mRNA_M-pyrifera_M_contig126478.5339.1 (mRNA) Macrocystis pyrifera P11B4 male
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Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig126478.5339.1 vs. uniprot
Match: A0A517PZL8_9PLAN (ECF RNA polymerase sigma factor SigL n=17 Tax=Planctomycetaceae TaxID=126 RepID=A0A517PZL8_9PLAN) HSP 1 Score: 293 bits (749), Expect = 1.650e-99 Identity = 152/155 (98.06%), Postives = 154/155 (99.35%), Query Frame = 1
Query: 1 TSERLLRYAVTVTRNTPDAEDAIQATMVRIAMRPKILATAQQPWAYLLRVARNEALRILQKRKPLQIFAQCRQLWSRDEEIVEENDQAQVIRQALKRLPTNQSEVVVLKIWEDMTFAEIASVLDESPNTVASRYRYALQKLDNYLRPMAREDINV 465
TSERLLRYAVTVTRNTPDAEDAIQATMVRIAMRPKILATAQQPWAYLLRVARNEALRILQKRKPLQIFAQCRQLWSRDEE+VEENDQA VIR+ALKRLPTNQSEVVVLKIWEDMTFAEIASVLDESPNTVASRYRYALQKLDNYLRPMAREDINV
Sbjct: 35 TSERLLRYAVTVTRNTPDAEDAIQATMVRIAMRPKILATAQQPWAYLLRVARNEALRILQKRKPLQIFAQCRQLWSRDEEVVEENDQALVIRRALKRLPTNQSEVVVLKIWEDMTFAEIASVLDESPNTVASRYRYALQKLDNYLRPMAREDINV 189
BLAST of mRNA_M-pyrifera_M_contig126478.5339.1 vs. uniprot
Match: A0A518I4V0_9PLAN (ECF RNA polymerase sigma factor SigL n=3 Tax=Gimesia TaxID=1649453 RepID=A0A518I4V0_9PLAN) HSP 1 Score: 278 bits (710), Expect = 6.810e-94 Identity = 141/155 (90.97%), Postives = 150/155 (96.77%), Query Frame = 1
Query: 1 TSERLLRYAVTVTRNTPDAEDAIQATMVRIAMRPKILATAQQPWAYLLRVARNEALRILQKRKPLQIFAQCRQLWSRDEEIVEENDQAQVIRQALKRLPTNQSEVVVLKIWEDMTFAEIASVLDESPNTVASRYRYALQKLDNYLRPMAREDINV 465
T+ RL+RYAVTVT+N+PDAEDAIQATMVR+AM+PKILATAQQPWAYLLRV RNEALRILQKRKPLQIFAQCRQLWSRD E+VEENDQAQVIR ALKRLPTNQSEVVVLKIWEDMTFAEIASVLDESPNTVASRYRYALQKLDNYLRPMA EDI++
Sbjct: 11 TATRLVRYAVTVTKNSPDAEDAIQATMVRMAMKPKILATAQQPWAYLLRVTRNEALRILQKRKPLQIFAQCRQLWSRDSEVVEENDQAQVIRNALKRLPTNQSEVVVLKIWEDMTFAEIASVLDESPNTVASRYRYALQKLDNYLRPMAHEDIDI 165
BLAST of mRNA_M-pyrifera_M_contig126478.5339.1 vs. uniprot
Match: A0A517R832_9PLAN (ECF RNA polymerase sigma factor SigL n=1 Tax=Gimesia alba TaxID=2527973 RepID=A0A517R832_9PLAN) HSP 1 Score: 279 bits (714), Expect = 3.220e-93 Identity = 142/155 (91.61%), Postives = 150/155 (96.77%), Query Frame = 1
Query: 1 TSERLLRYAVTVTRNTPDAEDAIQATMVRIAMRPKILATAQQPWAYLLRVARNEALRILQKRKPLQIFAQCRQLWSRDEEIVEENDQAQVIRQALKRLPTNQSEVVVLKIWEDMTFAEIASVLDESPNTVASRYRYALQKLDNYLRPMAREDINV 465
T+ RL+RYAVTVT+NTPDAEDAIQATMVR+AM+PKILATAQQPWAYLLRV RNEALRILQKRKPLQIFAQCRQLWSRD E+VEENDQAQVIR ALKRLPTNQSEVVVLKIWEDMTFAEIASVLDESPNTVASRYRYALQKLDNYLRPMA EDI++
Sbjct: 98 TATRLVRYAVTVTKNTPDAEDAIQATMVRMAMKPKILATAQQPWAYLLRVTRNEALRILQKRKPLQIFAQCRQLWSRDSEVVEENDQAQVIRNALKRLPTNQSEVVVLKIWEDMTFAEIASVLDESPNTVASRYRYALQKLDNYLRPMAHEDIDI 252
BLAST of mRNA_M-pyrifera_M_contig126478.5339.1 vs. uniprot
Match: A0A517X3N0_9PLAN (ECF RNA polymerase sigma factor SigL n=2 Tax=Gimesia aquarii TaxID=2527964 RepID=A0A517X3N0_9PLAN) HSP 1 Score: 271 bits (694), Expect = 4.100e-91 Identity = 139/155 (89.68%), Postives = 147/155 (94.84%), Query Frame = 1
Query: 1 TSERLLRYAVTVTRNTPDAEDAIQATMVRIAMRPKILATAQQPWAYLLRVARNEALRILQKRKPLQIFAQCRQLWSRDEEIVEENDQAQVIRQALKRLPTNQSEVVVLKIWEDMTFAEIASVLDESPNTVASRYRYALQKLDNYLRPMAREDINV 465
T+ RL+RYAVTVT+NT DAEDAIQATMVRIAMRPKILATAQQPWAYLLRV RNEALRILQKRKPLQIF+QC+QLWSRD VEEND+AQVIR+ALKRLPTNQSEVVVLKIWEDMTFAEIA+VLDESPNTVASRYRYALQKLDNYLRP REDINV
Sbjct: 36 TAHRLIRYAVTVTKNTADAEDAIQATMVRIAMRPKILATAQQPWAYLLRVTRNEALRILQKRKPLQIFSQCKQLWSRDSATVEENDEAQVIRRALKRLPTNQSEVVVLKIWEDMTFAEIANVLDESPNTVASRYRYALQKLDNYLRPTTREDINV 190
BLAST of mRNA_M-pyrifera_M_contig126478.5339.1 vs. uniprot
Match: A0A517ZGU2_9PLAN (ECF RNA polymerase sigma factor SigL n=2 Tax=Symmachiella TaxID=2795780 RepID=A0A517ZGU2_9PLAN) HSP 1 Score: 155 bits (391), Expect = 4.590e-45 Identity = 84/151 (55.63%), Postives = 105/151 (69.54%), Query Frame = 1
Query: 1 TSERLLRYAVTVTRNTPDAEDAIQATMVRIAMRPKILATAQQPWAYLLRVARNEALRILQKRKPLQIFAQCRQLWSRDEEIVEENDQAQVIRQALKRLPTNQSEVVVLKIWEDMTFAEIASVLDESPNTVASRYRYALQKLDNYLRPMARE 453
T+ RLLRYA T+TRN DAEDA+QA MVR+ +RPK LA A PW Y L+V RNEAL+IL+K++ A + + +++ + IR A++ LP Q EVVVLKIWE MTF EIA VL ESPNT ASRYRYAL+KL + L+PMA E
Sbjct: 35 TASRLLRYAETLTRNREDAEDALQAAMVRMTLRPKALAGADHPWPYFLKVVRNEALKILRKKRAACSLATVAPIGVTESCQLDQQEANAQIRAAIRELPPAQGEVVVLKIWEGMTFLEIAEVLGESPNTAASRYRYALEKLTHILQPMANE 185
BLAST of mRNA_M-pyrifera_M_contig126478.5339.1 vs. uniprot
Match: A0A5C6DDK0_9BACT (ECF RNA polymerase sigma factor SigL n=1 Tax=Novipirellula artificiosorum TaxID=2528016 RepID=A0A5C6DDK0_9BACT) HSP 1 Score: 154 bits (389), Expect = 8.950e-45 Identity = 81/155 (52.26%), Postives = 110/155 (70.97%), Query Frame = 1
Query: 1 TSERLLRYAVTVTRNTPDAEDAIQATMVRIAMRPKILATAQQPWAYLLRVARNEALRILQKRKPLQIFAQCRQLWSR-DEEIVEENDQAQVIRQALKRLPTNQSEVVVLKIWEDMTFAEIASVLDESPNTVASRYRYALQKLDNYLRPMAREDIN 462
T++RL+RYA T+T N DAEDA+ A +VR+A P++L A++PWAYLLR+ RNE+L IL+K+K + L +R + +E DQ + + AL+ LPT QSEVVVLKIWEDMTFA+I+ VL+ SP+T ASRYRYA++KL LR E I+
Sbjct: 33 TAQRLVRYATTITANQHDAEDAVSAALVRVAREPRLLCRAERPWAYLLRMVRNESLLILRKKKRWSLLGDLSDLLTRRSSDPIEIEDQQRAVWSALRSLPTEQSEVVVLKIWEDMTFAQISEVLEVSPSTAASRYRYAIEKLSGKLRSSDAEVIH 187
BLAST of mRNA_M-pyrifera_M_contig126478.5339.1 vs. uniprot
Match: A0A3N5S6B1_9PLAN (Sigma-70 family RNA polymerase sigma factor n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A3N5S6B1_9PLAN) HSP 1 Score: 152 bits (384), Expect = 3.460e-44 Identity = 83/151 (54.97%), Postives = 107/151 (70.86%), Query Frame = 1
Query: 1 TSERLLRYAVTVTRNTPDAEDAIQATMVRIAMRPKILATAQQPWAYLLRVARNEALRILQKRKPLQIFAQCRQLWSRDEEIVEENDQAQVIRQALKRLPTNQSEVVVLKIWEDMTFAEIASVLDESPNTVASRYRYALQKLDNYLRPMARE 453
T+ R LR+A T+TRN DAEDA+QA MVR+A+ P LA A PWAYLLR+ RNEAL+I KR+ Q+ + DE ++ D + +++A+++LP QSEVVVLK+WE +TFAEIA VL ESPNT ASRYRYALQKL L+P+ E
Sbjct: 23 TASRSLRFAATLTRNQHDAEDAVQAAMVRVALHPGKLARADHPWAYLLRIVRNEALKINLKRRNDQVLTLMNE--QGDEPALDLADARRFVQKAVEQLPAAQSEVVVLKVWEGLTFAEIAEVLGESPNTAASRYRYALQKLTLTLQPLVEE 171
BLAST of mRNA_M-pyrifera_M_contig126478.5339.1 vs. uniprot
Match: UPI001421D957 (RNA polymerase sigma factor n=1 Tax=Rubinisphaera sp. JC658 TaxID=2713176 RepID=UPI001421D957) HSP 1 Score: 150 bits (379), Expect = 2.590e-43 Identity = 84/154 (54.55%), Postives = 108/154 (70.13%), Query Frame = 1
Query: 1 TSERLLRYAVTVTRNTPDAEDAIQATMVRIAMRPKILATAQQPWAYLLRVARNEALRILQKRKPLQIFAQCRQLWSRDEEIVEENDQAQV---IRQALKRLPTNQSEVVVLKIWEDMTFAEIASVLDESPNTVASRYRYALQKLDNYLRPMARE 453
T+ RL+RYA +TR+ DAED QA VR+A RP L A PWAYLLR+ RNEA R+L +RKP+ + + + E+ E DQ ++ I+ AL++LP QSEVVVLK+WE+MTFAEIA+V+DESPNT+ASRYRYALQKL L +A E
Sbjct: 30 TASRLVRYAYALTRHRDDAEDVFQAAFVRVARRPHGLVRADYPWAYLLRIVRNEAFRLLSRRKPVPLPSI---VLESHVEVGIELDQEELRRHIQVALEKLPITQSEVVVLKVWEEMTFAEIAAVMDESPNTIASRYRYALQKLQPMLESLANE 180
BLAST of mRNA_M-pyrifera_M_contig126478.5339.1 vs. uniprot
Match: A0A7C4QPF3_9PLAN (Sigma-70 family RNA polymerase sigma factor n=1 Tax=Schlesneria paludicola TaxID=360056 RepID=A0A7C4QPF3_9PLAN) HSP 1 Score: 148 bits (374), Expect = 1.280e-42 Identity = 81/151 (53.64%), Postives = 106/151 (70.20%), Query Frame = 1
Query: 1 TSERLLRYAVTVTRNTPDAEDAIQATMVRIAMRPKILATAQQPWAYLLRVARNEALRILQKRKPLQIFAQCRQLWSRDEEIVEENDQAQVIRQALKRLPTNQSEVVVLKIWEDMTFAEIASVLDESPNTVASRYRYALQKLDNYLRPMARE 453
T+ RLLRYA T+TR+ DAEDA+QA +VRIA P+ LA AQ+PWAYLL+V RNE LR++ +R+P + + E + +Q ++ AL+RLP Q+EVVV KIWE++TF EIA++ ESPNTVASRYRYAL KL LR +A E
Sbjct: 24 TAPRLLRYAQTLTRSRDDAEDAVQAAIVRIAQHPQSLAAAQRPWAYLLKVVRNETLRLMARRQPGLALTEDQAARHPAESPLCLREQQAEVQAALRRLPVEQAEVVVFKIWEELTFQEIAAITGESPNTVASRYRYALAKLGTSLRRLAVE 174
BLAST of mRNA_M-pyrifera_M_contig126478.5339.1 vs. uniprot
Match: A0A7D8YAZ6_9PLAN (Sigma-70 family RNA polymerase sigma factor n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A7D8YAZ6_9PLAN) HSP 1 Score: 146 bits (368), Expect = 1.660e-41 Identity = 84/149 (56.38%), Postives = 106/149 (71.14%), Query Frame = 1
Query: 1 TSERLLRYAVTVTRNTPDAEDAIQATMVRIAMRPKILATAQQPWAYLLRVARNEALRILQ-KRKPLQIFAQCRQLWSRDEEIVEENDQAQVIRQALKRLPTNQSEVVVLKIWEDMTFAEIASVLDESPNTVASRYRYALQKLDNYLRPM 444
T+ RL+RY+VT+TRN DAEDA+QAT+VR+A P+ L A+QPWAYLLR+ RNE+L IL+ KR+ + + L R + VE + + I AL+ LPT QSEVVVLKIWE MTFA+IA VLD +P T ASRYRYAL KL L P+
Sbjct: 33 TAVRLVRYSVTITRNQHDAEDAVQATLVRVADSPRTLDRAEQPWAYLLRMVRNESLVILRRKRRWTSLLSLSDLLTRRGVDEVEHEETYREIWTALRTLPTEQSEVVVLKIWEAMTFAQIADVLDVAPATAASRYRYALDKLARKLGPL 181 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig126478.5339.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig126478.5339.1 >prot_M-pyrifera_M_contig126478.5339.1 ID=prot_M-pyrifera_M_contig126478.5339.1|Name=mRNA_M-pyrifera_M_contig126478.5339.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=156bp TSERLLRYAVTVTRNTPDAEDAIQATMVRIAMRPKILATAQQPWAYLLRVback to top mRNA from alignment at M-pyrifera_M_contig126478:3..470+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig126478.5339.1 ID=mRNA_M-pyrifera_M_contig126478.5339.1|Name=mRNA_M-pyrifera_M_contig126478.5339.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=468bp|location=Sequence derived from alignment at M-pyrifera_M_contig126478:3..470+ (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig126478:3..470+ >mRNA_M-pyrifera_M_contig126478.5339.1 ID=mRNA_M-pyrifera_M_contig126478.5339.1|Name=mRNA_M-pyrifera_M_contig126478.5339.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=936bp|location=Sequence derived from alignment at M-pyrifera_M_contig126478:3..470+ (Macrocystis pyrifera P11B4 male)back to top |