mRNA_M-pyrifera_M_contig126268.5299.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig126268.5299.1
Unique NamemRNA_M-pyrifera_M_contig126268.5299.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig126268.5299.1 vs. uniprot
Match: A0A485KVA5_9STRA (Aste57867_12028 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KVA5_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 4.810e-18
Identity = 42/68 (61.76%), Postives = 49/68 (72.06%), Query Frame = 1
Query:   46 ANLTRGVLLRRYKRFLGDIELEDGTVETVHVPNTGPMIGLLDTPRARVLLETSPNPKRKYPKTLVAIE 249
            + L  G L++RYKRFL DI+L+DG V TVH PNTGPM+GLLD P A V L  S NPKRKY  TL  I+
Sbjct:   81 SKLVGGQLIKRYKRFLADIQLDDGEVVTVHCPNTGPMVGLLDIPNAPVQLSVSDNPKRKYAHTLEMIQ 148          
BLAST of mRNA_M-pyrifera_M_contig126268.5299.1 vs. uniprot
Match: A0A067CR43_SAPPC (Uncharacterized protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067CR43_SAPPC)

HSP 1 Score: 84.7 bits (208), Expect = 1.450e-17
Identity = 45/73 (61.64%), Postives = 52/73 (71.23%), Query Frame = 1
Query:   52 LTRGVLLRRYKRFLGDIELEDGTVETVHVPNTGPMIGLLDTPRARVLLETSPNPKRKYPKTLVAIECVEDGKG 270
            L +G LL+RYKRFL DI+L +  V TVH PNTGPMIGLLD P A V L  S NPKRKY  TL  I+ V +G+G
Sbjct:   91 LVQGKLLKRYKRFLADIQLANDEVVTVHCPNTGPMIGLLDLPLANVQLSVSDNPKRKYAHTLEQIQ-VHNGRG 162          
BLAST of mRNA_M-pyrifera_M_contig126268.5299.1 vs. uniprot
Match: T0QED4_SAPDV (Uncharacterized protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0QED4_SAPDV)

HSP 1 Score: 84.3 bits (207), Expect = 2.020e-17
Identity = 44/73 (60.27%), Postives = 53/73 (72.60%), Query Frame = 1
Query:   52 LTRGVLLRRYKRFLGDIELEDGTVETVHVPNTGPMIGLLDTPRARVLLETSPNPKRKYPKTLVAIECVEDGKG 270
            L +G LL+RYKRFL DI+L +  V TVH PNTGPM+GLLD P A V L  S NPKRKY  TL  I+ V++G+G
Sbjct:   91 LVQGKLLKRYKRFLADIQLANDEVVTVHCPNTGPMVGLLDMPLANVQLSLSDNPKRKYAHTLEQIQ-VDNGQG 162          
BLAST of mRNA_M-pyrifera_M_contig126268.5299.1 vs. uniprot
Match: A0A1V9YTC4_9STRA (Sugar fermentation stimulation protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YTC4_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 3.090e-17
Identity = 47/80 (58.75%), Postives = 55/80 (68.75%), Query Frame = 1
Query:   31 GRIAKA--NLTRGVLLRRYKRFLGDIELEDGTVETVHVPNTGPMIGLLDTPRARVLLETSPNPKRKYPKTLVAIECVEDG 264
            GR+  A   L +G LL+RYKRFL D++L +  V TVH PNTGPMIGLLD P A V L  S NPKRKY  TL  I+ VE+G
Sbjct:   55 GRVVAAYPRLVQGQLLKRYKRFLADVQLANDEVVTVHCPNTGPMIGLLDLPLAPVQLSISDNPKRKYAHTLEHIQ-VENG 133          
BLAST of mRNA_M-pyrifera_M_contig126268.5299.1 vs. uniprot
Match: A0A1I6SIZ4_9CAUL (Sugar fermentation stimulation protein homolog n=2 Tax=Caulobacterales TaxID=204458 RepID=A0A1I6SIZ4_9CAUL)

HSP 1 Score: 79.3 bits (194), Expect = 4.520e-16
Identity = 41/74 (55.41%), Postives = 50/74 (67.57%), Query Frame = 1
Query:   43 KANLTRGVLLRRYKRFLGDIELEDGTVETVHVPNTGPMIGLLDTPRARVLLETSPNPKRKYPKTLVAIECVEDG 264
            K+ L RG L+RRYKRFL D+ L+DG+  TVHVPN G M+GL   P   V L  SP+PKRK P TL A+E  + G
Sbjct:    4 KSPLERGTLIRRYKRFLADVTLDDGSTATVHVPNPGAMLGLT-APGLPVWLSRSPDPKRKLPLTLEAVELPDAG 76          
BLAST of mRNA_M-pyrifera_M_contig126268.5299.1 vs. uniprot
Match: A0A0Q7DY52_9CAUL (Sugar fermentation stimulation protein homolog n=1 Tax=Brevundimonas sp. Root1279 TaxID=1736443 RepID=A0A0Q7DY52_9CAUL)

HSP 1 Score: 78.2 bits (191), Expect = 1.240e-15
Identity = 42/76 (55.26%), Postives = 49/76 (64.47%), Query Frame = 1
Query:   37 IAKANLTRGVLLRRYKRFLGDIELEDGTVETVHVPNTGPMIGLLDTPRARVLLETSPNPKRKYPKTLVAIECVEDG 264
            I K  L RG L+RRYKRFL D+ L+DGT  TVHVPN G M+GL   P   V L  SP+PKRK P TL  +E  + G
Sbjct:    2 IFKTPLERGTLVRRYKRFLADVILDDGTATTVHVPNPGAMLGLT-APGLPVWLSRSPDPKRKLPLTLEMVELPDAG 76          
BLAST of mRNA_M-pyrifera_M_contig126268.5299.1 vs. uniprot
Match: A0A6G0XYQ4_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XYQ4_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 1.410e-15
Identity = 40/65 (61.54%), Postives = 46/65 (70.77%), Query Frame = 1
Query:   52 LTRGVLLRRYKRFLGDIELEDGTVETVHVPNTGPMIGLLDTPRARVLLETSPNPKRKYPKTLVAI 246
            L  G L++RYKRFL D++L+DGTV TVH PNTGPM+GLLD P A V L  S N  RKY  TL  I
Sbjct:   78 LVSGQLVQRYKRFLADVKLDDGTVVTVHCPNTGPMVGLLDQPMAPVQLSVSSNLTRKYKYTLEMI 142          
BLAST of mRNA_M-pyrifera_M_contig126268.5299.1 vs. uniprot
Match: A0A024UV25_9STRA (Sugar fermentation stimulation protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UV25_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 1.580e-15
Identity = 42/71 (59.15%), Postives = 49/71 (69.01%), Query Frame = 1
Query:   52 LTRGVLLRRYKRFLGDIELEDG-TVETVHVPNTGPMIGLLDTPRARVLLETSPNPKRKYPKTLVAIECVED 261
            L  G L++RYKRFL D++L++  TV TVH PNTGPMIGLLD P A V L  S N KRKY  TL  I+ V D
Sbjct:   97 LVSGKLIKRYKRFLADVQLDNSDTVVTVHCPNTGPMIGLLDLPLAPVRLSVSDNAKRKYAHTLEYIQVVND 167          
BLAST of mRNA_M-pyrifera_M_contig126268.5299.1 vs. uniprot
Match: A0A519KKH6_9CAUL (DNA/RNA nuclease SfsA (Fragment) n=1 Tax=Brevundimonas sp. TaxID=1871086 RepID=A0A519KKH6_9CAUL)

HSP 1 Score: 72.0 bits (175), Expect = 9.360e-15
Identity = 36/69 (52.17%), Postives = 46/69 (66.67%), Query Frame = 1
Query:   43 KANLTRGVLLRRYKRFLGDIELEDGTVETVHVPNTGPMIGLLDTPRARVLLETSPNPKRKYPKTLVAIE 249
            K+ L  G L+RRYKRFL D+ L DG+  T+HVPN G M+GL + P   V +  SP+PKRK P TL  I+
Sbjct:    4 KSGLEHGTLIRRYKRFLADVSLADGSETTIHVPNPGAMLGLTE-PGLPVWMSRSPDPKRKLPLTLEMID 71          
BLAST of mRNA_M-pyrifera_M_contig126268.5299.1 vs. uniprot
Match: A0A1W0ABH8_9STRA (Sugar fermentation stimulation protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0ABH8_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 1.030e-14
Identity = 39/66 (59.09%), Postives = 45/66 (68.18%), Query Frame = 1
Query:   52 LTRGVLLRRYKRFLGDIELEDGTVETVHVPNTGPMIGLLDTPRARVLLETSPNPKRKYPKTLVAIE 249
            L +G LL+RYKRFL DI+L +  + TVH PNTGPMI LLD P A V L  S N KRKY  TL  I+
Sbjct:   52 LVQGQLLKRYKRFLADIQLGNDEIVTVHCPNTGPMISLLDVPNAGVQLSVSDNAKRKYAHTLEQIQ 117          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig126268.5299.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A485KVA5_9STRA4.810e-1861.76Aste57867_12028 protein n=1 Tax=Aphanomyces stella... [more]
A0A067CR43_SAPPC1.450e-1761.64Uncharacterized protein n=1 Tax=Saprolegnia parasi... [more]
T0QED4_SAPDV2.020e-1760.27Uncharacterized protein n=1 Tax=Saprolegnia diclin... [more]
A0A1V9YTC4_9STRA3.090e-1758.75Sugar fermentation stimulation protein n=1 Tax=Ach... [more]
A0A1I6SIZ4_9CAUL4.520e-1655.41Sugar fermentation stimulation protein homolog n=2... [more]
A0A0Q7DY52_9CAUL1.240e-1555.26Sugar fermentation stimulation protein homolog n=1... [more]
A0A6G0XYQ4_9STRA1.410e-1561.54Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A024UV25_9STRA1.580e-1559.15Sugar fermentation stimulation protein n=1 Tax=Aph... [more]
A0A519KKH6_9CAUL9.360e-1552.17DNA/RNA nuclease SfsA (Fragment) n=1 Tax=Brevundim... [more]
A0A1W0ABH8_9STRA1.030e-1459.09Sugar fermentation stimulation protein n=1 Tax=Thr... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig126268contigM-pyrifera_M_contig126268:6..275 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score86.3
Seed ortholog evalue8.1e-15
Seed eggNOG ortholog112098.XP_008613224.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Sugar fermentation stimulation protein
EggNOG OGs2S0XH@2759,COG1489@1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size270
Cds size270
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815777.3915274-CDS-M-pyrifera_M_contig126268:5..2751622815777.3915274-CDS-M-pyrifera_M_contig126268:5..275Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig126268 6..275 -
1692277564.6162386-CDS-M-pyrifera_M_contig126268:5..2751692277564.6162386-CDS-M-pyrifera_M_contig126268:5..275Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig126268 6..275 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig126268.5299.1prot_M-pyrifera_M_contig126268.5299.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig126268 6..275 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig126268.5299.1

>prot_M-pyrifera_M_contig126268.5299.1 ID=prot_M-pyrifera_M_contig126268.5299.1|Name=mRNA_M-pyrifera_M_contig126268.5299.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=90bp
MAAGEAGIVVGRIAKANLTRGVLLRRYKRFLGDIELEDGTVETVHVPNTG
PMIGLLDTPRARVLLETSPNPKRKYPKTLVAIECVEDGKG
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mRNA from alignment at M-pyrifera_M_contig126268:6..275-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig126268.5299.1 ID=mRNA_M-pyrifera_M_contig126268.5299.1|Name=mRNA_M-pyrifera_M_contig126268.5299.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=270bp|location=Sequence derived from alignment at M-pyrifera_M_contig126268:6..275- (Macrocystis pyrifera P11B4 male)
ATGGCAGCTGGTGAAGCAGGAATTGTTGTTGGAAGGATTGCAAAGGCAAA TCTCACGCGTGGAGTGCTATTACGGAGGTATAAGAGGTTTCTTGGTGATA TTGAGTTAGAGGATGGTACAGTGGAAACGGTTCATGTCCCCAACACGGGA CCGATGATTGGTTTATTGGACACTCCAAGAGCTCGTGTCCTGTTGGAGAC ATCACCGAACCCAAAGCGCAAGTATCCAAAAACATTAGTTGCTATTGAGT GTGTAGAAGATGGGAAAGGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig126268:6..275-

>mRNA_M-pyrifera_M_contig126268.5299.1 ID=mRNA_M-pyrifera_M_contig126268.5299.1|Name=mRNA_M-pyrifera_M_contig126268.5299.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=540bp|location=Sequence derived from alignment at M-pyrifera_M_contig126268:6..275- (Macrocystis pyrifera P11B4 male)
ATGGCAGCTGGTGAAGCAGGAATTGTTGTTGGAAGGATTGCAAAGGCAAA
TCTCACGCGTGGAGTGCTATTACGGAGGTATAAGAGGTTTCTTGGTGATA
TTGAGTTAGAGGATGGTACAGTGGAAACGGTTCATGTCCCCAACACGGGA
CCGATGATTGGTTTATTGGACACTCCAAGAGCTCGTGTCCTGTTGGAGAC
ATCACCGAACCCAAAGCGCAAGTATCCAAAAACATTAGTTGCTATTGAGT
GTGTAGAAGATGGGAAAGGAATGGCAGCTGGTGAAGCAGGAATTGTTGTT
GGAAGGATTGCAAAGGCAAATCTCACGCGTGGAGTGCTATTACGGAGGTA
TAAGAGGTTTCTTGGTGATATTGAGTTAGAGGATGGTACAGTGGAAACGG
TTCATGTCCCCAACACGGGACCGATGATTGGTTTATTGGACACTCCAAGA
GCTCGTGTCCTGTTGGAGACATCACCGAACCCAAAGCGCAAGTATCCAAA
AACATTAGTTGCTATTGAGTGTGTAGAAGATGGGAAAGGA
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