mRNA_M-pyrifera_M_contig126404.5321.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig126404.5321.1
Unique NamemRNA_M-pyrifera_M_contig126404.5321.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig126404.5321.1 vs. uniprot
Match: A0A7S2NUD0_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2NUD0_9STRA)

HSP 1 Score: 137 bits (345), Expect = 1.410e-37
Identity = 70/122 (57.38%), Postives = 89/122 (72.95%), Query Frame = 1
Query:   25 VVLNVYDLAPYNEM-LWPLGLGAFHSGVEVEGEEFSFSDG-GIFSSTPRDVPNARFRTAIHMGSTTMTSSQVRDVVSTLRGLFPPGSYNVIRKNCNSFANEFSYRLVRKEIPGWVNRMAYFG 384
            VVLNVYDL+P NE  L+ LGLG  HSGVE+ G+E+SF+ G GIF STP+ VPNA+FR +I MGS    ++++R  +S LR  F P  YN++RKNCN FAN   +RL+RK IPG VNR+A  G
Sbjct:   18 VVLNVYDLSPANESCLYSLGLGVHHSGVEILGQEYSFASGAGIFDSTPKQVPNAKFRESIKMGSFDGGAAEIRSAISDLRQNFGPEDYNLVRKNCNHFANALCWRLLRKPIPGHVNRIADIG 139          
BLAST of mRNA_M-pyrifera_M_contig126404.5321.1 vs. uniprot
Match: D7G204_ECTSI (PPPDE domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G204_ECTSI)

HSP 1 Score: 131 bits (330), Expect = 1.860e-35
Identity = 64/123 (52.03%), Postives = 85/123 (69.11%), Query Frame = 1
Query:   22 DVVLNVYDLAPYNEMLWPLGLGAFHSGVEVEGEEFSFSDGG-IFSSTPRDVPNARFRTAIHMGSTTMTSSQVRDVVSTLRGLFPPGSYNVIRKNCNSFANEFSYRLVRKEIPGWVNRMAYFGA 387
            +V LNVYDL+P NE   P+GLG FHSG+EV+G E++F+ GG IF   PR  P ARFR A++MGS T  SS +   + +LR  F P  YNV+ +NCNSF++     LV K IPG+VNR+A+ G+
Sbjct:   10 EVTLNVYDLSPVNEFGHPIGLGVFHSGLEVDGREYTFAGGGGIFDHEPRKAPGARFREAVNMGSFTGGSSSLSRAIDSLREEFGPDRYNVLTRNCNSFSSALCEELVGKPIPGYVNRLAWMGS 132          
BLAST of mRNA_M-pyrifera_M_contig126404.5321.1 vs. uniprot
Match: A0A5A8DIA0_CAFRO (PPPDE domain-containing protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DIA0_CAFRO)

HSP 1 Score: 127 bits (319), Expect = 2.910e-35
Identity = 64/127 (50.39%), Postives = 85/127 (66.93%), Query Frame = 1
Query:    4 RRRRTIDVVLNVYDLAPYNEMLWPLGLGAFHSGVEVEGEEFSFSDGGIFSSTPRDVPNARFRTAIHMGSTTMTSSQVRDVVSTLRGLFPPGSYNVIRKNCNSFANEFSYRLVRKEIPGWVNRMAYFG 384
            RRR    V+LNVYDL P NE L  LGLGA+HSGVEV G E++F++GG+FS+TP+D   A     I +G T   S  V  +V  LR  FP G+Y++++KNCNSF+   + +L+ + IPGWVNR A  G
Sbjct:    6 RRRVGEPVLLNVYDLHPANEHLRFLGLGAYHSGVEVFGSEYTFANGGVFSTTPKDANGAPLCETIVLGETFEGSRDVERMVDELRRDFPAGTYHLLKKNCNSFSEALARKLLNRSIPGWVNRSATLG 132          
BLAST of mRNA_M-pyrifera_M_contig126404.5321.1 vs. uniprot
Match: A0A7S1CA67_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CA67_9STRA)

HSP 1 Score: 129 bits (324), Expect = 1.240e-34
Identity = 63/129 (48.84%), Postives = 84/129 (65.12%), Query Frame = 1
Query:    4 RRRRTIDVVLNVYDLAPYNEMLWPLGLGAFHSGVEVEGEEFSF-SDGGIFSSTPRDVPNARFRTAIHMGSTTMTSSQVRDVVSTLRGLFPPGSYNVIRKNCNSFANEFSYRLVRKEIPGWVNRMAYFGA 387
            RRR    V LNVYDL+P N+ LW LGLGAFHSG+EV G E+SF + GG+FS  P+    A+FR  +++G   M   +V  VVS +RG +   +YNV+  NCNSF +     L+   +PGWVNR+AY G+
Sbjct:   76 RRRAAEPVYLNVYDLSPVNDYLWGLGLGAFHSGLEVYGTEYSFGAGGGVFSHPPKAAEGAKFRERVYLGDVVMGYREVEAVVSGMRGDWGGDAYNVLTNNCNSFCDALCRNLLGHGLPGWVNRLAYLGS 204          
BLAST of mRNA_M-pyrifera_M_contig126404.5321.1 vs. uniprot
Match: A0A812QVB6_9DINO (Hypothetical protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812QVB6_9DINO)

HSP 1 Score: 128 bits (322), Expect = 3.020e-34
Identity = 63/127 (49.61%), Postives = 89/127 (70.08%), Query Frame = 1
Query:    7 RRRTIDVVLNVYDLAPYNEMLWPLGLGAFHSGVEVEGEEFSF-SDGGIFSSTPRDVPNARFRTAIHMGSTTMTSSQVRDVVSTLRGLFPPGSYNVIRKNCNSFANEFSYRLVRKEIPGWVNRMAYFG 384
            RR    V+LNVYDL   NE L+P+GLG +HSGV+V G+E++F S  G+F+  P+    A FR +I +G+T M+SS+V  +V+T+R  +P   Y+VIRKNCNSFA+  S +++  +IP WVNRMA  G
Sbjct:    8 RRHHEKVILNVYDLGNSNEYLYPIGLGTYHSGVQVHGKEWTFASQAGVFNHAPKGAQGAVFRQSIVLGTTQMSSSEVASLVATMRPDWPGKQYHVIRKNCNSFASALSKQILGTDIPAWVNRMADLG 134          
BLAST of mRNA_M-pyrifera_M_contig126404.5321.1 vs. uniprot
Match: C4LV44_ENTHI (PPPDE domain-containing protein n=7 Tax=Entamoeba TaxID=5758 RepID=C4LV44_ENTHI)

HSP 1 Score: 126 bits (316), Expect = 4.140e-34
Identity = 62/122 (50.82%), Postives = 87/122 (71.31%), Query Frame = 1
Query:   22 DVVLNVYDLAPYNEMLWPLGLGAFHSGVEVEGEEFSFSDGGIFSSTPRDVPNARFRTAIHMGSTTMTSSQVRDVVSTLRGLFPPGSYNVIRKNCNSFANEFSYRLVRKEIPGWVNRMAYFGA 387
            +V+L+VYDL   N  L+P+G+GA+HSGV + G E+SFSDGGIF + P+DV  A FRT+I+MG    +    + VV +LR  F PG+YN+  KNCN F+N    +LV++ IP WVNRMA++G+
Sbjct:    9 EVILHVYDLMD-NTYLYPVGMGAYHSGVCIFGREYSFSDGGIFDTRPKDV-EAPFRTSINMGMFRGSYKDFQYVVDSLRSEFAPGTYNLYNKNCNCFSNALCLKLVQQPIPTWVNRMAWYGS 128          
BLAST of mRNA_M-pyrifera_M_contig126404.5321.1 vs. uniprot
Match: A0A7S1YZ49_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1YZ49_TRICV)

HSP 1 Score: 124 bits (311), Expect = 9.580e-34
Identity = 58/128 (45.31%), Postives = 82/128 (64.06%), Query Frame = 1
Query:    4 RRRRTIDVVLNVYDLAPYNEMLWPLGLGAFHSGVEVEGEEFSFSDG-GIFSSTPRDVPNARFRTAIHMGSTTMTSSQVRDVVSTLRGLFPPGSYNVIRKNCNSFANEFSYRLVRKEIPGWVNRMAYFG 384
            R R    V+LN+YDL P NE L+P+G G  HSGVE+ G E+SF+ G G+F STPR+ P ARFR ++ +G+    S   R V+  LR  F P  YN++++NCN FA+   + L+ + IP  +NR+A  G
Sbjct:    7 RTRMGTKVMLNLYDLTPANEYLYPIGFGLHHSGVEIGGTEYSFASGAGVFDSTPREAPGARFRESVELGTYEGGSGDARVVIDDLRSSFGPSDYNLLKRNCNHFADALCWALLGRRIPAHINRLADIG 134          
BLAST of mRNA_M-pyrifera_M_contig126404.5321.1 vs. uniprot
Match: A0A5A8C1B2_CAFRO (PPPDE domain-containing protein n=3 Tax=Sar TaxID=2698737 RepID=A0A5A8C1B2_CAFRO)

HSP 1 Score: 127 bits (319), Expect = 1.630e-33
Identity = 64/127 (50.39%), Postives = 85/127 (66.93%), Query Frame = 1
Query:    4 RRRRTIDVVLNVYDLAPYNEMLWPLGLGAFHSGVEVEGEEFSFSDGGIFSSTPRDVPNARFRTAIHMGSTTMTSSQVRDVVSTLRGLFPPGSYNVIRKNCNSFANEFSYRLVRKEIPGWVNRMAYFG 384
            RRR    V+LNVYDL P NE L  LGLGA+HSGVEV G E++F++GG+FS+TP+D   A     I +G T   S  V  +V  LR  FP G+Y++++KNCNSF+   + +L+ + IPGWVNR A  G
Sbjct:    6 RRRVGEPVLLNVYDLHPANEHLRFLGLGAYHSGVEVFGSEYTFANGGVFSTTPKDANGAPLCETIVLGETFEGSRDVERMVDELRRDFPAGTYHLLKKNCNSFSEALARKLLNRSIPGWVNRSATLG 132          
BLAST of mRNA_M-pyrifera_M_contig126404.5321.1 vs. uniprot
Match: K0RSF7_THAOC (PPPDE domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RSF7_THAOC)

HSP 1 Score: 126 bits (316), Expect = 1.010e-32
Identity = 63/128 (49.22%), Postives = 85/128 (66.41%), Query Frame = 1
Query:    4 RRRRTIDVVLNVYDLAPYNEMLWPLGLGAFHSGVEVEGEEFSF-SDGGIFSSTPRDVPNARFRTAIHMGSTTMTSSQVRDVVSTLRGLFPPGSYNVIRKNCNSFANEFSYRLVRKEIPGWVNRMAYFG 384
            R R    V+LNVYDL+P NE L  +GLG  HSGVEV G E+SF S GG+F S+P++ P A+FR +I +G     S+++   +  LR  F P  YN+IR+NCN FAN   +RL+ + IPG VNR+A +G
Sbjct:  101 RTRMGTSVILNVYDLSPANEYLCSVGLGLHHSGVEVLGREYSFASGGGVFDSSPKEAPGAKFRESIELGHFEGGSAELNAAIGDLREEFGPDRYNLIRRNCNHFANALVWRLLGRTIPGHVNRLADYG 228          
BLAST of mRNA_M-pyrifera_M_contig126404.5321.1 vs. uniprot
Match: A0A7S2BXA3_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BXA3_9STRA)

HSP 1 Score: 123 bits (308), Expect = 1.900e-32
Identity = 61/128 (47.66%), Postives = 83/128 (64.84%), Query Frame = 1
Query:    4 RRRRTIDVVLNVYDLAPYNEMLWPLGLGAFHSGVEVEGEEFSFSDG-GIFSSTPRDVPNARFRTAIHMGSTTMTSSQVRDVVSTLRGLFPPGSYNVIRKNCNSFANEFSYRLVRKEIPGWVNRMAYFG 384
            RR+    VVLNVYDL+  NE+ +  GLGA+HSGVE+   E++F+ G GIF +TPRD P ARFR +I +G+       +   +  L+  F P SYNVI KNCN F++  S +L+   IPGWVNR++  G
Sbjct:   22 RRQAQTSVVLNVYDLSEANELGYSCGLGAYHSGVEIGDREYTFAGGAGIFDTTPRDAPGARFRESITLGTFEGGQGALSRALDELKPFFDPSSYNVITKNCNHFSDALSRQLLDTPIPGWVNRLSNIG 149          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig126404.5321.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2NUD0_9STRA1.410e-3757.38Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
D7G204_ECTSI1.860e-3552.03PPPDE domain-containing protein n=2 Tax=Ectocarpus... [more]
A0A5A8DIA0_CAFRO2.910e-3550.39PPPDE domain-containing protein n=1 Tax=Cafeteria ... [more]
A0A7S1CA67_9STRA1.240e-3448.84Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A812QVB6_9DINO3.020e-3449.61Hypothetical protein n=1 Tax=Symbiodinium sp. KB8 ... [more]
C4LV44_ENTHI4.140e-3450.82PPPDE domain-containing protein n=7 Tax=Entamoeba ... [more]
A0A7S1YZ49_TRICV9.580e-3445.31Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]
A0A5A8C1B2_CAFRO1.630e-3350.39PPPDE domain-containing protein n=3 Tax=Sar TaxID=... [more]
K0RSF7_THAOC1.010e-3249.22PPPDE domain-containing protein n=1 Tax=Thalassios... [more]
A0A7S2BXA3_9STRA1.900e-3247.66Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig126404contigM-pyrifera_M_contig126404:34..495 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score131.3
Seed ortholog evalue3.2e-28
Seed eggNOG ortholog2880.D7G204
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Lys63-specific deubiquitinase activity
EggNOG OGsKOG0324@1,KOG0324@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size387
Cds size387
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815778.5040143-CDS-M-pyrifera_M_contig126404:33..3291622815778.5040143-CDS-M-pyrifera_M_contig126404:33..329Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig126404 34..329 +
1692277565.1454153-CDS-M-pyrifera_M_contig126404:33..3291692277565.1454153-CDS-M-pyrifera_M_contig126404:33..329Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig126404 34..329 +
1622815778.5142756-CDS-M-pyrifera_M_contig126404:404..4951622815778.5142756-CDS-M-pyrifera_M_contig126404:404..495Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig126404 405..495 +
1692277565.1568162-CDS-M-pyrifera_M_contig126404:404..4951692277565.1568162-CDS-M-pyrifera_M_contig126404:404..495Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig126404 405..495 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig126404.5321.1prot_M-pyrifera_M_contig126404.5321.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig126404 34..495 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig126404.5321.1

>prot_M-pyrifera_M_contig126404.5321.1 ID=prot_M-pyrifera_M_contig126404.5321.1|Name=mRNA_M-pyrifera_M_contig126404.5321.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=129bp
MRRRRTIDVVLNVYDLAPYNEMLWPLGLGAFHSGVEVEGEEFSFSDGGIF
SSTPRDVPNARFRTAIHMGSTTMTSSQVRDVVSTLRGLFPPGSYNVIRKN
CNSFANEFSYRLVRKEIPGWVNRMAYFGA
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mRNA from alignment at M-pyrifera_M_contig126404:34..495+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig126404.5321.1 ID=mRNA_M-pyrifera_M_contig126404.5321.1|Name=mRNA_M-pyrifera_M_contig126404.5321.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=462bp|location=Sequence derived from alignment at M-pyrifera_M_contig126404:34..495+ (Macrocystis pyrifera P11B4 male)
ATGCGGCGCCGCAGGACGATCGATGTGGTGTTGAACGTGTACGACTTGGC GCCTTACAATGAGATGCTGTGGCCGTTGGGTCTGGGTGCGTTCCATTCGG GCGTGGAGGTGGAGGGAGAGGAGTTCTCGTTTTCCGATGGAGGTATTTTC AGCTCTACGCCCAGGGACGTCCCCAACGCTCGGTTCCGGACTGCGATCCA CATGGGCAGTACAACTATGACCTCATCTCAGGTCCGGGATGTCGTTTCCA CGCTGCGTGGCCTGTTCCCGCCGGGTTCTTACAACGTGATTCGCAAGTCG GTATCTTCGCAGCTCGTTTGGCGCCGCGCAGCCAATGCCTCACCCTGCCC TGCTTCCCTGCTGTCCTCCAGGAACTGCAACTCGTTCGCCAACGAGTTCA GCTACCGTCTCGTGCGTAAGGAGATCCCTGGCTGGGTGAACCGCATGGCG TACTTTGGTGCG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig126404:34..495+

>mRNA_M-pyrifera_M_contig126404.5321.1 ID=mRNA_M-pyrifera_M_contig126404.5321.1|Name=mRNA_M-pyrifera_M_contig126404.5321.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=774bp|location=Sequence derived from alignment at M-pyrifera_M_contig126404:34..495+ (Macrocystis pyrifera P11B4 male)
ATGCGGCGCCGCAGGACGATCGATGTGGTGTTGAACGTGTACGACTTGGC
GCCTTACAATGAGATGCTGTGGCCGTTGGGTCTGGGTGCGTTCCATTCGG
GCGTGGAGGTGGAGGGAGAGGAGTTCTCGTTTTCCGATGGAGGTATTTTC
AGCTCTACGCCCAGGGACGTCCCCAACGCTCGGTTCCGGACTGCGATCCA
CATGGGCAGTACAACTATGACCTCATCTCAGGTCCGGGATGTCGTTTCCA
CGCTGCGTGGCCTGTTCCCGCCGGGTTCTTACAACGTGATTCGCAAATGC
GGCGCCGCAGGACGATCGATGTGGTGTTGAACGTGTACGACTTGGCGCCT
TACAATGAGATGCTGTGGCCGTTGGGTCTGGGTGCGTTCCATTCGGGCGT
GGAGGTGGAGGGAGAGGAGTTCTCGTTTTCCGATGGAGGTATTTTCAGCT
CTACGCCCAGGGACGTCCCCAACGCTCGGTTCCGGACTGCGATCCACATG
GGCAGTACAACTATGACCTCATCTCAGGTCCGGGATGTCGTTTCCACGCT
GCGTGGCCTGTTCCCGCCGGGTTCTTACAACGTGATTCGCAAGAACTGCA
ACTCGTTCGCCAACGAGTTCAGCTACCGTCTCGTGCGTAAGGAGATCCCT
GGCTGGGTGAACCGCATGGCGTACTTTGGTGCGGAACTGCAACTCGTTCG
CCAACGAGTTCAGCTACCGTCTCGTGCGTAAGGAGATCCCTGGCTGGGTG
AACCGCATGGCGTACTTTGGTGCG
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