mRNA_M-pyrifera_M_contig125802.5224.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig125802.5224.1
Unique NamemRNA_M-pyrifera_M_contig125802.5224.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig125802.5224.1 vs. uniprot
Match: A0A830H7H7_9CHLO (Derlin n=2 Tax=Pycnococcus provasolii TaxID=41880 RepID=A0A830H7H7_9CHLO)

HSP 1 Score: 70.5 bits (171), Expect = 4.240e-13
Identity = 36/71 (50.70%), Postives = 46/71 (64.79%), Query Frame = 1 
Query:    1 FHTFGIYIPWIFVAFSFLLSGGKPPVLDLLGIAAGHIYYLLQDVIPNMENSLS--GGKGLLPTPSFIYDLF 207
            FH    ++PW+ +AFSFLL  G  PV+DLLG+ AGH+YY L+DV P M   +S   G+ LL TP  I  LF
Sbjct:  146 FHFNAPWLPWVLLAFSFLL--GSSPVVDLLGMVAGHVYYFLEDVYPTMTRRISPPNGRRLLKTPGAIRALF 214
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BLAST of mRNA_M-pyrifera_M_contig125802.5224.1 vs. uniprot
Match: A0A8B9CZZ5_ANSCY (Derlin n=1 Tax=Anser cygnoid TaxID=8845 RepID=A0A8B9CZZ5_ANSCY)

HSP 1 Score: 66.2 bits (160), Expect = 2.240e-12
Identity = 33/64 (51.56%), Postives = 43/64 (67.19%), Query Frame = 1 
Query:   19 YIPWIFVAFSFLLSGGKPPVLDLLGIAAGHIYYLLQDVIPNMENSLSGGKGLLPTPSFIYDLFN 210
            ++PW+ + FS LL  G   ++DLLGIA GHIYY L+DV PN      GGK LL TPSF+  +F+
Sbjct:   27 FLPWVLMGFSLLL--GNSIIIDLLGIAVGHIYYFLEDVFPNQP----GGKKLLLTPSFLKMVFD 84
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BLAST of mRNA_M-pyrifera_M_contig125802.5224.1 vs. uniprot
Match: A0A852DGA9_PASAF (Derlin (Fragment) n=1 Tax=Passerina amoena TaxID=142471 RepID=A0A852DGA9_PASAF)

HSP 1 Score: 66.2 bits (160), Expect = 3.160e-12
Identity = 33/64 (51.56%), Postives = 43/64 (67.19%), Query Frame = 1 
Query:   19 YIPWIFVAFSFLLSGGKPPVLDLLGIAAGHIYYLLQDVIPNMENSLSGGKGLLPTPSFIYDLFN 210
            ++PW+ + FS LL  G   ++DLLGIA GHIYY L+DV PN      GGK LL TPSF+  +F+
Sbjct:   44 FLPWVLMGFSLLL--GNSIIIDLLGIAVGHIYYFLEDVFPNQP----GGKKLLLTPSFLKMVFD 101
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BLAST of mRNA_M-pyrifera_M_contig125802.5224.1 vs. uniprot
Match: UPI001CC55383 (derlin-3 isoform X4 n=1 Tax=Dromiciops gliroides TaxID=33562 RepID=UPI001CC55383)

HSP 1 Score: 66.6 bits (161), Expect = 6.750e-12
Identity = 34/64 (53.12%), Postives = 44/64 (68.75%), Query Frame = 1 
Query:   19 YIPWIFVAFSFLLSGGKPPVLDLLGIAAGHIYYLLQDVIPNMENSLSGGKGLLPTPSFIYDLFN 210
            ++PW+ +AFS LL  G   ++DLLGIA GHIYY L+DV PN      GGK LL TPSF+  +F+
Sbjct:  111 FLPWVLMAFSLLL--GNSILVDLLGIAVGHIYYFLEDVFPNQP----GGKKLLLTPSFLKLIFD 168
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BLAST of mRNA_M-pyrifera_M_contig125802.5224.1 vs. uniprot
Match: A0A4X2LSJ2_VOMUR (Derlin n=3 Tax=Vombatus ursinus TaxID=29139 RepID=A0A4X2LSJ2_VOMUR)

HSP 1 Score: 67.0 bits (162), Expect = 7.520e-12
Identity = 34/64 (53.12%), Postives = 44/64 (68.75%), Query Frame = 1 
Query:   19 YIPWIFVAFSFLLSGGKPPVLDLLGIAAGHIYYLLQDVIPNMENSLSGGKGLLPTPSFIYDLFN 210
            ++PW+ +AFS LL  G   ++DLLGIA GHIYY L+DV PN      GGK LL TPSF+  +F+
Sbjct:  136 FLPWVLMAFSLLL--GNSVLVDLLGIAVGHIYYFLEDVFPNQP----GGKKLLLTPSFLKLIFD 193
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BLAST of mRNA_M-pyrifera_M_contig125802.5224.1 vs. uniprot
Match: A0A7K7DZU9_9SYLV (Derlin (Fragment) n=9 Tax=Neognathae TaxID=8825 RepID=A0A7K7DZU9_9SYLV)

HSP 1 Score: 66.2 bits (160), Expect = 1.050e-11
Identity = 33/64 (51.56%), Postives = 43/64 (67.19%), Query Frame = 1 
Query:   19 YIPWIFVAFSFLLSGGKPPVLDLLGIAAGHIYYLLQDVIPNMENSLSGGKGLLPTPSFIYDLFN 210
            ++PW+ + FS LL  G   ++DLLGIA GHIYY L+DV PN      GGK LL TPSF+  +F+
Sbjct:  106 FLPWVLMGFSLLL--GNSIIIDLLGIAVGHIYYFLEDVFPNQP----GGKKLLLTPSFLKMVFD 163
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BLAST of mRNA_M-pyrifera_M_contig125802.5224.1 vs. uniprot
Match: UPI001CC59032 (derlin-3 isoform X1 n=2 Tax=Dromiciops gliroides TaxID=33562 RepID=UPI001CC59032)

HSP 1 Score: 66.6 bits (161), Expect = 1.250e-11
Identity = 34/64 (53.12%), Postives = 44/64 (68.75%), Query Frame = 1 
Query:   19 YIPWIFVAFSFLLSGGKPPVLDLLGIAAGHIYYLLQDVIPNMENSLSGGKGLLPTPSFIYDLFN 210
            ++PW+ +AFS LL  G   ++DLLGIA GHIYY L+DV PN      GGK LL TPSF+  +F+
Sbjct:  153 FLPWVLMAFSLLL--GNSILVDLLGIAVGHIYYFLEDVFPNQP----GGKKLLLTPSFLKLIFD 210
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BLAST of mRNA_M-pyrifera_M_contig125802.5224.1 vs. uniprot
Match: A0A091EIZ0_CORBR (Derlin (Fragment) n=21 Tax=Passeriformes TaxID=9126 RepID=A0A091EIZ0_CORBR)

HSP 1 Score: 66.2 bits (160), Expect = 1.340e-11
Identity = 33/64 (51.56%), Postives = 43/64 (67.19%), Query Frame = 1 
Query:   19 YIPWIFVAFSFLLSGGKPPVLDLLGIAAGHIYYLLQDVIPNMENSLSGGKGLLPTPSFIYDLFN 210
            ++PW+ + FS LL  G   ++DLLGIA GHIYY L+DV PN      GGK LL TPSF+  +F+
Sbjct:  122 FLPWVLMGFSLLL--GNSIIIDLLGIAVGHIYYFLEDVFPNQP----GGKKLLLTPSFLKMVFD 179
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BLAST of mRNA_M-pyrifera_M_contig125802.5224.1 vs. uniprot
Match: A0A2I0LZ67_COLLI (Derlin n=42 Tax=Aves TaxID=8782 RepID=A0A2I0LZ67_COLLI)

HSP 1 Score: 66.2 bits (160), Expect = 1.430e-11
Identity = 33/64 (51.56%), Postives = 43/64 (67.19%), Query Frame = 1 
Query:   19 YIPWIFVAFSFLLSGGKPPVLDLLGIAAGHIYYLLQDVIPNMENSLSGGKGLLPTPSFIYDLFN 210
            ++PW+ + FS LL  G   ++DLLGIA GHIYY L+DV PN      GGK LL TPSF+  +F+
Sbjct:  127 FLPWVLMGFSLLL--GNSIIIDLLGIAVGHIYYFLEDVFPNQP----GGKKLLLTPSFLKMVFD 184
[Close]
BLAST of mRNA_M-pyrifera_M_contig125802.5224.1 vs. uniprot
Match: UPI0020096050 (derlin-2 n=1 Tax=Anser cygnoid TaxID=8845 RepID=UPI0020096050)

HSP 1 Score: 66.2 bits (160), Expect = 1.620e-11
Identity = 33/64 (51.56%), Postives = 43/64 (67.19%), Query Frame = 1 
Query:   19 YIPWIFVAFSFLLSGGKPPVLDLLGIAAGHIYYLLQDVIPNMENSLSGGKGLLPTPSFIYDLFN 210
            ++PW+ + FS LL  G   ++DLLGIA GHIYY L+DV PN      GGK LL TPSF+  +F+
Sbjct:  137 FLPWVLMGFSLLL--GNSIIIDLLGIAVGHIYYFLEDVFPNQP----GGKKLLLTPSFLKMVFD 194
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig125802.5224.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A830H7H7_9CHLO4.240e-1350.70Derlin n=2 Tax=Pycnococcus provasolii TaxID=41880 ... [more]
A0A8B9CZZ5_ANSCY2.240e-1251.56Derlin n=1 Tax=Anser cygnoid TaxID=8845 RepID=A0A8... [more]
A0A852DGA9_PASAF3.160e-1251.56Derlin (Fragment) n=1 Tax=Passerina amoena TaxID=1... [more]
UPI001CC553836.750e-1253.13derlin-3 isoform X4 n=1 Tax=Dromiciops gliroides T... [more]
A0A4X2LSJ2_VOMUR7.520e-1253.13Derlin n=3 Tax=Vombatus ursinus TaxID=29139 RepID=... [more]
A0A7K7DZU9_9SYLV1.050e-1151.56Derlin (Fragment) n=9 Tax=Neognathae TaxID=8825 Re... [more]
UPI001CC590321.250e-1153.13derlin-3 isoform X1 n=2 Tax=Dromiciops gliroides T... [more]
A0A091EIZ0_CORBR1.340e-1151.56Derlin (Fragment) n=21 Tax=Passeriformes TaxID=912... [more]
A0A2I0LZ67_COLLI1.430e-1151.56Derlin n=42 Tax=Aves TaxID=8782 RepID=A0A2I0LZ67_C... [more]
UPI00200960501.620e-1151.56derlin-2 n=1 Tax=Anser cygnoid TaxID=8845 RepID=UP... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig125802contigM-pyrifera_M_contig125802:291..500 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score66.2
Seed ortholog evalue6.8e-09
Seed eggNOG ortholog130081.XP_005703031.1
Preferred nameDERL2
KEGG rclassRC00003,RC02120,RC03389,RC03391
KEGG koko:K13989,ko:K19737
KEGG ReactionR11216,R11218,R11220
KEGG Pathwayko04141,map04141
KEGG ModuleM00403
Hectar predicted targeting categorysignal peptide
GOsGO:0001558,GO:0001967,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005769,GO:0005770,GO:0005783,GO:0005789,GO:0006464,GO:0006486,GO:0006487,GO:0006508,GO:0006511,GO:0006517,GO:0006807,GO:0006810,GO:0006886,GO:0006950,GO:0006952,GO:0006986,GO:0007154,GO:0007165,GO:0007610,GO:0007631,GO:0008104,GO:0008150,GO:0008152,GO:0008284,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009605,GO:0009607,GO:0009617,GO:0009892,GO:0009894,GO:0009895,GO:0009987,GO:0010033,GO:0010243,GO:0010498,GO:0010605,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0018193,GO:0018196,GO:0018279,GO:0019222,GO:0019538,GO:0019941,GO:0023052,GO:0030162,GO:0030163,GO:0030176,GO:0030307,GO:0030433,GO:0030968,GO:0030970,GO:0031224,GO:0031227,GO:0031323,GO:0031324,GO:0031329,GO:0031330,GO:0031410,GO:0031982,GO:0031984,GO:0032268,GO:0032269,GO:0032386,GO:0032387,GO:0032527,GO:0032879,GO:0032880,GO:0033036,GO:0033157,GO:0033554,GO:0034613,GO:0034620,GO:0034645,GO:0034976,GO:0035966,GO:0035967,GO:0036211,GO:0036503,GO:0036507,GO:0036508,GO:0040008,GO:0042127,GO:0042175,GO:0042176,GO:0042177,GO:0042221,GO:0042742,GO:0042886,GO:0043161,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043413,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0045861,GO:0045927,GO:0046907,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048585,GO:0050789,GO:0050794,GO:0050896,GO:0051049,GO:0051051,GO:0051128,GO:0051171,GO:0051172,GO:0051179,GO:0051223,GO:0051224,GO:0051234,GO:0051246,GO:0051248,GO:0051603,GO:0051641,GO:0051649,GO:0051704,GO:0051705,GO:0051707,GO:0051716,GO:0060255,GO:0060341,GO:0061136,GO:0065007,GO:0070085,GO:0070201,GO:0070727,GO:0070861,GO:0070862,GO:0070887,GO:0071310,GO:0071702,GO:0071704,GO:0071705,GO:0080090,GO:0080134,GO:0080135,GO:0090087,GO:0090317,GO:0097708,GO:0098542,GO:0098827,GO:1901135,GO:1901137,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576,GO:1901698,GO:1901799,GO:1903050,GO:1903051,GO:1903362,GO:1903363,GO:1903513,GO:1903573,GO:1903827,GO:1903828,GO:1904152,GO:1904153,GO:1904292,GO:1904293,GO:1904380,GO:1904950,GO:1905897
EggNOG free text desc.ubiquitin-dependent ERAD pathway
EggNOG OGsCOG5291@1,KOG0858@2759
EC2.1.1.320
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03036
Exons1
Model size210
Cds size210
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815774.0495405-CDS-M-pyrifera_M_contig125802:290..5001622815774.0495405-CDS-M-pyrifera_M_contig125802:290..500Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig125802 291..500 -
1692277563.0548496-CDS-M-pyrifera_M_contig125802:290..5001692277563.0548496-CDS-M-pyrifera_M_contig125802:290..500Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig125802 291..500 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig125802.5224.1prot_M-pyrifera_M_contig125802.5224.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig125802 291..500 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig125802.5224.1

>prot_M-pyrifera_M_contig125802.5224.1 ID=prot_M-pyrifera_M_contig125802.5224.1|Name=mRNA_M-pyrifera_M_contig125802.5224.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=70bp
FHTFGIYIPWIFVAFSFLLSGGKPPVLDLLGIAAGHIYYLLQDVIPNMEN
SLSGGKGLLPTPSFIYDLFN
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mRNA from alignment at M-pyrifera_M_contig125802:291..500-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig125802.5224.1 ID=mRNA_M-pyrifera_M_contig125802.5224.1|Name=mRNA_M-pyrifera_M_contig125802.5224.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=210bp|location=Sequence derived from alignment at M-pyrifera_M_contig125802:291..500- (Macrocystis pyrifera P11B4 male)
TTCCACACGTTTGGGATTTACATTCCGTGGATTTTTGTGGCCTTCAGCTT
CCTCCTGAGCGGCGGCAAGCCTCCAGTCCTGGACCTGCTTGGCATCGCCG
CGGGCCACATCTACTACCTCCTCCAAGACGTGATCCCCAACATGGAAAAC
AGCCTCTCTGGTGGGAAGGGCCTCCTCCCCACCCCAAGCTTCATCTACGA
CCTCTTCAAT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig125802:291..500-

>mRNA_M-pyrifera_M_contig125802.5224.1 ID=mRNA_M-pyrifera_M_contig125802.5224.1|Name=mRNA_M-pyrifera_M_contig125802.5224.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=420bp|location=Sequence derived from alignment at M-pyrifera_M_contig125802:291..500- (Macrocystis pyrifera P11B4 male)
TTCCACACGTTTGGGATTTACATTCCGTGGATTTTTGTGGCCTTCAGCTT
CCTCCTGAGCGGCGGCAAGCCTCCAGTCCTGGACCTGCTTGGCATCGCCG
CGGGCCACATCTACTACCTCCTCCAAGACGTGATCCCCAACATGGAAAAC
AGCCTCTCTGGTGGGAAGGGCCTCCTCCCCACCCCAAGCTTCATCTACGA
CCTCTTCAATTTCCACACGTTTGGGATTTACATTCCGTGGATTTTTGTGG
CCTTCAGCTTCCTCCTGAGCGGCGGCAAGCCTCCAGTCCTGGACCTGCTT
GGCATCGCCGCGGGCCACATCTACTACCTCCTCCAAGACGTGATCCCCAA
CATGGAAAACAGCCTCTCTGGTGGGAAGGGCCTCCTCCCCACCCCAAGCT
TCATCTACGACCTCTTCAAT
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