mRNA_M-pyrifera_M_contig126018.5252.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig126018.5252.1
Unique NamemRNA_M-pyrifera_M_contig126018.5252.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig126018.5252.1 vs. uniprot
Match: A0A7V3DHB1_9BACT (Uncharacterized protein n=1 Tax=Candidatus Hydrogenedentes bacterium TaxID=2030809 RepID=A0A7V3DHB1_9BACT)

HSP 1 Score: 80.5 bits (197), Expect = 3.530e-17
Identity = 34/67 (50.75%), Postives = 46/67 (68.66%), Query Frame = 1 
Query:    1 MNIKISKNAHLCAACEVEFLHEQVVTSAVRVFEGALNREDYCAECWSNQPNKKAYSVWKMVYHDPKV 201
            M IKI K +  C AC   F+HE+ +TSAVRV  G+L REDYC  CW+ + + KA+S+W   ++DPKV
Sbjct:   18 MEIKIGKCSQACTACGRAFVHEETLTSAVRVENGSLLREDYCQSCWNGERSVKAFSIWSPRFYDPKV 84
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig126018.5252.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7V3DHB1_9BACT3.530e-1750.75Uncharacterized protein n=1 Tax=Candidatus Hydroge... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig126018contigM-pyrifera_M_contig126018:295..504 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size210
Cds size210
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815775.3818882-CDS-M-pyrifera_M_contig126018:294..5041622815775.3818882-CDS-M-pyrifera_M_contig126018:294..504Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig126018 295..504 +
1692277563.7373724-CDS-M-pyrifera_M_contig126018:294..5041692277563.7373724-CDS-M-pyrifera_M_contig126018:294..504Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig126018 295..504 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig126018.5252.1prot_M-pyrifera_M_contig126018.5252.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig126018 295..504 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig126018.5252.1

>prot_M-pyrifera_M_contig126018.5252.1 ID=prot_M-pyrifera_M_contig126018.5252.1|Name=mRNA_M-pyrifera_M_contig126018.5252.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=70bp
MNIKISKNAHLCAACEVEFLHEQVVTSAVRVFEGALNREDYCAECWSNQP
NKKAYSVWKMVYHDPKVEED
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mRNA from alignment at M-pyrifera_M_contig126018:295..504+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig126018.5252.1 ID=mRNA_M-pyrifera_M_contig126018.5252.1|Name=mRNA_M-pyrifera_M_contig126018.5252.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=210bp|location=Sequence derived from alignment at M-pyrifera_M_contig126018:295..504+ (Macrocystis pyrifera P11B4 male)
ATGAATATAAAAATAAGCAAAAATGCCCACCTCTGCGCGGCATGTGAAGT
CGAATTCCTCCATGAACAGGTCGTTACCTCCGCCGTACGCGTCTTCGAAG
GGGCCCTGAATCGCGAAGACTATTGTGCCGAATGTTGGAGCAACCAACCC
AACAAGAAGGCCTATTCAGTCTGGAAAATGGTGTATCACGATCCGAAAGT
CGAGGAAGAT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig126018:295..504+

>mRNA_M-pyrifera_M_contig126018.5252.1 ID=mRNA_M-pyrifera_M_contig126018.5252.1|Name=mRNA_M-pyrifera_M_contig126018.5252.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=420bp|location=Sequence derived from alignment at M-pyrifera_M_contig126018:295..504+ (Macrocystis pyrifera P11B4 male)
ATGAATATAAAAATAAGCAAAAATGCCCACCTCTGCGCGGCATGTGAAGT
CGAATTCCTCCATGAACAGGTCGTTACCTCCGCCGTACGCGTCTTCGAAG
GGGCCCTGAATCGCGAAGACTATTGTGCCGAATGTTGGAGCAACCAACCC
AACAAGAAGGCCTATTCAGTCTGGAAAATGGTGTATCACGATCCGAAAGT
CGAGGAAGATATGAATATAAAAATAAGCAAAAATGCCCACCTCTGCGCGG
CATGTGAAGTCGAATTCCTCCATGAACAGGTCGTTACCTCCGCCGTACGC
GTCTTCGAAGGGGCCCTGAATCGCGAAGACTATTGTGCCGAATGTTGGAG
CAACCAACCCAACAAGAAGGCCTATTCAGTCTGGAAAATGGTGTATCACG
ATCCGAAAGTCGAGGAAGAT
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