mRNA_M-pyrifera_M_contig125683.5186.1 (mRNA) Macrocystis pyrifera P11B4 male
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Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig125683.5186.1 vs. uniprot
Match: UPI001AB05A18 (AraC family transcriptional regulator n=1 Tax=Pseudomonas schmalbachii TaxID=2816993 RepID=UPI001AB05A18) HSP 1 Score: 58.9 bits (141), Expect = 8.830e-9 Identity = 33/99 (33.33%), Postives = 50/99 (50.51%), Query Frame = 1
Query: 25 YGACVEVDSLEREYSTAM-----------MARY-LPAAKYLAFTVEGPVAEIAPAYDRTWELVAALHEGKPSCSVNLELYDERFTGPDDPQSRMDLLFP 285
YG C + + E Y + M ++ +PA KY FT G V +IA ++ + + A +P V+ E YDERF+GPDDP++ +DL P
Sbjct: 51 YGICSQAPTGELHYVAGIRVPDSASLPEGMVKFAVPAQKYAVFTHHGTVEQIADSFQAIYSELLARLGLEPKSGVDFERYDERFSGPDDPEAEVDLYIP 149
BLAST of mRNA_M-pyrifera_M_contig125683.5186.1 vs. uniprot
Match: A0A5R9G371_9BACL (MerR family transcriptional regulator n=2 Tax=Paenibacillus antri TaxID=2582848 RepID=A0A5R9G371_9BACL) HSP 1 Score: 59.7 bits (143), Expect = 2.160e-8 Identity = 34/90 (37.78%), Postives = 51/90 (56.67%), Query Frame = 1
Query: 16 RWYYGACVEVDSLEREYSTAMMARYLPAAKYLAFTVEGPVAEIAPAYDRTWELVAALHEGKPSCSVNLELYDERFTGPDDPQSRMDLLFP 285
R+ Y A V+VDS+E + + A+ +PA Y FT G +A + Y+R E A + + + ++ ELYDERF GP D +S +DL P
Sbjct: 201 RFSYMAGVQVDSIE-DVPDGLEAKLVPAQTYAVFTHRGTIAGLQETYERIHETWLAENGLQFAEGIDFELYDERFYGPADERSELDLYIP 289
BLAST of mRNA_M-pyrifera_M_contig125683.5186.1 vs. uniprot
Match: A0A6N7AW91_9FIRM (AraC family transcriptional regulator n=1 Tax=Firmicutes bacterium TaxID=1879010 RepID=A0A6N7AW91_9FIRM) HSP 1 Score: 58.5 bits (140), Expect = 5.340e-8 Identity = 34/87 (39.08%), Postives = 45/87 (51.72%), Query Frame = 1
Query: 25 YGACVEVDSLEREYSTAMMARYLPAAKYLAFTVEGPVAEIAPAYDRTWELVAALHEGKPSCSVNLELYDERFTGPDDPQSRMDLLFP 285
Y AC EV +++ M+AR +PA KYL FT +G V + YD + + V+ ELYDERF PD P S MD+ P
Sbjct: 197 YMACCEVSAVD-SIPEGMIARTIPACKYLVFTHKGSVDNLGETYDFIYGKYIPNANYEIQSKVDFELYDERFK-PDSPDSEMDIYIP 281
BLAST of mRNA_M-pyrifera_M_contig125683.5186.1 vs. uniprot
Match: A0A0P9DNQ4_9BACL (AraC_E_bind domain-containing protein (Fragment) n=2 Tax=Paenibacillus TaxID=44249 RepID=A0A0P9DNQ4_9BACL) HSP 1 Score: 55.5 bits (132), Expect = 3.980e-7 Identity = 33/99 (33.33%), Postives = 48/99 (48.48%), Query Frame = 1
Query: 25 YGACVEVD----SLEREYSTA-------MMARYLPAAKYLAFTVEGPVAEIAPAYDRTWELVAALHEGKPSCSVNLELYDERFTGPDDPQSRMDLLFPA 288
YG C+ S Y TA MM +P Y FT G ++ + + + LH +PS ++LE+YDERFTGP+D Q+++DL P
Sbjct: 104 YGVCIPGSNGDFSYIAGYETAGEHIPNGMMTFTVPEQTYAVFTHTGSLSRLGETMELIYSKWLPLHGLEPSQGMDLEVYDERFTGPEDEQTQIDLYIPV 202
BLAST of mRNA_M-pyrifera_M_contig125683.5186.1 vs. uniprot
Match: UPI00138A00C2 (GyrI-like domain-containing protein n=1 Tax=Chengkuizengella sediminis TaxID=1885917 RepID=UPI00138A00C2) HSP 1 Score: 53.9 bits (128), Expect = 9.150e-7 Identity = 28/94 (29.79%), Postives = 45/94 (47.87%), Query Frame = 1
Query: 4 PTDMRWYYGACVEVDSLEREYSTAMMARYLPAAKYLAFTVEGPVAEIAPAYDRTWELVAALHEGKPSCSVNLELYDERFTGPDDPQSRMDLLFP 285
P + Y + VE+D E ++ + +PA++Y FT +G ++ + A+ +E P + E YDERF GP D S MD+ P
Sbjct: 70 PKTNEFSYVSGVEIDDQTSELPDKIVIKTVPASRYAVFTYKGDMSGVGAAFKYIYETWLPQSGEVPFEDFSFEFYDERFLGPADKNSEMDIYIP 163
BLAST of mRNA_M-pyrifera_M_contig125683.5186.1 vs. uniprot
Match: A0A069Q416_PSEAI (C-di-GMP-binding multidrug transporter transcriptional regulator BrlR n=126 Tax=Gammaproteobacteria TaxID=1236 RepID=A0A069Q416_PSEAI) HSP 1 Score: 54.7 bits (130), Expect = 1.240e-6 Identity = 32/99 (32.32%), Postives = 47/99 (47.47%), Query Frame = 1
Query: 25 YGACVEVDSLEREYSTAM-----------MARY-LPAAKYLAFTVEGPVAEIAPAYDRTWELVAALHEGKPSCSVNLELYDERFTGPDDPQSRMDLLFP 285
YG C + + E Y M R+ +PA KY FT +G +IA ++ + + A +P V+ E YD+RF GP DP S++DL P
Sbjct: 170 YGICAQQPNGEFHYVAGFEVQEGWPVPEGMVRFQVPAQKYAVFTHKGTAPQIAESFQAIYSHLLAERGLEPKAGVDFEYYDQRFRGPLDPNSQVDLYIP 268
BLAST of mRNA_M-pyrifera_M_contig125683.5186.1 vs. uniprot
Match: UPI0005CD8B1A (AraC family transcriptional regulator n=1 Tax=Bacillus alveayuensis TaxID=279215 RepID=UPI0005CD8B1A) HSP 1 Score: 53.9 bits (128), Expect = 2.480e-6 Identity = 34/97 (35.05%), Postives = 52/97 (53.61%), Query Frame = 1
Query: 4 PTDMRWYYGACVEVDSLEREYSTAMMARYLPAAKYLAFTVEGPVAEIAPAYD---RTWELVAALHEGKPSCSVNLELYDERFTGPDDPQSRMDLLFP 285
P D + Y ACV V ++ E M+ + +PA KY+ T +G + + YD TW L + HE + + E+YDERF GP+D +S +D+ P
Sbjct: 191 PNDEEFTYFACVPVTRID-EIPEGMVIKTVPANKYVVVTHKGSLETLGNTYDFIYATW-LPKSGHELAEA--DDFEVYDERFLGPEDEKSEIDIYIP 283
BLAST of mRNA_M-pyrifera_M_contig125683.5186.1 vs. uniprot
Match: A0A2R3ISZ0_PSEAI (MerR family transcriptional regulator n=5 Tax=Pseudomonas aeruginosa TaxID=287 RepID=A0A2R3ISZ0_PSEAI) HSP 1 Score: 53.5 bits (127), Expect = 3.240e-6 Identity = 32/99 (32.32%), Postives = 47/99 (47.47%), Query Frame = 1
Query: 25 YGACVEVDSLEREYSTAM-----------MARYL-PAAKYLAFTVEGPVAEIAPAYDRTWELVAALHEGKPSCSVNLELYDERFTGPDDPQSRMDLLFP 285
YG C + + E Y M R++ PA KY FT +G +IA ++ + + A +P V+ E YD+RF GP DP S++DL P
Sbjct: 170 YGICAQRPNGEFHYVAGFEVQEGWPVPDGMVRFVVPAQKYAVFTHKGTAPQIAESFQAIYSHLLAERGLEPKAGVDFEHYDQRFRGPLDPNSQVDLYIP 268
BLAST of mRNA_M-pyrifera_M_contig125683.5186.1 vs. uniprot
Match: UPI001CF9BFBE (GyrI-like domain-containing protein n=1 Tax=Bacillus carboniphilus TaxID=86663 RepID=UPI001CF9BFBE) HSP 1 Score: 52.4 bits (124), Expect = 3.310e-6 Identity = 28/87 (32.18%), Postives = 47/87 (54.02%), Query Frame = 1
Query: 25 YGACVEVDSLEREYSTAMMARYLPAAKYLAFTVEGPVAEIAPAYDRTWELVAALHEGKPSCSVNLELYDERFTGPDDPQSRMDLLFP 285
Y A EVD + + +++ +P+ KYL FT +GP + I A++ + + + + ELYDERF GP+ P+S +D+ P
Sbjct: 74 YLAAFEVDQVNLP-NDQFISKEIPSQKYLVFTHKGPASTIGKAFNDIFNSYLPSTSYEVLNTPSFELYDERFLGPESPESVIDIYIP 159
BLAST of mRNA_M-pyrifera_M_contig125683.5186.1 vs. uniprot
Match: A0A167FDE9_9BACL (AraC_E_bind domain-containing protein n=1 Tax=Paenibacillus crassostreae TaxID=1763538 RepID=A0A167FDE9_9BACL) HSP 1 Score: 50.8 bits (120), Expect = 1.270e-5 Identity = 29/94 (30.85%), Postives = 47/94 (50.00%), Query Frame = 1
Query: 4 PTDMRWYYGACVEVDSLEREYSTAMMARYLPAAKYLAFTVEGPVAEIAPAYDRTWELVAALHEGKPSCSVNLELYDERFTGPDDPQSRMDLLFP 285
P ++ Y +EV S+ E M+ R +P +Y+ FT +GP ++ + +E + S N+E+YDERF GP+ S D+ FP
Sbjct: 65 PDSDKFEYFIGIEVSSIT-EMPLDMVYREVPKNEYIVFTFKGPAENAGKVHNYLYTTWLKRNEYRLSGLFNIEVYDERFKGPEVEDSYTDIYFP 157 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig125683.5186.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 15
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig125683.5186.1 >prot_M-pyrifera_M_contig125683.5186.1 ID=prot_M-pyrifera_M_contig125683.5186.1|Name=mRNA_M-pyrifera_M_contig125683.5186.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=94bp MRWYYGACVEVDSLEREYSTAMMARYLPAAKYLAFTVEGPVAEIAPAYDRback to top mRNA from alignment at M-pyrifera_M_contig125683:219..512- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig125683.5186.1 ID=mRNA_M-pyrifera_M_contig125683.5186.1|Name=mRNA_M-pyrifera_M_contig125683.5186.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=294bp|location=Sequence derived from alignment at M-pyrifera_M_contig125683:219..512- (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig125683:219..512- >mRNA_M-pyrifera_M_contig125683.5186.1 ID=mRNA_M-pyrifera_M_contig125683.5186.1|Name=mRNA_M-pyrifera_M_contig125683.5186.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=564bp|location=Sequence derived from alignment at M-pyrifera_M_contig125683:219..512- (Macrocystis pyrifera P11B4 male)back to top |