mRNA_M-pyrifera_M_contig125685.5187.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig125685.5187.1
Unique NamemRNA_M-pyrifera_M_contig125685.5187.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig125685.5187.1 vs. uniprot
Match: A0A7S4IW45_9EUKA (Hypothetical protein n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4IW45_9EUKA)

HSP 1 Score: 74.7 bits (182), Expect = 3.900e-15
Identity = 32/63 (50.79%), Postives = 40/63 (63.49%), Query Frame = 1 
Query:    1 VHGWYVDCSCGLRGVNVDDGKKMMQCDVCKAWQHCKCNGLQASTEEQQARLKAKKVWVCQFCK 189
            + GWY  CSCG  G N DDGK+ +QCDVCK W H KCN + ++T+E       K +WVC  CK
Sbjct:   42 MFGWYFHCSCGASGKNYDDGKRSLQCDVCKVWMHNKCNNVPSTTDELFFFFD-KTIWVCNDCK 103
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BLAST of mRNA_M-pyrifera_M_contig125685.5187.1 vs. uniprot
Match: A0A7S4IEV8_9EUKA (Hypothetical protein n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4IEV8_9EUKA)

HSP 1 Score: 73.9 bits (180), Expect = 1.060e-14
Identity = 29/63 (46.03%), Postives = 39/63 (61.90%), Query Frame = 1 
Query:    1 VHGWYVDCSCGLRGVNVDDGKKMMQCDVCKAWQHCKCNGLQASTEEQQARLKAKKVWVCQFCK 189
            + GW  DC CG  G+N DDGK+ +QCDVCK W H +CN +   +++       K+VWVC  CK
Sbjct:   60 LFGWKFDCRCGASGLNYDDGKRSLQCDVCKIWMHNRCNKVPVKSDDLLVYFYRKRVWVCPQCK 122
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BLAST of mRNA_M-pyrifera_M_contig125685.5187.1 vs. uniprot
Match: A0A7S4IPX0_9EUKA (Hypothetical protein n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4IPX0_9EUKA)

HSP 1 Score: 68.9 bits (167), Expect = 1.380e-12
Identity = 27/63 (42.86%), Postives = 36/63 (57.14%), Query Frame = 1 
Query:    1 VHGWYVDCSCGLRGVNVDDGKKMMQCDVCKAWQHCKCNGLQASTEEQQARLKAKKVWVCQFCK 189
            + GWY +C CG  G N  D K+ +QCDVCK W HC CNG+     E     + + +W+C  CK
Sbjct:   46 LFGWYFECKCGASGSNYCDEKRSLQCDVCKVWMHCSCNGVPTRPAELMQYFR-RYIWICPNCK 107
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BLAST of mRNA_M-pyrifera_M_contig125685.5187.1 vs. uniprot
Match: A0A6A5AGZ7_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5AGZ7_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 4.380e-11
Identity = 26/45 (57.78%), Postives = 31/45 (68.89%), Query Frame = 1 
Query:    1 VHGWYVDCSCGLRGVNVDDGKKMMQCDVCKAWQHCKCNGLQASTE 135
            V  WY +CSCG +G N DDGK+M+QCDVC  WQH  C G+   TE
Sbjct:  126 VEQWYFECSCGDKGSNYDDGKRMVQCDVCVTWQHTACAGIPNETE 170
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BLAST of mRNA_M-pyrifera_M_contig125685.5187.1 vs. uniprot
Match: W4FHH4_9STRA (JmjC domain-containing protein n=4 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FHH4_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 4.810e-11
Identity = 26/45 (57.78%), Postives = 31/45 (68.89%), Query Frame = 1 
Query:    1 VHGWYVDCSCGLRGVNVDDGKKMMQCDVCKAWQHCKCNGLQASTE 135
            V  WY +CSCG +G N DDGK+M+QCDVC  WQH  C G+   TE
Sbjct:  471 VEQWYFECSCGDKGSNYDDGKRMVQCDVCVTWQHTACAGIPNETE 515
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BLAST of mRNA_M-pyrifera_M_contig125685.5187.1 vs. uniprot
Match: A0A418CGA6_9STRA (JmjC domain-containing protein n=5 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A418CGA6_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 6.550e-11
Identity = 26/45 (57.78%), Postives = 31/45 (68.89%), Query Frame = 1 
Query:    1 VHGWYVDCSCGLRGVNVDDGKKMMQCDVCKAWQHCKCNGLQASTE 135
            V  WY +CSCG +G N DDGK+M+QCDVC  WQH  C G+   TE
Sbjct:  401 VEQWYFECSCGDKGSNYDDGKRMVQCDVCVTWQHTACAGILNETE 445
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BLAST of mRNA_M-pyrifera_M_contig125685.5187.1 vs. uniprot
Match: A0A418CR17_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A418CR17_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 6.630e-11
Identity = 26/45 (57.78%), Postives = 31/45 (68.89%), Query Frame = 1 
Query:    1 VHGWYVDCSCGLRGVNVDDGKKMMQCDVCKAWQHCKCNGLQASTE 135
            V  WY +CSCG +G N DDGK+M+QCDVC  WQH  C G+   TE
Sbjct:  401 VEQWYFECSCGDKGSNYDDGKRMVQCDVCVTWQHTACAGILNETE 445
[Close]
BLAST of mRNA_M-pyrifera_M_contig125685.5187.1 vs. uniprot
Match: A0A6G0WJ75_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WJ75_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 2.040e-9
Identity = 21/42 (50.00%), Postives = 30/42 (71.43%), Query Frame = 1 
Query:   10 WYVDCSCGLRGVNVDDGKKMMQCDVCKAWQHCKCNGLQASTE 135
            WY +C+CG +G N DDGK+M+QC+ C  WQH +C G+   +E
Sbjct:  434 WYFECTCGQKGSNYDDGKRMVQCETCNTWQHTQCAGIPNDSE 475
[Close]
BLAST of mRNA_M-pyrifera_M_contig125685.5187.1 vs. uniprot
Match: A0A1V9ZHL5_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZHL5_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 2.060e-9
Identity = 22/42 (52.38%), Postives = 27/42 (64.29%), Query Frame = 1 
Query:   10 WYVDCSCGLRGVNVDDGKKMMQCDVCKAWQHCKCNGLQASTE 135
            WY DC CG  G N DDGK+M+QC++C  WQH  C G+    E
Sbjct:  837 WYFDCQCGQTGHNYDDGKRMVQCEICSTWQHTSCAGIPDDNE 878
[Close]
BLAST of mRNA_M-pyrifera_M_contig125685.5187.1 vs. uniprot
Match: A0A024UJ69_9STRA (JmjC domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UJ69_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 5.220e-9
Identity = 22/42 (52.38%), Postives = 29/42 (69.05%), Query Frame = 1 
Query:   10 WYVDCSCGLRGVNVDDGKKMMQCDVCKAWQHCKCNGLQASTE 135
            WY +CSCG +G N DDGK+M+QC+ C  WQH  C G+   +E
Sbjct:  457 WYFECSCGEKGSNYDDGKRMVQCEKCATWQHTDCAGIPDDSE 498
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig125685.5187.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S4IW45_9EUKA3.900e-1550.79Hypothetical protein n=1 Tax=Vannella sp. CB-2014 ... [more]
A0A7S4IEV8_9EUKA1.060e-1446.03Hypothetical protein n=1 Tax=Vannella sp. CB-2014 ... [more]
A0A7S4IPX0_9EUKA1.380e-1242.86Hypothetical protein n=1 Tax=Vannella sp. CB-2014 ... [more]
A0A6A5AGZ7_9STRA4.380e-1157.78Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
W4FHH4_9STRA4.810e-1157.78JmjC domain-containing protein n=4 Tax=Aphanomyces... [more]
A0A418CGA6_9STRA6.550e-1157.78JmjC domain-containing protein n=5 Tax=Aphanomyces... [more]
A0A418CR17_9STRA6.630e-1157.78Uncharacterized protein n=2 Tax=Aphanomyces astaci... [more]
A0A6G0WJ75_9STRA2.040e-950.00Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A1V9ZHL5_9STRA2.060e-952.38Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
A0A024UJ69_9STRA5.220e-952.38JmjC domain-containing protein n=1 Tax=Aphanomyces... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig125685contigM-pyrifera_M_contig125685:51..296 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score63.5
Seed ortholog evalue3.9e-08
Seed eggNOG ortholog115417.EPrPW00000020959
KEGG rclassRC00185,RC03038
KEGG koko:K10276
KEGG ReactionR10056
Hectar predicted targeting categoryother localisation
GOsGO:0000228,GO:0000785,GO:0000790,GO:0000792,GO:0001672,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005720,GO:0006325,GO:0006338,GO:0006342,GO:0006355,GO:0006357,GO:0006464,GO:0006482,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0008214,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0010639,GO:0010847,GO:0016043,GO:0016458,GO:0016491,GO:0016569,GO:0016570,GO:0016577,GO:0016705,GO:0016706,GO:0019219,GO:0019222,GO:0019538,GO:0030702,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031445,GO:0031452,GO:0031454,GO:0031935,GO:0031974,GO:0031981,GO:0032451,GO:0032452,GO:0033043,GO:0033044,GO:0033696,GO:0036211,GO:0040029,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0044087,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0045798,GO:0045814,GO:0045892,GO:0045934,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051128,GO:0051129,GO:0051171,GO:0051172,GO:0051213,GO:0051252,GO:0051253,GO:0051276,GO:0051864,GO:0055114,GO:0060255,GO:0060968,GO:0065007,GO:0070013,GO:0070076,GO:0070544,GO:0070988,GO:0071704,GO:0071840,GO:0080090,GO:0090052,GO:0090054,GO:0140096,GO:1901564,GO:1902275,GO:1902679,GO:1903506,GO:1903507,GO:1905268,GO:1990141,GO:2000112,GO:2000113,GO:2001141,GO:2001251
EggNOG free text desc.JmjC domain, hydroxylase
EggNOG OGs1MGAV@121069,KOG1633@1,KOG1633@2759,KOG1844@1,KOG1844@2759
EC1.14.11.27
COG Functional cat.B
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03036,ko04121
Exons2
Model size189
Cds size189
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815772.3742151-CDS-M-pyrifera_M_contig125685:50..1401622815772.3742151-CDS-M-pyrifera_M_contig125685:50..140Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig125685 51..140 +
1692277562.2933333-CDS-M-pyrifera_M_contig125685:50..1401692277562.2933333-CDS-M-pyrifera_M_contig125685:50..140Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig125685 51..140 +
1622815772.384511-CDS-M-pyrifera_M_contig125685:197..2961622815772.384511-CDS-M-pyrifera_M_contig125685:197..296Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig125685 198..296 +
1692277562.3035657-CDS-M-pyrifera_M_contig125685:197..2961692277562.3035657-CDS-M-pyrifera_M_contig125685:197..296Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig125685 198..296 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig125685.5187.1prot_M-pyrifera_M_contig125685.5187.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig125685 51..296 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig125685.5187.1

>prot_M-pyrifera_M_contig125685.5187.1 ID=prot_M-pyrifera_M_contig125685.5187.1|Name=mRNA_M-pyrifera_M_contig125685.5187.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=63bp
VHGWYVDCSCGLRGVNVDDGKKMMQCDVCKAWQHCKCNGLQASTEEQQAR
LKAKKVWVCQFCK
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mRNA from alignment at M-pyrifera_M_contig125685:51..296+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig125685.5187.1 ID=mRNA_M-pyrifera_M_contig125685.5187.1|Name=mRNA_M-pyrifera_M_contig125685.5187.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=246bp|location=Sequence derived from alignment at M-pyrifera_M_contig125685:51..296+ (Macrocystis pyrifera P11B4 male)
GTACACGGCTGGTACGTGGATTGCAGCTGTGGGCTGCGAGGAGTGAACGT
GGATGATGGCAAGAAGATGATGCAGTGCGACGTCTGTAAGGTGGGTTTCC
CTTCCCTGTGAGCACGCTATCCCCCTTGTGGTACTGACATTGGACAGGCG
TGGCAGCACTGCAAGTGCAACGGCCTCCAAGCGAGCACAGAAGAGCAGCA
GGCACGGCTGAAGGCTAAGAAGGTGTGGGTATGCCAGTTTTGCAAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig125685:51..296+

>mRNA_M-pyrifera_M_contig125685.5187.1 ID=mRNA_M-pyrifera_M_contig125685.5187.1|Name=mRNA_M-pyrifera_M_contig125685.5187.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=378bp|location=Sequence derived from alignment at M-pyrifera_M_contig125685:51..296+ (Macrocystis pyrifera P11B4 male)
GTACACGGCTGGTACGTGGATTGCAGCTGTGGGCTGCGAGGAGTGAACGT
GGATGATGGCAAGAAGATGATGCAGTGCGACGTCTGTAAGGTACACGGCT
GGTACGTGGATTGCAGCTGTGGGCTGCGAGGAGTGAACGTGGATGATGGC
AAGAAGATGATGCAGTGCGACGTCTGTAAGGCGTGGCAGCACTGCAAGTG
CAACGGCCTCCAAGCGAGCACAGAAGAGCAGCAGGCACGGCTGAAGGCTA
AGAAGGTGTGGGTATGCCAGTTTTGCAAAGCGTGGCAGCACTGCAAGTGC
AACGGCCTCCAAGCGAGCACAGAAGAGCAGCAGGCACGGCTGAAGGCTAA
GAAGGTGTGGGTATGCCAGTTTTGCAAA
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