRSSLKNIIMSEGPGRLIG 320
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BLAST of mRNA_M-pyrifera_M_contig12649.5344.1 vs. uniprot
Match: A0A6H5K524_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K524_9PHAE)

HSP 1 Score: 85.5 bits (210), Expect = 6.470e-18
Identity = 40/64 (62.50%), Postives = 51/64 (79.69%), Query Frame = 1 
Query:    1 IALAEARRKMLDPPHVDVAAISAVQAAFARGFPFQKHGRKFEETSVRSSLKDLMVSDGPARLIG 192
            +  A+ RRKMLDPP V ++AI+ VQAAFAR F F KHG KF++ SVRSSLK+++ S+GP RLIG
Sbjct:  341 VEFAQERRKMLDPPKVGMSAIATVQAAFARNFAFHKHGEKFKDISVRSSLKNIITSEGPGRLIG 404
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig12649.5344.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FXB3_ECTSI5.720e-1964.06Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K524_9PHAE6.470e-1862.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig12649contigM-pyrifera_M_contig12649:229..3461 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size195
Cds size168
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig12649.5344.1prot_M-pyrifera_M_contig12649.5344.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig12649 229..3434 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815779.4582043-CDS-M-pyrifera_M_contig12649:228..3781622815779.4582043-CDS-M-pyrifera_M_contig12649:228..378Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12649 229..378 -
1692277565.5288963-CDS-M-pyrifera_M_contig12649:228..3781692277565.5288963-CDS-M-pyrifera_M_contig12649:228..378Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12649 229..378 -
1622815779.4685977-CDS-M-pyrifera_M_contig12649:3416..34341622815779.4685977-CDS-M-pyrifera_M_contig12649:3416..3434Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12649 3417..3434 -
1692277565.5384693-CDS-M-pyrifera_M_contig12649:3416..34341692277565.5384693-CDS-M-pyrifera_M_contig12649:3416..3434Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12649 3417..3434 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815779.4799764-UTR-M-pyrifera_M_contig12649:3434..34611622815779.4799764-UTR-M-pyrifera_M_contig12649:3434..3461Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig12649 3435..3461 -
1692277565.5473611-UTR-M-pyrifera_M_contig12649:3434..34611692277565.5473611-UTR-M-pyrifera_M_contig12649:3434..3461Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig12649 3435..3461 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig12649.5344.1

>prot_M-pyrifera_M_contig12649.5344.1 ID=prot_M-pyrifera_M_contig12649.5344.1|Name=mRNA_M-pyrifera_M_contig12649.5344.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=56bp
MLDPPHVDVAAISAVQAAFARGFPFQKHGRKFEETSVRSSLKDLMVSDGP
ARLIG*
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mRNA from alignment at M-pyrifera_M_contig12649:229..3461-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig12649.5344.1 ID=mRNA_M-pyrifera_M_contig12649.5344.1|Name=mRNA_M-pyrifera_M_contig12649.5344.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=3233bp|location=Sequence derived from alignment at M-pyrifera_M_contig12649:229..3461- (Macrocystis pyrifera P11B4 male)
ATTGCGCTGGCAGAGGCCAGGAGAAAAATGCTCGACCCCCCACATGTGCG
TTGTCATGTCCACTGCCTGTGAGGTGGAACTTCACTATTAATACTAGTAC
TGCTGCACGAGTACTTCGCACGTCTTATCTTTACTGTTTCCTGCTTGCTC
CTTCCTACAGTACTCTATATTCGCAAGCACTCACAAGCACTCAAAAACAC
TCGGCGAAGTATGCAACCAGCCTGCCGGCTGTGTTCGCAAGCAATGGGAA
TCGGTCCGACCCGCTGCACCAAGGATAGGCCCAACCCCCGGCGCCGTGGT
CTCCGCCTCGAGTAGGAGGGGCTGTGGCGTAGCTGAAGTACAGTAGACAT
CAACGGCCGTACAGTTAGTAGGCGACCCCCTTTCATGTGGAAGACCTTCC
TCTCGGCCTTGGTCCAATTCGCGTGCCATGTCAGCGCTACCATTGATGCG
GTCGACTCTTTGAGCACGCCGTTTCATTCCAATCGATGCGGCTGTAGCAG
TAGAATTCTCACAGGCAGCCACCAAAATCGAGATCAAATAAAAAAATAAA
ACAGTCCGCGCCACAACTATGAAAGGTCCCGGCGACCACGTTTTTCAAGG
GGGCTCCGAGTAGTAGTTGTAAAAGTGGTCGCCGAGTCTGGGAGCGTCGG
AGCTCTTATTTTCAGCGGAGGACAAAACAAGACATGTATCAAGTCGCTTT
CCTGCGGCAGGGCTGATGTTGTTTTTTGTTCTTGCCGCCAGGCCGTGACC
CCGCCATTTGCGGTGCGGCGTTAGTTTATACGAGGAGGGGGGGGTACGAT
TTAAGAGGGTTTGGTTCTAGCGAAACACCGAGTTAAGAGATGTCTAGTGA
TGGCTTTGGCACGGGCGTATTAAAGCTACCAGGTATACAACAATTAGACG
CGAGACGACGAGGGGAGAAATGGTTGAAGTATTTAAGCGATGCACCGAAA
TGGAGAGAAAGGAAGGGGGGAGGAGAGCCCGCTATGTGACCCCGGATCTG
AGTTACCACCAGGAGGGAGAGAGAAACAAAGGGCGAAGATAATAAAACGG
CAAGACAAAAAATACGAAAGCATTCTGGTTTAAGAGGAATACTACCGGTT
TAACCGAGGTTTACTGGGTATGATACTCTTAAATTTCACCCCCGCTCCCC
CACCCCCTCCTGCGCCGCGTACTGTTCCATCGCCCCCCCCCCCCCCCCCC
CTCCGGCCCGCCCCTCTGTNNNNNNNNNNAAAACAGAAGGAAAAAAAAGA
AGAAAGGATTCTGGTGTTAAAGGACAACGACCTCTTTATCCGGGGTTTTT
GTGTTGTGATAACTTTACACCCCCCCCCCCCCCCCCCCCCTGTATGGTGT
CTGGTACAAGCTTACTTCCGCCTGTCCTTGTGCCAAAGCGACTGCTGTTT
GCCGTTCAGGCCACGTCGACGGCTCATGGACCCGCTCTTTACGGTAGCGG
CGCACGTAAGATTTATGAGGCTCATACTCGATTGAGGAACTCCATACATG
CGTCAATCGAACGCAGCCTTTTAGATAAAAAAAATTGTTTTTTCGTTTCC
TTTGGCCTTTTTCGCGACCCCTTTGATAGCGACCAAGGCAATGGTTGATA
AGTTTGGTAACGTGAGCGCGCAGCAGTATGTATGATCACGTTGCGCCCGT
GTCGTACGACTCATTTCAACCATTGTCACTCGAGACACCAACCTGTATCA
TTCCCCAATCCTGCATTGACCATTGCTGTAAATTGTCACTGTTGTGGTTC
ACCTTTCTTGCATACTTTCTTATTTTCTTTTTATCTTCTGGCAGACAGTT
AAAATTAAAGGTTAAACTCACCACAATTCCACGTTTAGATTTCGTGCCGT
GTGTCAACTTACCCCATAGCTCCCGTTGCTACAGCAGAGCAGGCTACTGT
TGCCACCGGCTCTTGAGCACGTTATATTTGTCGTCGAGCTTCCCCTCTCA
AGTCCCGAGACGGTTAAGCCACATAAAAAGCTCACCATAGTCGACATAGG
GATACAGTGCTGTACCCATTTTTAAGACCCCCTCCTGTGAAAAGCCCCCA
AAACGCGGTCTTCTCTCTATTACGGGGGTCCATAGTTAATAGGACCTATG
GTTTACGTAAAAACCTATATATTTATCTATTTTTACTAACAATATTTGGT
CCTGTTAACTATGGACCCCCGTAGTAGTACGATTTTATCTTGTATTACTG
AAATAATATTATCCCATACTACTTCTAAGCTGTTGCTTTTTTTCCCGTGA
CAAGTCGATTTCACCTGGCCTTGTCTCTACTATGGCGTTGAAACCGGATG
GTCTGAAACTGGATACCCACCACATTTGTTTTTTTAGTTGTTTGTTCTTC
CCATTTATCATGTTCGCCCTTCTTTTCTCTCCCCCCCTCCCATCACAGCA
GTCGTATCTCTGATCCGGGGACATTAAAAGCGGGCTCTTCTCCCCCCTCT
CCACTACGGCTCGTGTCTTTCATTTGTTTCGCGAGAAAGACTTCAGCCAT
TCTTCCCTCGTCGACTCGAGTCGGACACCACTGCTGTACGTGTCACGAAC
TCTATTGTGAAAAAAAAAAAAAAAAAAAAACTCAAATGGGATTCCAACAG
CAATATTGGCTACTTCTTCGGTTAAGGAGTCGGCCTCCCGTCAGCCAGGA
AAAAATAAATCAAACCTCGGTTTTGATAGGTGAGGATCTGCAGATCATAC
AGATGATCATCTAGCTCCTCACCCGCCGTTGTGAGAGGTTGTCGCGCAGG
ATCTGCACGATGCAGATCCAACTCAGAAAACGTGAGCTACGTAGACCATG
CAAAACAAACAGGTCCCCTACCGACCGGCAAGGTCCCCTACCGACCGGCA
ACATGAGCTAGATCACACAGATAATACCAGGCCGGGAATAGATCTGCCTT
GAAAGGTCGAAATCATTAACTGGGAATGATCTGTGGGATCTGTGGGATCT
GTCGATGATCTGCCCGAGGTATGAAAGGTTTTTACCAAGACAAATGCTGC
GTACGCCTCTCCTGTCACGCCCCGTTCGCGGTCTGTTTTTGTTTTTTGTG
ACGCGCTCTCGCCCGCGAACTGATTCGGCCCAGGTGGACGTGGCGGCGAT
TTCCGCGGTCCAAGCCGCCTTCGCGCGCGGCTTTCCGTTTCAAAAGCACG
GCAGAAAGTTCGAGGAGACTTCCGTGCGATCGTCGCTCAAGGACCTGATG
GTATCTGACGGTCCCGCGAGGCTCATCGGGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig12649:229..3461-

>mRNA_M-pyrifera_M_contig12649.5344.1 ID=mRNA_M-pyrifera_M_contig12649.5344.1|Name=mRNA_M-pyrifera_M_contig12649.5344.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=336bp|location=Sequence derived from alignment at M-pyrifera_M_contig12649:229..3461- (Macrocystis pyrifera P11B4 male)
ATGCTCGACCCCCCACATATGCTCGACCCCCCACATGTGGACGTGGCGGC
GATTTCCGCGGTCCAAGCCGCCTTCGCGCGCGGCTTTCCGTTTCAAAAGC
ACGGCAGAAAGTTCGAGGAGACTTCCGTGCGATCGTCGCTCAAGGACCTG
ATGGTATCTGACGGTCCCGCGAGGCTCATCGGGTGAGTGGACGTGGCGGC
GATTTCCGCGGTCCAAGCCGCCTTCGCGCGCGGCTTTCCGTTTCAAAAGC
ACGGCAGAAAGTTCGAGGAGACTTCCGTGCGATCGTCGCTCAAGGACCTG
ATGGTATCTGACGGTCCCGCGAGGCTCATCGGGTGA
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