mRNA_M-pyrifera_M_contig126271.5301.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig126271.5301.1
Unique NamemRNA_M-pyrifera_M_contig126271.5301.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig126271.5301.1 vs. uniprot
Match: A0A1W2BH95_9MICO (Uncharacterized protein n=1 Tax=Janibacter indicus TaxID=857417 RepID=A0A1W2BH95_9MICO)

HSP 1 Score: 58.9 bits (141), Expect = 1.680e-8
Identity = 34/76 (44.74%), Postives = 54/76 (71.05%), Query Frame = 1 
Query:    4 TADEIMKELENDPDYQAMRAAKKARLEKRRKKYEAQQQPLLDDLQRQGVTITSVYDLVNSPRPLSEEVVDVLLASL 231
            TA ++M  LE DP ++A RA+ +A LE+R +++   +QPL++DL+R+GV + SV+DLVN+  P  E +  VL+A L
Sbjct:   81 TAKQLMDLLEQDPAFRAGRASGEAELEQRVRRWREAEQPLVEDLRREGVCVDSVWDLVNTSEPYPEALA-VLMAHL 155
[Close]
BLAST of mRNA_M-pyrifera_M_contig126271.5301.1 vs. uniprot
Match: A0A6N9YQB3_9ACTN (Uncharacterized protein n=1 Tax=Phytoactinopolyspora alkaliphila TaxID=1783498 RepID=A0A6N9YQB3_9ACTN)

HSP 1 Score: 55.8 bits (133), Expect = 1.300e-7
Identity = 29/64 (45.31%), Postives = 43/64 (67.19%), Query Frame = 1 
Query:    1 RTADEIMKELENDPDYQAMRAAKKARLEKRRKKYEAQQQPLLDDLQRQGVTITSVYDLVNSPRP 192
            +TA E+M EL  D DY  M+AA++  L+ R +     +QP++DDL R GV ++SV+DLVN+  P
Sbjct:   11 KTAAELMAELSQDEDYLRMKAAQEKELQARAEVLRRAEQPIVDDLARAGVEVSSVWDLVNTSEP 74
[Close]
BLAST of mRNA_M-pyrifera_M_contig126271.5301.1 vs. uniprot
Match: A0A6N9YQ86_9ACTN (Uncharacterized protein n=3 Tax=Phytoactinopolyspora alkaliphila TaxID=1783498 RepID=A0A6N9YQ86_9ACTN)

HSP 1 Score: 55.5 bits (132), Expect = 1.810e-7
Identity = 29/63 (46.03%), Postives = 43/63 (68.25%), Query Frame = 1 
Query:    4 TADEIMKELENDPDYQAMRAAKKARLEKRRKKYEAQQQPLLDDLQRQGVTITSVYDLVNSPRP 192
            TA E+M EL  D DY  M+AA++ +L+ R +     +QP++DDL R GV ++SV+DLVN+  P
Sbjct:   12 TAAELMAELSQDEDYLRMKAAQEEQLQARAEVLRRAEQPIVDDLARAGVEVSSVWDLVNTSEP 74
[Close]
BLAST of mRNA_M-pyrifera_M_contig126271.5301.1 vs. uniprot
Match: A0A7L9J506_9MICO (Uncharacterized protein n=3 Tax=Janibacter indicus TaxID=857417 RepID=A0A7L9J506_9MICO)

HSP 1 Score: 54.7 bits (130), Expect = 2.840e-7
Identity = 31/68 (45.59%), Postives = 49/68 (72.06%), Query Frame = 1 
Query:   28 LENDPDYQAMRAAKKARLEKRRKKYEAQQQPLLDDLQRQGVTITSVYDLVNSPRPLSEEVVDVLLASL 231
            LE DP ++A RA+ +A LE+R +++   +QPL++DL+R+GV + SV+DLVN+  P   E + VL+A L
Sbjct:    4 LEQDPAFRAGRASGEAELEQRVRRWREAEQPLVEDLRREGVCVDSVWDLVNTSEP-HPEALAVLMAHL 70
[Close]
BLAST of mRNA_M-pyrifera_M_contig126271.5301.1 vs. uniprot
Match: A0A437Q8P9_9GAMM (Uncharacterized protein n=1 Tax=Neptunomonas marina TaxID=1815562 RepID=A0A437Q8P9_9GAMM)

HSP 1 Score: 52.8 bits (125), Expect = 1.190e-6
Identity = 30/67 (44.78%), Postives = 45/67 (67.16%), Query Frame = 1 
Query:    4 TADEIMKELENDPDYQAMRAAKKARLEKRRKKYEAQQQPLLDDLQRQGVTITSVYDLVNS-PRPLSE 201
            TA E+M  LE+DP+Y A RA K+A +EK  ++    +  L+++L   GV++ SV+DLVN+ P PL E
Sbjct:    7 TAAELMANLEDDPEYLARRAVKEAEIEKLSEECRVDEALLIEELNHVGVSVVSVWDLVNNAPHPLLE 73
[Close]
BLAST of mRNA_M-pyrifera_M_contig126271.5301.1 vs. uniprot
Match: A0A7K3M118_9ACTN (Uncharacterized protein n=1 Tax=Phytoactinopolyspora mesophila TaxID=2650750 RepID=A0A7K3M118_9ACTN)

HSP 1 Score: 49.3 bits (116), Expect = 3.280e-5
Identity = 26/61 (42.62%), Postives = 39/61 (63.93%), Query Frame = 1 
Query:   19 MKELENDPDYQAMRAAKKARLEKRRKKYEAQQQPLLDDLQRQGVTITSVYDLVNSPRPLSE 201
            M ELE+DP++ A R  +     +R  +  A ++PL+DDLQR G+ + SV+DLVN+  P  E
Sbjct:    1 MAELESDPEWVARRDERDREFAERTARLRAAEEPLVDDLQRVGLFVESVWDLVNTSEPYPE 61
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig126271.5301.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A1W2BH95_9MICO1.680e-844.74Uncharacterized protein n=1 Tax=Janibacter indicus... [more]
A0A6N9YQB3_9ACTN1.300e-745.31Uncharacterized protein n=1 Tax=Phytoactinopolyspo... [more]
A0A6N9YQ86_9ACTN1.810e-746.03Uncharacterized protein n=3 Tax=Phytoactinopolyspo... [more]
A0A7L9J506_9MICO2.840e-745.59Uncharacterized protein n=3 Tax=Janibacter indicus... [more]
A0A437Q8P9_9GAMM1.190e-644.78Uncharacterized protein n=1 Tax=Neptunomonas marin... [more]
A0A7K3M118_9ACTN3.280e-542.62Uncharacterized protein n=1 Tax=Phytoactinopolyspo... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig126271contigM-pyrifera_M_contig126271:25..255 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size231
Cds size213
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815777.4635549-CDS-M-pyrifera_M_contig126271:24..2371622815777.4635549-CDS-M-pyrifera_M_contig126271:24..237Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig126271 25..237 -
1692277564.6409564-CDS-M-pyrifera_M_contig126271:24..2371692277564.6409564-CDS-M-pyrifera_M_contig126271:24..237Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig126271 25..237 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815777.4777021-UTR-M-pyrifera_M_contig126271:237..2551622815777.4777021-UTR-M-pyrifera_M_contig126271:237..255Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig126271 238..255 -
1692277564.6510456-UTR-M-pyrifera_M_contig126271:237..2551692277564.6510456-UTR-M-pyrifera_M_contig126271:237..255Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig126271 238..255 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig126271.5301.1prot_M-pyrifera_M_contig126271.5301.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig126271 25..237 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig126271.5301.1

>prot_M-pyrifera_M_contig126271.5301.1 ID=prot_M-pyrifera_M_contig126271.5301.1|Name=mRNA_M-pyrifera_M_contig126271.5301.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=71bp
MKELENDPDYQAMRAAKKARLEKRRKKYEAQQQPLLDDLQRQGVTITSVY
DLVNSPRPLSEEVVDVLLASL
back to top

mRNA from alignment at M-pyrifera_M_contig126271:25..255-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig126271.5301.1 ID=mRNA_M-pyrifera_M_contig126271.5301.1|Name=mRNA_M-pyrifera_M_contig126271.5301.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=231bp|location=Sequence derived from alignment at M-pyrifera_M_contig126271:25..255- (Macrocystis pyrifera P11B4 male)
CGAACAGCGGATGAAATCATGAAAGAGTTGGAGAATGATCCCGATTACCA
GGCAATGCGCGCTGCAAAGAAGGCGAGACTGGAGAAACGCCGCAAGAAGT
ATGAGGCACAGCAACAACCACTCCTTGATGACCTCCAGCGACAGGGAGTG
ACGATCACCTCTGTGTACGATCTTGTGAATTCTCCACGTCCATTGTCTGA
GGAAGTCGTGGATGTGCTGCTCGCTTCTCTT
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig126271:25..255-

>mRNA_M-pyrifera_M_contig126271.5301.1 ID=mRNA_M-pyrifera_M_contig126271.5301.1|Name=mRNA_M-pyrifera_M_contig126271.5301.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=426bp|location=Sequence derived from alignment at M-pyrifera_M_contig126271:25..255- (Macrocystis pyrifera P11B4 male)
ATGAAAGAGTTGGAGAATGATCCCGATTACCAGGCAATGCGCGCTGCAAA
GAAGGCGAGACTGGAGAAACGCCGCAAGAAGTATGAGGCACAGCAACAAC
CACTCCTTGATGACCTCCAGCGACAGGGAGTGACGATCACCTCTGTGTAC
GATCTTGTGAATTCTCCACGTCCATTGTCTGAGGAAGTCGTGGATGTGCT
GCTCGCTTCTCTTATGAAAGAGTTGGAGAATGATCCCGATTACCAGGCAA
TGCGCGCTGCAAAGAAGGCGAGACTGGAGAAACGCCGCAAGAAGTATGAG
GCACAGCAACAACCACTCCTTGATGACCTCCAGCGACAGGGAGTGACGAT
CACCTCTGTGTACGATCTTGTGAATTCTCCACGTCCATTGTCTGAGGAAG
TCGTGGATGTGCTGCTCGCTTCTCTT
back to top