mRNA_M-pyrifera_M_contig126212.5287.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig126212.5287.1
Unique NamemRNA_M-pyrifera_M_contig126212.5287.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig126212.5287.1 vs. uniprot
Match: A0A354B9X2_9ACTN (DUF58 domain-containing protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A354B9X2_9ACTN)

HSP 1 Score: 182 bits (461), Expect = 1.170e-54
Identity = 98/155 (63.23%), Postives = 114/155 (73.55%), Query Frame = 1 
Query:    4 VAIDTRPPGDHADTLDITTSVAASIASSVLAAGDATMVETTDGRSTPMVHGNAQLDQVLEFLALLDGGSPTIHPAVPTEAGTVVVVSADPTLATDHEARMVFAQRLRARVVVTCATDGWGDADAGS-STGDWIHLTGPGQLADLWTLDQRVAAVG 465
            V IDTRPPGD A  LD TTS+A S+A+SVLAAGDA  +ETTDGRSTP+V GN QL+ +LEFLALLD G+  I PA+P+ AGTVV VSADP LA+D  AR  FA RLRA +V+T   D WG A  G  STG WIHLTGPGQLA  W L +  + +G
Sbjct:  108 VVIDTRPPGDAARALDRTTSIAGSVAASVLAAGDAMRIETTDGRSTPLVSGNPQLESLLEFLALLDDGAEQISPAIPSGAGTVVAVSADPILASDVAARRRFAVRLRAAIVITIDADSWGTATTGPISTGGWIHLTGPGQLAGHWRLGRSASTLG 262
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BLAST of mRNA_M-pyrifera_M_contig126212.5287.1 vs. uniprot
Match: A0A7X6APS2_9ACTN (DUF58 domain-containing protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7X6APS2_9ACTN)

HSP 1 Score: 174 bits (442), Expect = 9.770e-53
Identity = 95/157 (60.51%), Postives = 111/157 (70.70%), Query Frame = 1 
Query:    4 VAIDTRPPGDHADTLDITTSVAASIASSVLAAGDATMVETTDGRSTPMVHGNAQLDQVLEFLALLDGGSPTIHPAVPTEAGTVVVVSADPTLATDHEARMVFAQRLRARVVVTCATDGWGDADAGSS-----TGDWIHLTGPGQLADLWTLDQRVAA 459
            V IDTRPPGD    LD+TTS+A SIA++VLAAGDA  +ETTDGRSTP++ G + LD +LEFLALLDGGS  I+P VP  +GTVV VSADP +ATD  AR    +RLRARVVVT     W  A + S+     TGDWIHLTG GQLA  W LD  + A
Sbjct:   33 VIIDTRPPGDQTSMLDVTTSIAGSIAAAVLAAGDAIRIETTDGRSTPLMLGRSHLDDMLEFLALLDGGSSRINPEVPVGSGTVVAVSADPRVATDIAARQTLGRRLRARVVVTVDAANWAPAGSTSTAGSHRTGDWIHLTGAGQLASHWRLDSLIKA 189
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BLAST of mRNA_M-pyrifera_M_contig126212.5287.1 vs. uniprot
Match: A0A2E8LCM8_9ACTN (DUF58 domain-containing protein n=5 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E8LCM8_9ACTN)

HSP 1 Score: 177 bits (450), Expect = 4.000e-51
Identity = 95/155 (61.29%), Postives = 114/155 (73.55%), Query Frame = 1 
Query:    4 VAIDTRPPGDHADTLDITTSVAASIASSVLAAGDATMVETTDGRSTPMVHGNAQLDQVLEFLALLDGGSPTIHPAVPTEAGTVVVVSADPTLATDHEARMVFAQRLRARVVVTCATDGWGDADAGS-STGDWIHLTGPGQLADLWTLDQRVAAVG 465
            V IDTRPPGD A  LD TTS+A S+A+SVLAAGDAT +ETTDGRSTP+V GN QL+ +LEFLALL  G+  I+PA+P  AGTVV +SADP LA+D   R  FA RLRA +V+T   D WG   +G  STG+WIHLTGPGQLA  W L +  + +G
Sbjct:  279 VVIDTRPPGDTARALDRTTSIAGSVAASVLAAGDATRIETTDGRSTPLVSGNPQLESLLEFLALLHDGAEQINPAIPGGAGTVVAISADPILASDAAVRRRFAVRLRAAIVITLDADSWGTMVSGPVSTGEWIHLTGPGQLAAHWRLGRLASTLG 433
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BLAST of mRNA_M-pyrifera_M_contig126212.5287.1 vs. uniprot
Match: A0A6B1AWI4_9ACTN (DUF58 domain-containing protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A6B1AWI4_9ACTN)

HSP 1 Score: 168 bits (425), Expect = 8.810e-48
Identity = 92/149 (61.74%), Postives = 107/149 (71.81%), Query Frame = 1 
Query:    4 VAIDTRPPGDHADTLDITTSVAASIASSVLAAGDATMVETTDGRSTPMVHGNAQLDQVLEFLALLDGGSPTIHPAVPTEAGTVVVVSADPTLATDHEARMVFAQRLRARVVVTCATDGWGDADAGSSTGDWIHLTGPGQLADLWTLDQR 450
            V IDTRPPGD A  LDITTSVA SIA+SVLAAGDAT++ETTDGRST  V G++QLD +LEFLALL  GSP IH A+P+ +GTV+ VSADP L TD  AR  FA+RL A++V+T   D WG    G  +  WIHLT P QL  L   D R
Sbjct:  242 VVIDTRPPGDLAAALDITTSVAGSIAASVLAAGDATLIETTDGRSTRRVIGSSQLDSLLEFLALLANGSPQIHAAIPSNSGTVIAVSADPVLVTDLTARRNFAERLGAQLVITTDVDAWGRDSHGHRSPGWIHLTAPNQLGALLPSDAR 390
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig126212.5287.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A354B9X2_9ACTN1.170e-5463.23DUF58 domain-containing protein n=1 Tax=Acidimicro... [more]
A0A7X6APS2_9ACTN9.770e-5360.51DUF58 domain-containing protein n=1 Tax=Actinomyce... [more]
A0A2E8LCM8_9ACTN4.000e-5161.29DUF58 domain-containing protein n=5 Tax=Acidimicro... [more]
A0A6B1AWI4_9ACTN8.810e-4861.74DUF58 domain-containing protein n=1 Tax=Acidimicro... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig126212contigM-pyrifera_M_contig126212:2..475 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size474
Cds size474
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815776.9459252-CDS-M-pyrifera_M_contig126212:1..4751622815776.9459252-CDS-M-pyrifera_M_contig126212:1..475Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig126212 2..475 +
1692277564.4476202-CDS-M-pyrifera_M_contig126212:1..4751692277564.4476202-CDS-M-pyrifera_M_contig126212:1..475Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig126212 2..475 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig126212.5287.1prot_M-pyrifera_M_contig126212.5287.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig126212 2..475 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig126212.5287.1

>prot_M-pyrifera_M_contig126212.5287.1 ID=prot_M-pyrifera_M_contig126212.5287.1|Name=mRNA_M-pyrifera_M_contig126212.5287.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=158bp
TVAIDTRPPGDHADTLDITTSVAASIASSVLAAGDATMVETTDGRSTPMV
HGNAQLDQVLEFLALLDGGSPTIHPAVPTEAGTVVVVSADPTLATDHEAR
MVFAQRLRARVVVTCATDGWGDADAGSSTGDWIHLTGPGQLADLWTLDQR
VAAVGGR*
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mRNA from alignment at M-pyrifera_M_contig126212:2..475+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig126212.5287.1 ID=mRNA_M-pyrifera_M_contig126212.5287.1|Name=mRNA_M-pyrifera_M_contig126212.5287.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=474bp|location=Sequence derived from alignment at M-pyrifera_M_contig126212:2..475+ (Macrocystis pyrifera P11B4 male)
ACCGTCGCCATCGACACCCGCCCGCCCGGCGACCACGCCGACACGCTCGA
CATCACCACCTCGGTCGCCGCCTCGATCGCCTCGTCGGTCCTCGCGGCGG
GCGATGCGACCATGGTCGAGACCACCGACGGCCGCTCCACGCCCATGGTC
CACGGCAACGCCCAGCTCGACCAGGTCCTCGAGTTCCTCGCCCTGCTCGA
CGGGGGCAGCCCCACCATCCACCCGGCGGTGCCGACCGAAGCCGGCACGG
TGGTGGTCGTCAGCGCCGACCCTACGCTCGCCACCGACCACGAGGCCCGT
ATGGTCTTCGCACAGCGCCTGCGCGCCCGAGTCGTCGTCACCTGCGCCAC
CGACGGCTGGGGCGACGCCGACGCCGGGAGCTCCACCGGCGACTGGATCC
ATCTCACCGGACCCGGACAACTCGCCGACCTCTGGACGCTCGACCAGCGT
GTCGCGGCGGTGGGCGGCCGATGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig126212:2..475+

>mRNA_M-pyrifera_M_contig126212.5287.1 ID=mRNA_M-pyrifera_M_contig126212.5287.1|Name=mRNA_M-pyrifera_M_contig126212.5287.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=948bp|location=Sequence derived from alignment at M-pyrifera_M_contig126212:2..475+ (Macrocystis pyrifera P11B4 male)
ACCGTCGCCATCGACACCCGCCCGCCCGGCGACCACGCCGACACGCTCGA
CATCACCACCTCGGTCGCCGCCTCGATCGCCTCGTCGGTCCTCGCGGCGG
GCGATGCGACCATGGTCGAGACCACCGACGGCCGCTCCACGCCCATGGTC
CACGGCAACGCCCAGCTCGACCAGGTCCTCGAGTTCCTCGCCCTGCTCGA
CGGGGGCAGCCCCACCATCCACCCGGCGGTGCCGACCGAAGCCGGCACGG
TGGTGGTCGTCAGCGCCGACCCTACGCTCGCCACCGACCACGAGGCCCGT
ATGGTCTTCGCACAGCGCCTGCGCGCCCGAGTCGTCGTCACCTGCGCCAC
CGACGGCTGGGGCGACGCCGACGCCGGGAGCTCCACCGGCGACTGGATCC
ATCTCACCGGACCCGGACAACTCGCCGACCTCTGGACGCTCGACCAGCGT
GTCGCGGCGGTGGGCGGCCGATGAACCGTCGCCATCGACACCCGCCCGCC
CGGCGACCACGCCGACACGCTCGACATCACCACCTCGGTCGCCGCCTCGA
TCGCCTCGTCGGTCCTCGCGGCGGGCGATGCGACCATGGTCGAGACCACC
GACGGCCGCTCCACGCCCATGGTCCACGGCAACGCCCAGCTCGACCAGGT
CCTCGAGTTCCTCGCCCTGCTCGACGGGGGCAGCCCCACCATCCACCCGG
CGGTGCCGACCGAAGCCGGCACGGTGGTGGTCGTCAGCGCCGACCCTACG
CTCGCCACCGACCACGAGGCCCGTATGGTCTTCGCACAGCGCCTGCGCGC
CCGAGTCGTCGTCACCTGCGCCACCGACGGCTGGGGCGACGCCGACGCCG
GGAGCTCCACCGGCGACTGGATCCATCTCACCGGACCCGGACAACTCGCC
GACCTCTGGACGCTCGACCAGCGTGTCGCGGCGGTGGGCGGCCGATGA
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