mRNA_M-pyrifera_M_contig125776.5212.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig125776.5212.1
Unique NamemRNA_M-pyrifera_M_contig125776.5212.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig125776.5212.1 vs. uniprot
Match: A0A2E9FX61_9RHOB (RNA polymerase sigma factor SigS n=1 Tax=Thalassobius sp. TaxID=1979401 RepID=A0A2E9FX61_9RHOB)

HSP 1 Score: 117 bits (293), Expect = 2.270e-31
Identity = 53/93 (56.99%), Postives = 69/93 (74.19%), Query Frame = 1
Query:    1 INQQTLRTYFDYYFRPLCAFGYRYLGDSEAVQDQVQSVFISLWDNRGNFDNEKAIKTFLYTSVRNKCLNHLKHLSVRQKHEENLIYELESAHF 279
            ++++  +  FD +F  LCAF Y+YL +  A +D VQ  F+S W+   NF+NE AIK FLYTSVRNKCLN+LKH +V+QKHE+NLIYELES  F
Sbjct:   12 LDKKAFKLIFDKFFNALCAFAYKYLNEVSAAEDLVQEAFVSFWEKGENFENESAIKAFLYTSVRNKCLNYLKHQTVKQKHEQNLIYELESDQF 104          
BLAST of mRNA_M-pyrifera_M_contig125776.5212.1 vs. uniprot
Match: A0A2E8N4R6_9RICK (HTH luxR-type domain-containing protein n=3 Tax=Bacteria TaxID=2 RepID=A0A2E8N4R6_9RICK)

HSP 1 Score: 100 bits (248), Expect = 1.310e-24
Identity = 48/90 (53.33%), Postives = 67/90 (74.44%), Query Frame = 1
Query:    4 NQQTLRTYFDYYFRPLCAFGYRYLGDSEAVQDQVQSVFISLWDNRGNFDNEKAIKTFLYTSVRNKCLNHLKHLSVRQKHEENLIYELESA 273
            ++++ +  FD  ++ LCA+  RYL D + V+D VQ  FI+LW  RG+FD+  AIK+FLYTSVRNKCLN LKH +V ++HE  LIYELE++
Sbjct:   11 DKRSFQLIFDEMYQRLCAYSSRYLYDDQEVEDLVQDSFITLWSKRGDFDHINAIKSFLYTSVRNKCLNVLKHQTVIKEHESRLIYELENS 100          
BLAST of mRNA_M-pyrifera_M_contig125776.5212.1 vs. uniprot
Match: A0A2N5Z7Z4_9BACT (RNA polymerase sigma factor SigS n=1 Tax=Salinivirgaceae bacterium TaxID=2053305 RepID=A0A2N5Z7Z4_9BACT)

HSP 1 Score: 90.1 bits (222), Expect = 1.150e-20
Identity = 40/89 (44.94%), Postives = 61/89 (68.54%), Query Frame = 1
Query:    1 INQQTLRTYFDYYFRPLCAFGYRYLGDSEAVQDQVQSVFISLWDNRGNFDNEKAIKTFLYTSVRNKCLNHLKHLSVRQKHEENLIYELE 267
            I+++T +  +  Y+  +CAF Y+YL D++ V+D VQ  F+S W+    FD+  A+K++LYT+VRNKCLN LKH  V+ K+E  +I  LE
Sbjct:   12 ISRKTFQQLYHMYYNAMCAFSYKYLKDTQMVEDLVQEAFVSFWEKNSGFDHLNAVKSYLYTAVRNKCLNLLKHNEVKIKNEHEIIRVLE 100          
BLAST of mRNA_M-pyrifera_M_contig125776.5212.1 vs. uniprot
Match: A0A419WWN5_9BACT (RNA polymerase sigma-70 factor (ECF subfamily) n=1 Tax=Marinifilum flexuosum TaxID=1117708 RepID=A0A419WWN5_9BACT)

HSP 1 Score: 87.8 bits (216), Expect = 9.310e-20
Identity = 38/83 (45.78%), Postives = 58/83 (69.88%), Query Frame = 1
Query:    4 NQQTLRTYFDYYFRPLCAFGYRYLGDSEAVQDQVQSVFISLWDNRGNFDNEKAIKTFLYTSVRNKCLNHLKHLSVRQKHEENL 252
            N+   +  F+ Y+RPLC F  +++ D+E   D VQ  F++LW+ R   ++ KAIK++LY+SVRN CLN+L+H SV+QK EE +
Sbjct:   14 NRVVFKKIFEEYYRPLCGFSRKFIADAEICDDLVQESFLALWNKRSELESYKAIKSYLYSSVRNACLNYLRHESVKQKSEEEI 96          
BLAST of mRNA_M-pyrifera_M_contig125776.5212.1 vs. uniprot
Match: A0A2A4Z4J8_9FLAO (Sigma70_r2 domain-containing protein n=1 Tax=Flavobacteriales bacterium TaxID=2021391 RepID=A0A2A4Z4J8_9FLAO)

HSP 1 Score: 81.6 bits (200), Expect = 2.010e-18
Identity = 36/66 (54.55%), Postives = 49/66 (74.24%), Query Frame = 1
Query:    1 INQQTLRTYFDYYFRPLCAFGYRYLGDSEAVQDQVQSVFISLWDNRGNFDNEKAIKTFLYTSVRNK 198
            I++   +  FD++F+ LCAFGYRY+ D+   +D +Q VFISLW+ R NF++EKAIK FLYTS  NK
Sbjct:   12 IDKNVFKRIFDHHFKVLCAFGYRYVQDTSVSEDMIQEVFISLWEKRQNFNHEKAIKAFLYTSEANK 77          
BLAST of mRNA_M-pyrifera_M_contig125776.5212.1 vs. uniprot
Match: A0A2A4NDM8_9BACT (RNA polymerase subunit sigma-24 n=2 Tax=Bacteroidales bacterium TaxID=2030927 RepID=A0A2A4NDM8_9BACT)

HSP 1 Score: 84.3 bits (207), Expect = 2.170e-18
Identity = 36/83 (43.37%), Postives = 55/83 (66.27%), Query Frame = 1
Query:    4 NQQTLRTYFDYYFRPLCAFGYRYLGDSEAVQDQVQSVFISLWDNRGNFDNEKAIKTFLYTSVRNKCLNHLKHLSVRQKHEENL 252
            N+   ++ F+ Y+RPLC F  +++ DS+   D VQ  F+ LW+ R    +  AIK++LY+SVRN  LNHL+H+ VR K+EE +
Sbjct:   16 NRMVFKSIFEDYYRPLCGFSRKFIDDSDVCDDIVQESFLGLWNKRSEISSYNAIKSYLYSSVRNASLNHLRHMDVRNKNEEEI 98          
BLAST of mRNA_M-pyrifera_M_contig125776.5212.1 vs. uniprot
Match: A0A416W4B1_9BACT (RNA polymerase sigma-70 factor n=1 Tax=Odoribacter sp. AF15-53 TaxID=2292236 RepID=A0A416W4B1_9BACT)

HSP 1 Score: 84.3 bits (207), Expect = 2.220e-18
Identity = 37/84 (44.05%), Postives = 56/84 (66.67%), Query Frame = 1
Query:    4 NQQTLRTYFDYYFRPLCAFGYRYLGDSEAVQDQVQSVFISLWDNRGNFDNEKAIKTFLYTSVRNKCLNHLKHLSVRQKHEENLI 255
            N    +  FD Y+ P+ ++ +RY+ D E ++D VQ  F+ +W+ R +F    AIK+FLYTSVRN CL+HL+H  VR++HE  L+
Sbjct:   16 NSMIFKEIFDRYYLPVKSYAFRYVEDDEVIEDFVQDAFLQVWERREHFFFVAAIKSFLYTSVRNACLDHLRHQKVRRQHEPELV 99          
BLAST of mRNA_M-pyrifera_M_contig125776.5212.1 vs. uniprot
Match: UPI0006D12213 (RNA polymerase sigma-70 factor n=1 Tax=Marinifilum fragile TaxID=570161 RepID=UPI0006D12213)

HSP 1 Score: 82.4 bits (202), Expect = 1.160e-17
Identity = 35/83 (42.17%), Postives = 56/83 (67.47%), Query Frame = 1
Query:    4 NQQTLRTYFDYYFRPLCAFGYRYLGDSEAVQDQVQSVFISLWDNRGNFDNEKAIKTFLYTSVRNKCLNHLKHLSVRQKHEENL 252
            N+   +  F+ Y+RPLC F   ++ D+E   D VQ  F+ LW+ R + ++  AIK++LY+SVRN CLN+L+H  V+QK +E++
Sbjct:   14 NRVVFKKIFEEYYRPLCGFSRNFIPDAEVCDDLVQESFLGLWNKRSDIESYTAIKSYLYSSVRNACLNYLRHQDVKQKSQEDI 96          
BLAST of mRNA_M-pyrifera_M_contig125776.5212.1 vs. uniprot
Match: A0A413IIM4_9BACT (RNA polymerase sigma-70 factor n=5 Tax=Butyricimonas TaxID=574697 RepID=A0A413IIM4_9BACT)

HSP 1 Score: 81.6 bits (200), Expect = 2.520e-17
Identity = 35/86 (40.70%), Postives = 56/86 (65.12%), Query Frame = 1
Query:    4 NQQTLRTYFDYYFRPLCAFGYRYLGDSEAVQDQVQSVFISLWDNRGNFDNEKAIKTFLYTSVRNKCLNHLKHLSVRQKHEENLIYE 261
             +   +  ++ Y   L  FG ++L D   ++D +Q  F+SLW+NR  F+NE AIK+FLYT V+N+CLN+L+H  ++QK+ E  + E
Sbjct:   16 KESAFKEIYEKYVSTLRYFGNKFLSDERLIEDILQDTFVSLWENRKKFNNELAIKSFLYTGVKNRCLNNLRHEKIKQKYVEGFVEE 101          
BLAST of mRNA_M-pyrifera_M_contig125776.5212.1 vs. uniprot
Match: UPI00164C1959 (RNA polymerase sigma-70 factor n=1 Tax=Parabacteroides sp. BX2 TaxID=2763058 RepID=UPI00164C1959)

HSP 1 Score: 79.7 bits (195), Expect = 1.590e-16
Identity = 33/81 (40.74%), Postives = 56/81 (69.14%), Query Frame = 1
Query:    4 NQQTLRTYFDYYFRPLCAFGYRYLGDSEAVQDQVQSVFISLWDNRGNFDNEKAIKTFLYTSVRNKCLNHLKHLSVRQKHEE 246
            ++   RT FD +++PLC +  RY+ + EA++D VQ+VF+ LW+NR +   E +++ +L  SV+N+CLN+LKH   +Q + E
Sbjct:   22 DKNAYRTLFDLFYQPLCVYARRYVDEHEAIEDFVQNVFVMLWENRKDLKIESSVRNYLLVSVKNQCLNYLKHEGYKQSYIE 102          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig125776.5212.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2E9FX61_9RHOB2.270e-3156.99RNA polymerase sigma factor SigS n=1 Tax=Thalassob... [more]
A0A2E8N4R6_9RICK1.310e-2453.33HTH luxR-type domain-containing protein n=3 Tax=Ba... [more]
A0A2N5Z7Z4_9BACT1.150e-2044.94RNA polymerase sigma factor SigS n=1 Tax=Salinivir... [more]
A0A419WWN5_9BACT9.310e-2045.78RNA polymerase sigma-70 factor (ECF subfamily) n=1... [more]
A0A2A4Z4J8_9FLAO2.010e-1854.55Sigma70_r2 domain-containing protein n=1 Tax=Flavo... [more]
A0A2A4NDM8_9BACT2.170e-1843.37RNA polymerase subunit sigma-24 n=2 Tax=Bacteroida... [more]
A0A416W4B1_9BACT2.220e-1844.05RNA polymerase sigma-70 factor n=1 Tax=Odoribacter... [more]
UPI0006D122131.160e-1742.17RNA polymerase sigma-70 factor n=1 Tax=Marinifilum... [more]
A0A413IIM4_9BACT2.520e-1740.70RNA polymerase sigma-70 factor n=5 Tax=Butyricimon... [more]
UPI00164C19591.590e-1640.74RNA polymerase sigma-70 factor n=1 Tax=Parabactero... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig125776contigM-pyrifera_M_contig125776:234..512 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score81.3
Seed ortholog evalue2.7e-13
Seed eggNOG ortholog1288963.ADIS_0793
KEGG koko:K03088
Hectar predicted targeting categoryother localisation
EggNOG free text desc.RNA polymerase sigma factor, sigma-70 family
EggNOG OGs47PH5@768503,4NNBY@976,COG1595@1,COG1595@2
COG Functional cat.K
Best tax levelCytophagia
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03021
Exons1
Model size279
Cds size279
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815773.417792-CDS-M-pyrifera_M_contig125776:233..5121622815773.417792-CDS-M-pyrifera_M_contig125776:233..512Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig125776 234..512 +
1692277562.7144384-CDS-M-pyrifera_M_contig125776:233..5121692277562.7144384-CDS-M-pyrifera_M_contig125776:233..512Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig125776 234..512 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig125776.5212.1prot_M-pyrifera_M_contig125776.5212.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig125776 234..512 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig125776.5212.1

>prot_M-pyrifera_M_contig125776.5212.1 ID=prot_M-pyrifera_M_contig125776.5212.1|Name=mRNA_M-pyrifera_M_contig125776.5212.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=93bp
INQQTLRTYFDYYFRPLCAFGYRYLGDSEAVQDQVQSVFISLWDNRGNFD
NEKAIKTFLYTSVRNKCLNHLKHLSVRQKHEENLIYELESAHF
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mRNA from alignment at M-pyrifera_M_contig125776:234..512+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig125776.5212.1 ID=mRNA_M-pyrifera_M_contig125776.5212.1|Name=mRNA_M-pyrifera_M_contig125776.5212.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=279bp|location=Sequence derived from alignment at M-pyrifera_M_contig125776:234..512+ (Macrocystis pyrifera P11B4 male)
ATTAACCAACAGACCCTGAGAACTTATTTTGATTACTATTTCCGTCCGCT TTGTGCGTTCGGATATCGATACTTGGGAGATTCAGAAGCAGTTCAAGATC AGGTGCAATCGGTATTCATCAGCCTTTGGGATAATCGGGGAAATTTTGAC AATGAAAAAGCTATCAAGACCTTTCTATACACCTCAGTAAGGAACAAATG CCTGAATCACCTCAAACATCTCTCCGTCAGGCAAAAGCACGAAGAAAACC TTATCTATGAATTAGAATCCGCGCATTTT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig125776:234..512+

>mRNA_M-pyrifera_M_contig125776.5212.1 ID=mRNA_M-pyrifera_M_contig125776.5212.1|Name=mRNA_M-pyrifera_M_contig125776.5212.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=558bp|location=Sequence derived from alignment at M-pyrifera_M_contig125776:234..512+ (Macrocystis pyrifera P11B4 male)
ATTAACCAACAGACCCTGAGAACTTATTTTGATTACTATTTCCGTCCGCT
TTGTGCGTTCGGATATCGATACTTGGGAGATTCAGAAGCAGTTCAAGATC
AGGTGCAATCGGTATTCATCAGCCTTTGGGATAATCGGGGAAATTTTGAC
AATGAAAAAGCTATCAAGACCTTTCTATACACCTCAGTAAGGAACAAATG
CCTGAATCACCTCAAACATCTCTCCGTCAGGCAAAAGCACGAAGAAAACC
TTATCTATGAATTAGAATCCGCGCATTTTATTAACCAACAGACCCTGAGA
ACTTATTTTGATTACTATTTCCGTCCGCTTTGTGCGTTCGGATATCGATA
CTTGGGAGATTCAGAAGCAGTTCAAGATCAGGTGCAATCGGTATTCATCA
GCCTTTGGGATAATCGGGGAAATTTTGACAATGAAAAAGCTATCAAGACC
TTTCTATACACCTCAGTAAGGAACAAATGCCTGAATCACCTCAAACATCT
CTCCGTCAGGCAAAAGCACGAAGAAAACCTTATCTATGAATTAGAATCCG
CGCATTTT
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