mRNA_M-pyrifera_M_contig126290.5309.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig126290.5309.1
Unique NamemRNA_M-pyrifera_M_contig126290.5309.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig126290.5309.1 vs. uniprot
Match: A0A2E7KM13_9PLAN (Uncharacterized protein n=6 Tax=Gimesia TaxID=1649453 RepID=A0A2E7KM13_9PLAN)

HSP 1 Score: 305 bits (781), Expect = 1.330e-93
Identity = 149/154 (96.75%), Postives = 151/154 (98.05%), Query Frame = 1
Query:    1 LTAYRERLLDHTAACLNAALEVETATAAVNLEKLAQKHDIEPVILHAWLASLGLDGGQPTIEGYITRQTEQIQNYDFVKGWVGEQALSVVANASDQGVRIPGEMLPHHVAVHPTPQRRVIIGWKSPMTGTVNVKGAVRRAHIGCGNGVDWRLEL 462
            LTAYRERLL HTAACLNAALEVETATAAVNLEKLAQKH IEPVILHAWLASLGLDGGQPTIEGYIT+QTEQIQNYDFVKGWVGEQALSVV NASDQGVRIPGEMLPHHVAVHPTPQRRVIIGWKSPM+GTVNVKGAVRRAHIGCGNGVDWRLEL
Sbjct:  430 LTAYRERLLAHTAACLNAALEVETATAAVNLEKLAQKHGIEPVILHAWLASLGLDGGQPTIEGYITKQTEQIQNYDFVKGWVGEQALSVVTNASDQGVRIPGEMLPHHVAVHPTPQRRVIIGWKSPMSGTVNVKGAVRRAHIGCGNGVDWRLEL 583          
BLAST of mRNA_M-pyrifera_M_contig126290.5309.1 vs. uniprot
Match: A0A813BIU2_SYMMI (YdhC protein (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A813BIU2_SYMMI)

HSP 1 Score: 302 bits (774), Expect = 2.540e-92
Identity = 147/154 (95.45%), Postives = 150/154 (97.40%), Query Frame = 1
Query:    1 LTAYRERLLDHTAACLNAALEVETATAAVNLEKLAQKHDIEPVILHAWLASLGLDGGQPTIEGYITRQTEQIQNYDFVKGWVGEQALSVVANASDQGVRIPGEMLPHHVAVHPTPQRRVIIGWKSPMTGTVNVKGAVRRAHIGCGNGVDWRLEL 462
            LTAYRERLL HTAACLNAALEVETAT AVNLEKLAQKH +EPVILHAWLA LGLDGGQPTIEGYIT+QTEQIQNYDFVKGWVGEQALSVVAN+SDQGVRIPGEMLPHHVAVHPTPQRRVIIGWKSPMTGTVNVKGAVRRAHIGCGNGVDWRLEL
Sbjct:  391 LTAYRERLLAHTAACLNAALEVETATEAVNLEKLAQKHGLEPVILHAWLACLGLDGGQPTIEGYITKQTEQIQNYDFVKGWVGEQALSVVANSSDQGVRIPGEMLPHHVAVHPTPQRRVIIGWKSPMTGTVNVKGAVRRAHIGCGNGVDWRLEL 544          
BLAST of mRNA_M-pyrifera_M_contig126290.5309.1 vs. uniprot
Match: A0A518A7P7_9PLAN (Uncharacterized protein n=3 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A518A7P7_9PLAN)

HSP 1 Score: 258 bits (658), Expect = 9.160e-77
Identity = 123/154 (79.87%), Postives = 135/154 (87.66%), Query Frame = 1
Query:    1 LTAYRERLLDHTAACLNAALEVETATAAVNLEKLAQKHDIEPVILHAWLASLGLDGGQPTIEGYITRQTEQIQNYDFVKGWVGEQALSVVANASDQGVRIPGEMLPHHVAVHPTPQRRVIIGWKSPMTGTVNVKGAVRRAHIGCGNGVDWRLEL 462
            LTAYR+RLL+ TAACLNAALEVE +   ++L+ LA KH +EP IL AW A LGLDG +PTIE YIT Q + +QNYDFVKGWVGE ALSVVAN+SDQ VRIPGEMLPHHVAVHPTPQRRVIIGWKSP+TGTVNVKGAVRRAHIGCGNGVDWRLEL
Sbjct:  429 LTAYRQRLLESTAACLNAALEVEASKEPIDLKSLAAKHKVEPAILAAWFACLGLDGRKPTIEEYITNQAQSLQNYDFVKGWVGEHALSVVANSSDQSVRIPGEMLPHHVAVHPTPQRRVIIGWKSPLTGTVNVKGAVRRAHIGCGNGVDWRLEL 582          
BLAST of mRNA_M-pyrifera_M_contig126290.5309.1 vs. uniprot
Match: A0A517RGS7_9PLAN (Planctomycete cytochrome C n=1 Tax=Gimesia alba TaxID=2527973 RepID=A0A517RGS7_9PLAN)

HSP 1 Score: 195 bits (495), Expect = 8.730e-55
Identity = 95/154 (61.69%), Postives = 119/154 (77.27%), Query Frame = 1
Query:    1 LTAYRERLLDHTAACLNAALEVETATAAVNLEKLAQKHDIEPVILHAWLASLGLDGGQPTIEGYITRQTEQIQNYDFVKGWVGEQALSVVANASDQGVRIPGEMLPHHVAVHPTPQRRVIIGWKSPMTGTVNVKGAVRRAHIGCGNGVDWRLEL 462
            L+AYR+R+L++ AA LNA++E         LE LAQK+ IE V+L AWL+ LG+   + +I+ YIT + EQ QNYDF+KGWVG+ ALSVVAN+SDQ VRIPGE+ PH VAVHPTP+ RV++GWKSP+T TV V G V+RAHIGCGNGV WRL L
Sbjct:  426 LSAYRDRILENAAASLNASVEAGEKADDRQLELLAQKNGIERVVLGAWLSYLGMHQQEVSIDSYITSKMEQAQNYDFIKGWVGKNALSVVANSSDQSVRIPGEVQPHSVAVHPTPKLRVVVGWKSPVTDTVKVTGHVKRAHIGCGNGVTWRLIL 579          
BLAST of mRNA_M-pyrifera_M_contig126290.5309.1 vs. uniprot
Match: A0A518IDR8_9PLAN (Uncharacterized protein n=2 Tax=Gimesia fumaroli TaxID=2527976 RepID=A0A518IDR8_9PLAN)

HSP 1 Score: 189 bits (481), Expect = 6.690e-53
Identity = 91/154 (59.09%), Postives = 116/154 (75.32%), Query Frame = 1
Query:    1 LTAYRERLLDHTAACLNAALEVETATAAVNLEKLAQKHDIEPVILHAWLASLGLDGGQPTIEGYITRQTEQIQNYDFVKGWVGEQALSVVANASDQGVRIPGEMLPHHVAVHPTPQRRVIIGWKSPMTGTVNVKGAVRRAHIGCGNGVDWRLEL 462
            L+A R+R+L++  A LNAA+E         LE LA+K+ I+ V+L AW + LG+   + +I+ YITR+ EQ QNYDF+KGWVG+ ALSVVAN+SDQ VRIPGE+ PH +AVHPTP+ RV+ GWKSP+T TV V G V+RAHIGCGNGV WRL L
Sbjct:  431 LSANRDRILENATASLNAAVEAGETANERQLELLARKYGIDRVVLGAWFSYLGMHQQEASIDSYITRKMEQAQNYDFIKGWVGDNALSVVANSSDQSVRIPGEVQPHSIAVHPTPELRVVAGWKSPVTDTVKVAGHVKRAHIGCGNGVTWRLIL 584          
BLAST of mRNA_M-pyrifera_M_contig126290.5309.1 vs. uniprot
Match: A0A3L7U6B8_9BACT (DUF1592 domain-containing protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3L7U6B8_9BACT)

HSP 1 Score: 185 bits (470), Expect = 2.020e-51
Identity = 86/154 (55.84%), Postives = 114/154 (74.03%), Query Frame = 1
Query:    1 LTAYRERLLDHTAACLNAALEVETATAAVNLEKLAQKHDIEPVILHAWLASLGLDGGQPTIEGYITRQTEQIQNYDFVKGWVGEQALSVVANASDQGVRIPGEMLPHHVAVHPTPQRRVIIGWKSPMTGTVNVKGAVRRAHIGCGNGVDWRLEL 462
            L+A+RE++++  AACLNAA E   A  A  L++LA  H ++  +L AW A LG+  G+  IE YIT++ E+ +N DFVKGWVG  ALSV+AN+SD  VR+PG+M PH V VHPTP+ RV +GW+SP+TG VNV G V+RAH+GCGNGV W +EL
Sbjct:  425 LSAHREQVVNSVAACLNAAAEAGAAADAATLDELAATHSVDRNVLAAWFAYLGIGAGEARIETYITQKMERSENSDFVKGWVGPDALSVIANSSDDLVRVPGDMQPHSVGVHPTPKLRVAVGWRSPITGAVNVTGRVQRAHVGCGNGVTWLVEL 578          
BLAST of mRNA_M-pyrifera_M_contig126290.5309.1 vs. uniprot
Match: A0A3L7RNQ3_9BACT (DUF1587 domain-containing protein (Fragment) n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3L7RNQ3_9BACT)

HSP 1 Score: 184 bits (466), Expect = 2.740e-51
Identity = 87/154 (56.49%), Postives = 111/154 (72.08%), Query Frame = 1
Query:    1 LTAYRERLLDHTAACLNAALEVETATAAVNLEKLAQKHDIEPVILHAWLASLGLDGGQPTIEGYITRQTEQIQNYDFVKGWVGEQALSVVANASDQGVRIPGEMLPHHVAVHPTPQRRVIIGWKSPMTGTVNVKGAVRRAHIGCGNGVDWRLEL 462
            L ++R+++L   AA LNAA EV  AT A  LE LA KH ++P +L +W + LG+  G+  I  YIT + E+ +NYDFVKGW G  ALSV+AN+SDQ VRIPG+M PH V VHP+P+ R I+GWKSP+ G V V G V+RAHIGCGNGV W +EL
Sbjct:  427 LNSHRQQILATAAASLNAAAEVGAATDAATLEALATKHAVDPAVLASWFSYLGIGAGEVQINSYITSKLERTENYDFVKGWTGPDALSVLANSSDQFVRIPGDMHPHSVGVHPSPKLRAIVGWKSPIAGHVKVSGKVQRAHIGCGNGVTWLVEL 580          
BLAST of mRNA_M-pyrifera_M_contig126290.5309.1 vs. uniprot
Match: A0A3L7NWI8_9BACT (DUF1592 domain-containing protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3L7NWI8_9BACT)

HSP 1 Score: 179 bits (454), Expect = 2.880e-49
Identity = 82/154 (53.25%), Postives = 112/154 (72.73%), Query Frame = 1
Query:    1 LTAYRERLLDHTAACLNAALEVETATAAVNLEKLAQKHDIEPVILHAWLASLGLDGGQPTIEGYITRQTEQIQNYDFVKGWVGEQALSVVANASDQGVRIPGEMLPHHVAVHPTPQRRVIIGWKSPMTGTVNVKGAVRRAHIGCGNGVDWRLEL 462
            L+A+RE++L   AACL AA EV     A  +E LA+KH ++  +L +W   LG+  G+  I+ Y+T++ E+++NYDFV+GW G  ALSV+AN+SD+ VRIPG+M PH V VHP+P  R I+GW+SP+ GTV V G V+RAHIGCGNGV W +EL
Sbjct:  429 LSAHREQVLATAAACLKAAAEVTNIADAKTIETLAEKHAVDQAVLASWFRYLGVGVGEARIDSYVTQKLERVENYDFVRGWTGPDALSVLANSSDEFVRIPGDMHPHSVGVHPSPGLRAIVGWRSPVAGTVKVTGRVQRAHIGCGNGVTWLVEL 582          
BLAST of mRNA_M-pyrifera_M_contig126290.5309.1 vs. uniprot
Match: A0A3B8PUY4_9BACT (Uncharacterized protein (Fragment) n=1 Tax=Verrucomicrobiales bacterium TaxID=2026801 RepID=A0A3B8PUY4_9BACT)

HSP 1 Score: 173 bits (439), Expect = 3.650e-48
Identity = 75/154 (48.70%), Postives = 109/154 (70.78%), Query Frame = 1
Query:    1 LTAYRERLLDHTAACLNAALEVETATAAVNLEKLAQKHDIEPVILHAWLASLGLDGGQPTIEGYITRQTEQIQNYDFVKGWVGEQALSVVANASDQGVRIPGEMLPHHVAVHPTPQRRVIIGWKSPMTGTVNVKGAVRRAHIGCGNGVDWRLEL 462
            LTA R+++L   A CL AA E+  +T  + ++ LA+KH  E  +L AWL  LG+  G+  + G++T+  E +Q+YDF+KGW G  ALSV+AN+SDQ VR+PG M PH VAVHP+P+ RV++GW+SP+  T+ ++G ++ AH  CGNG+ W LEL
Sbjct:  435 LTANRKKVLSSAATCLAAAAEINGSTNRIEVQSLAKKHGAEATVLAAWLDCLGIGAGEARVAGHLTQTMESLQSYDFIKGWTGADALSVIANSSDQHVRVPGNMKPHSVAVHPSPKLRVVVGWRSPIATTLRIEGVIQHAHPECGNGITWALEL 588          
BLAST of mRNA_M-pyrifera_M_contig126290.5309.1 vs. uniprot
Match: A0A350ES45_9BACT (Uncharacterized protein n=1 Tax=Verrucomicrobiales bacterium TaxID=2026801 RepID=A0A350ES45_9BACT)

HSP 1 Score: 167 bits (424), Expect = 3.140e-45
Identity = 82/154 (53.25%), Postives = 103/154 (66.88%), Query Frame = 1
Query:    1 LTAYRERLLDHTAACLNAALEVETATAAVNLEKLAQKHDIEPVILHAWLASLGLDGGQPTIEGYITRQTEQIQNYDFVKGWVGEQALSVVANASDQGVRIPGEMLPHHVAVHPTPQRRVIIGWKSPMTGTVNVKGAVRRAHIGCGNGVDWRLEL 462
            L  + + +L   A CL AA EV  A  A +LE LA+KHD+ PV L AWL  LGL  G+  IEG+IT + E  Q Y F+KGW G  ALSVVAN+SD  VRIPG M P  VAVHP+P RRV+IGW++P+  T+ + G V+ AH  CGNGV W +E+
Sbjct:  412 LNTHLDVILSSAARCLMAAAEVTGALDAGSLEALARKHDVPPVALSAWLQCLGLGAGETRIEGHITGRMESAQGYAFIKGWTGADALSVVANSSDSHVRIPGNMKPRSVAVHPSPSRRVVIGWRAPLATTLELAGVVQHAHPECGNGVAWAIEV 565          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig126290.5309.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2E7KM13_9PLAN1.330e-9396.75Uncharacterized protein n=6 Tax=Gimesia TaxID=1649... [more]
A0A813BIU2_SYMMI2.540e-9295.45YdhC protein (Fragment) n=1 Tax=Symbiodinium micro... [more]
A0A518A7P7_9PLAN9.160e-7779.87Uncharacterized protein n=3 Tax=Gimesia panareensi... [more]
A0A517RGS7_9PLAN8.730e-5561.69Planctomycete cytochrome C n=1 Tax=Gimesia alba Ta... [more]
A0A518IDR8_9PLAN6.690e-5359.09Uncharacterized protein n=2 Tax=Gimesia fumaroli T... [more]
A0A3L7U6B8_9BACT2.020e-5155.84DUF1592 domain-containing protein n=1 Tax=Planctom... [more]
A0A3L7RNQ3_9BACT2.740e-5156.49DUF1587 domain-containing protein (Fragment) n=1 T... [more]
A0A3L7NWI8_9BACT2.880e-4953.25DUF1592 domain-containing protein n=1 Tax=Planctom... [more]
A0A3B8PUY4_9BACT3.650e-4848.70Uncharacterized protein (Fragment) n=1 Tax=Verruco... [more]
A0A350ES45_9BACT3.140e-4553.25Uncharacterized protein n=1 Tax=Verrucomicrobiales... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig126290contigM-pyrifera_M_contig126290:4..465 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score128.6
Seed ortholog evalue2.4e-27
Seed eggNOG ortholog1123242.JH636437_gene6081
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Protein of unknown function (DUF1587)
EggNOG OGs2IX6S@203682,COG2010@1,COG2010@2
COG Functional cat.C
Best tax levelPlanctomycetes
Best eggNOG OGNA|NA|NA
Exons1
Model size462
Cds size462
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815777.7809439-CDS-M-pyrifera_M_contig126290:3..4651622815777.7809439-CDS-M-pyrifera_M_contig126290:3..465Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig126290 4..465 -
1692277564.7513247-CDS-M-pyrifera_M_contig126290:3..4651692277564.7513247-CDS-M-pyrifera_M_contig126290:3..465Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig126290 4..465 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig126290.5309.1prot_M-pyrifera_M_contig126290.5309.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig126290 4..465 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig126290.5309.1

>prot_M-pyrifera_M_contig126290.5309.1 ID=prot_M-pyrifera_M_contig126290.5309.1|Name=mRNA_M-pyrifera_M_contig126290.5309.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=154bp
LTAYRERLLDHTAACLNAALEVETATAAVNLEKLAQKHDIEPVILHAWLA
SLGLDGGQPTIEGYITRQTEQIQNYDFVKGWVGEQALSVVANASDQGVRI
PGEMLPHHVAVHPTPQRRVIIGWKSPMTGTVNVKGAVRRAHIGCGNGVDW
RLEL
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mRNA from alignment at M-pyrifera_M_contig126290:4..465-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig126290.5309.1 ID=mRNA_M-pyrifera_M_contig126290.5309.1|Name=mRNA_M-pyrifera_M_contig126290.5309.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=462bp|location=Sequence derived from alignment at M-pyrifera_M_contig126290:4..465- (Macrocystis pyrifera P11B4 male)
CTGACCGCTTACCGGGAGCGTCTGCTGGATCATACGGCTGCCTGTCTGAA TGCAGCGCTGGAAGTAGAAACGGCAACAGCAGCGGTCAATCTGGAAAAAC TGGCGCAGAAGCACGACATCGAACCCGTAATTCTGCATGCCTGGCTTGCC AGCCTGGGGCTGGATGGCGGACAGCCGACTATCGAGGGATACATTACCAG GCAGACTGAGCAAATTCAGAACTATGACTTCGTCAAAGGCTGGGTAGGCG AGCAAGCCTTGAGTGTTGTGGCGAATGCATCCGATCAGGGTGTGCGAATT CCTGGCGAAATGCTGCCACACCATGTCGCCGTACATCCCACTCCTCAGCG GCGGGTGATCATTGGCTGGAAAAGTCCCATGACCGGCACGGTCAATGTCA AAGGTGCTGTCAGGCGGGCACATATCGGTTGTGGAAATGGAGTCGACTGG CGACTGGAATTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig126290:4..465-

>mRNA_M-pyrifera_M_contig126290.5309.1 ID=mRNA_M-pyrifera_M_contig126290.5309.1|Name=mRNA_M-pyrifera_M_contig126290.5309.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=924bp|location=Sequence derived from alignment at M-pyrifera_M_contig126290:4..465- (Macrocystis pyrifera P11B4 male)
CTGACCGCTTACCGGGAGCGTCTGCTGGATCATACGGCTGCCTGTCTGAA
TGCAGCGCTGGAAGTAGAAACGGCAACAGCAGCGGTCAATCTGGAAAAAC
TGGCGCAGAAGCACGACATCGAACCCGTAATTCTGCATGCCTGGCTTGCC
AGCCTGGGGCTGGATGGCGGACAGCCGACTATCGAGGGATACATTACCAG
GCAGACTGAGCAAATTCAGAACTATGACTTCGTCAAAGGCTGGGTAGGCG
AGCAAGCCTTGAGTGTTGTGGCGAATGCATCCGATCAGGGTGTGCGAATT
CCTGGCGAAATGCTGCCACACCATGTCGCCGTACATCCCACTCCTCAGCG
GCGGGTGATCATTGGCTGGAAAAGTCCCATGACCGGCACGGTCAATGTCA
AAGGTGCTGTCAGGCGGGCACATATCGGTTGTGGAAATGGAGTCGACTGG
CGACTGGAATTGCTGACCGCTTACCGGGAGCGTCTGCTGGATCATACGGC
TGCCTGTCTGAATGCAGCGCTGGAAGTAGAAACGGCAACAGCAGCGGTCA
ATCTGGAAAAACTGGCGCAGAAGCACGACATCGAACCCGTAATTCTGCAT
GCCTGGCTTGCCAGCCTGGGGCTGGATGGCGGACAGCCGACTATCGAGGG
ATACATTACCAGGCAGACTGAGCAAATTCAGAACTATGACTTCGTCAAAG
GCTGGGTAGGCGAGCAAGCCTTGAGTGTTGTGGCGAATGCATCCGATCAG
GGTGTGCGAATTCCTGGCGAAATGCTGCCACACCATGTCGCCGTACATCC
CACTCCTCAGCGGCGGGTGATCATTGGCTGGAAAAGTCCCATGACCGGCA
CGGTCAATGTCAAAGGTGCTGTCAGGCGGGCACATATCGGTTGTGGAAAT
GGAGTCGACTGGCGACTGGAATTG
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