mRNA_M-pyrifera_M_contig125683.5186.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig125683.5186.1
Unique NamemRNA_M-pyrifera_M_contig125683.5186.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig125683.5186.1 vs. uniprot
Match: UPI001AB05A18 (AraC family transcriptional regulator n=1 Tax=Pseudomonas schmalbachii TaxID=2816993 RepID=UPI001AB05A18)

HSP 1 Score: 58.9 bits (141), Expect = 8.830e-9
Identity = 33/99 (33.33%), Postives = 50/99 (50.51%), Query Frame = 1
Query:   25 YGACVEVDSLEREYSTAM-----------MARY-LPAAKYLAFTVEGPVAEIAPAYDRTWELVAALHEGKPSCSVNLELYDERFTGPDDPQSRMDLLFP 285
            YG C +  + E  Y   +           M ++ +PA KY  FT  G V +IA ++   +  + A    +P   V+ E YDERF+GPDDP++ +DL  P
Sbjct:   51 YGICSQAPTGELHYVAGIRVPDSASLPEGMVKFAVPAQKYAVFTHHGTVEQIADSFQAIYSELLARLGLEPKSGVDFERYDERFSGPDDPEAEVDLYIP 149          
BLAST of mRNA_M-pyrifera_M_contig125683.5186.1 vs. uniprot
Match: A0A5R9G371_9BACL (MerR family transcriptional regulator n=2 Tax=Paenibacillus antri TaxID=2582848 RepID=A0A5R9G371_9BACL)

HSP 1 Score: 59.7 bits (143), Expect = 2.160e-8
Identity = 34/90 (37.78%), Postives = 51/90 (56.67%), Query Frame = 1
Query:   16 RWYYGACVEVDSLEREYSTAMMARYLPAAKYLAFTVEGPVAEIAPAYDRTWELVAALHEGKPSCSVNLELYDERFTGPDDPQSRMDLLFP 285
            R+ Y A V+VDS+E +    + A+ +PA  Y  FT  G +A +   Y+R  E   A +  + +  ++ ELYDERF GP D +S +DL  P
Sbjct:  201 RFSYMAGVQVDSIE-DVPDGLEAKLVPAQTYAVFTHRGTIAGLQETYERIHETWLAENGLQFAEGIDFELYDERFYGPADERSELDLYIP 289          
BLAST of mRNA_M-pyrifera_M_contig125683.5186.1 vs. uniprot
Match: A0A6N7AW91_9FIRM (AraC family transcriptional regulator n=1 Tax=Firmicutes bacterium TaxID=1879010 RepID=A0A6N7AW91_9FIRM)

HSP 1 Score: 58.5 bits (140), Expect = 5.340e-8
Identity = 34/87 (39.08%), Postives = 45/87 (51.72%), Query Frame = 1
Query:   25 YGACVEVDSLEREYSTAMMARYLPAAKYLAFTVEGPVAEIAPAYDRTWELVAALHEGKPSCSVNLELYDERFTGPDDPQSRMDLLFP 285
            Y AC EV +++      M+AR +PA KYL FT +G V  +   YD  +         +    V+ ELYDERF  PD P S MD+  P
Sbjct:  197 YMACCEVSAVD-SIPEGMIARTIPACKYLVFTHKGSVDNLGETYDFIYGKYIPNANYEIQSKVDFELYDERFK-PDSPDSEMDIYIP 281          
BLAST of mRNA_M-pyrifera_M_contig125683.5186.1 vs. uniprot
Match: A0A0P9DNQ4_9BACL (AraC_E_bind domain-containing protein (Fragment) n=2 Tax=Paenibacillus TaxID=44249 RepID=A0A0P9DNQ4_9BACL)

HSP 1 Score: 55.5 bits (132), Expect = 3.980e-7
Identity = 33/99 (33.33%), Postives = 48/99 (48.48%), Query Frame = 1
Query:   25 YGACVEVD----SLEREYSTA-------MMARYLPAAKYLAFTVEGPVAEIAPAYDRTWELVAALHEGKPSCSVNLELYDERFTGPDDPQSRMDLLFPA 288
            YG C+       S    Y TA       MM   +P   Y  FT  G ++ +    +  +     LH  +PS  ++LE+YDERFTGP+D Q+++DL  P 
Sbjct:  104 YGVCIPGSNGDFSYIAGYETAGEHIPNGMMTFTVPEQTYAVFTHTGSLSRLGETMELIYSKWLPLHGLEPSQGMDLEVYDERFTGPEDEQTQIDLYIPV 202          
BLAST of mRNA_M-pyrifera_M_contig125683.5186.1 vs. uniprot
Match: UPI00138A00C2 (GyrI-like domain-containing protein n=1 Tax=Chengkuizengella sediminis TaxID=1885917 RepID=UPI00138A00C2)

HSP 1 Score: 53.9 bits (128), Expect = 9.150e-7
Identity = 28/94 (29.79%), Postives = 45/94 (47.87%), Query Frame = 1
Query:    4 PTDMRWYYGACVEVDSLEREYSTAMMARYLPAAKYLAFTVEGPVAEIAPAYDRTWELVAALHEGKPSCSVNLELYDERFTGPDDPQSRMDLLFP 285
            P    + Y + VE+D    E    ++ + +PA++Y  FT +G ++ +  A+   +E         P    + E YDERF GP D  S MD+  P
Sbjct:   70 PKTNEFSYVSGVEIDDQTSELPDKIVIKTVPASRYAVFTYKGDMSGVGAAFKYIYETWLPQSGEVPFEDFSFEFYDERFLGPADKNSEMDIYIP 163          
BLAST of mRNA_M-pyrifera_M_contig125683.5186.1 vs. uniprot
Match: A0A069Q416_PSEAI (C-di-GMP-binding multidrug transporter transcriptional regulator BrlR n=126 Tax=Gammaproteobacteria TaxID=1236 RepID=A0A069Q416_PSEAI)

HSP 1 Score: 54.7 bits (130), Expect = 1.240e-6
Identity = 32/99 (32.32%), Postives = 47/99 (47.47%), Query Frame = 1
Query:   25 YGACVEVDSLEREYSTAM-----------MARY-LPAAKYLAFTVEGPVAEIAPAYDRTWELVAALHEGKPSCSVNLELYDERFTGPDDPQSRMDLLFP 285
            YG C +  + E  Y               M R+ +PA KY  FT +G   +IA ++   +  + A    +P   V+ E YD+RF GP DP S++DL  P
Sbjct:  170 YGICAQQPNGEFHYVAGFEVQEGWPVPEGMVRFQVPAQKYAVFTHKGTAPQIAESFQAIYSHLLAERGLEPKAGVDFEYYDQRFRGPLDPNSQVDLYIP 268          
BLAST of mRNA_M-pyrifera_M_contig125683.5186.1 vs. uniprot
Match: UPI0005CD8B1A (AraC family transcriptional regulator n=1 Tax=Bacillus alveayuensis TaxID=279215 RepID=UPI0005CD8B1A)

HSP 1 Score: 53.9 bits (128), Expect = 2.480e-6
Identity = 34/97 (35.05%), Postives = 52/97 (53.61%), Query Frame = 1
Query:    4 PTDMRWYYGACVEVDSLEREYSTAMMARYLPAAKYLAFTVEGPVAEIAPAYD---RTWELVAALHEGKPSCSVNLELYDERFTGPDDPQSRMDLLFP 285
            P D  + Y ACV V  ++ E    M+ + +PA KY+  T +G +  +   YD    TW L  + HE   +   + E+YDERF GP+D +S +D+  P
Sbjct:  191 PNDEEFTYFACVPVTRID-EIPEGMVIKTVPANKYVVVTHKGSLETLGNTYDFIYATW-LPKSGHELAEA--DDFEVYDERFLGPEDEKSEIDIYIP 283          
BLAST of mRNA_M-pyrifera_M_contig125683.5186.1 vs. uniprot
Match: A0A2R3ISZ0_PSEAI (MerR family transcriptional regulator n=5 Tax=Pseudomonas aeruginosa TaxID=287 RepID=A0A2R3ISZ0_PSEAI)

HSP 1 Score: 53.5 bits (127), Expect = 3.240e-6
Identity = 32/99 (32.32%), Postives = 47/99 (47.47%), Query Frame = 1
Query:   25 YGACVEVDSLEREYSTAM-----------MARYL-PAAKYLAFTVEGPVAEIAPAYDRTWELVAALHEGKPSCSVNLELYDERFTGPDDPQSRMDLLFP 285
            YG C +  + E  Y               M R++ PA KY  FT +G   +IA ++   +  + A    +P   V+ E YD+RF GP DP S++DL  P
Sbjct:  170 YGICAQRPNGEFHYVAGFEVQEGWPVPDGMVRFVVPAQKYAVFTHKGTAPQIAESFQAIYSHLLAERGLEPKAGVDFEHYDQRFRGPLDPNSQVDLYIP 268          
BLAST of mRNA_M-pyrifera_M_contig125683.5186.1 vs. uniprot
Match: UPI001CF9BFBE (GyrI-like domain-containing protein n=1 Tax=Bacillus carboniphilus TaxID=86663 RepID=UPI001CF9BFBE)

HSP 1 Score: 52.4 bits (124), Expect = 3.310e-6
Identity = 28/87 (32.18%), Postives = 47/87 (54.02%), Query Frame = 1
Query:   25 YGACVEVDSLEREYSTAMMARYLPAAKYLAFTVEGPVAEIAPAYDRTWELVAALHEGKPSCSVNLELYDERFTGPDDPQSRMDLLFP 285
            Y A  EVD +    +   +++ +P+ KYL FT +GP + I  A++  +         +   + + ELYDERF GP+ P+S +D+  P
Sbjct:   74 YLAAFEVDQVNLP-NDQFISKEIPSQKYLVFTHKGPASTIGKAFNDIFNSYLPSTSYEVLNTPSFELYDERFLGPESPESVIDIYIP 159          
BLAST of mRNA_M-pyrifera_M_contig125683.5186.1 vs. uniprot
Match: A0A167FDE9_9BACL (AraC_E_bind domain-containing protein n=1 Tax=Paenibacillus crassostreae TaxID=1763538 RepID=A0A167FDE9_9BACL)

HSP 1 Score: 50.8 bits (120), Expect = 1.270e-5
Identity = 29/94 (30.85%), Postives = 47/94 (50.00%), Query Frame = 1
Query:    4 PTDMRWYYGACVEVDSLEREYSTAMMARYLPAAKYLAFTVEGPVAEIAPAYDRTWELVAALHEGKPSCSVNLELYDERFTGPDDPQSRMDLLFP 285
            P   ++ Y   +EV S+  E    M+ R +P  +Y+ FT +GP       ++  +      +E + S   N+E+YDERF GP+   S  D+ FP
Sbjct:   65 PDSDKFEYFIGIEVSSIT-EMPLDMVYREVPKNEYIVFTFKGPAENAGKVHNYLYTTWLKRNEYRLSGLFNIEVYDERFKGPEVEDSYTDIYFP 157          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig125683.5186.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
UPI001AB05A188.830e-933.33AraC family transcriptional regulator n=1 Tax=Pseu... [more]
A0A5R9G371_9BACL2.160e-837.78MerR family transcriptional regulator n=2 Tax=Paen... [more]
A0A6N7AW91_9FIRM5.340e-839.08AraC family transcriptional regulator n=1 Tax=Firm... [more]
A0A0P9DNQ4_9BACL3.980e-733.33AraC_E_bind domain-containing protein (Fragment) n... [more]
UPI00138A00C29.150e-729.79GyrI-like domain-containing protein n=1 Tax=Chengk... [more]
A0A069Q416_PSEAI1.240e-632.32C-di-GMP-binding multidrug transporter transcripti... [more]
UPI0005CD8B1A2.480e-635.05AraC family transcriptional regulator n=1 Tax=Baci... [more]
A0A2R3ISZ0_PSEAI3.240e-632.32MerR family transcriptional regulator n=5 Tax=Pseu... [more]
UPI001CF9BFBE3.310e-632.18GyrI-like domain-containing protein n=1 Tax=Bacill... [more]
A0A167FDE9_9BACL1.270e-530.85AraC_E_bind domain-containing protein n=1 Tax=Paen... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig125683contigM-pyrifera_M_contig125683:219..512 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score62.8
Seed ortholog evalue1e-07
Seed eggNOG ortholog1123487.KB892867_gene994
KEGG koko:K13653
Hectar predicted targeting categoryother localisation
EggNOG free text desc.helix_turn_helix, mercury resistance
EggNOG OGs1MWN0@1224,2VY1V@28216,COG0789@1,COG0789@2,COG3708@1,COG3708@2
COG Functional cat.K
Best tax levelBetaproteobacteria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03000
Exons1
Model size294
Cds size282
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815772.3323-CDS-M-pyrifera_M_contig125683:218..5001622815772.3323-CDS-M-pyrifera_M_contig125683:218..500Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig125683 219..500 -
1692277562.275014-CDS-M-pyrifera_M_contig125683:218..5001692277562.275014-CDS-M-pyrifera_M_contig125683:218..500Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig125683 219..500 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815772.3427207-UTR-M-pyrifera_M_contig125683:500..5121622815772.3427207-UTR-M-pyrifera_M_contig125683:500..512Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig125683 501..512 -
1692277562.284442-UTR-M-pyrifera_M_contig125683:500..5121692277562.284442-UTR-M-pyrifera_M_contig125683:500..512Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig125683 501..512 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig125683.5186.1prot_M-pyrifera_M_contig125683.5186.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig125683 219..500 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig125683.5186.1

>prot_M-pyrifera_M_contig125683.5186.1 ID=prot_M-pyrifera_M_contig125683.5186.1|Name=mRNA_M-pyrifera_M_contig125683.5186.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=94bp
MRWYYGACVEVDSLEREYSTAMMARYLPAAKYLAFTVEGPVAEIAPAYDR
TWELVAALHEGKPSCSVNLELYDERFTGPDDPQSRMDLLFPAP*
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mRNA from alignment at M-pyrifera_M_contig125683:219..512-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig125683.5186.1 ID=mRNA_M-pyrifera_M_contig125683.5186.1|Name=mRNA_M-pyrifera_M_contig125683.5186.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=294bp|location=Sequence derived from alignment at M-pyrifera_M_contig125683:219..512- (Macrocystis pyrifera P11B4 male)
TTTCCCACGGACATGCGTTGGTACTACGGGGCGTGCGTCGAAGTCGATTC TTTGGAACGCGAGTACTCCACGGCGATGATGGCTCGCTACCTGCCGGCGG CCAAGTACTTGGCGTTCACGGTCGAGGGCCCCGTTGCCGAGATTGCGCCG GCCTACGATCGAACGTGGGAGCTAGTCGCGGCACTCCACGAGGGTAAGCC GAGCTGCTCAGTCAATCTCGAACTCTACGACGAGCGGTTCACCGGGCCCG ACGACCCGCAGTCGCGGATGGACCTACTGTTTCCTGCCCCTTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig125683:219..512-

>mRNA_M-pyrifera_M_contig125683.5186.1 ID=mRNA_M-pyrifera_M_contig125683.5186.1|Name=mRNA_M-pyrifera_M_contig125683.5186.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=564bp|location=Sequence derived from alignment at M-pyrifera_M_contig125683:219..512- (Macrocystis pyrifera P11B4 male)
ATGCGTTGGTACTACGGGGCGTGCGTCGAAGTCGATTCTTTGGAACGCGA
GTACTCCACGGCGATGATGGCTCGCTACCTGCCGGCGGCCAAGTACTTGG
CGTTCACGGTCGAGGGCCCCGTTGCCGAGATTGCGCCGGCCTACGATCGA
ACGTGGGAGCTAGTCGCGGCACTCCACGAGGGTAAGCCGAGCTGCTCAGT
CAATCTCGAACTCTACGACGAGCGGTTCACCGGGCCCGACGACCCGCAGT
CGCGGATGGACCTACTGTTTCCTGCCCCTTAGATGCGTTGGTACTACGGG
GCGTGCGTCGAAGTCGATTCTTTGGAACGCGAGTACTCCACGGCGATGAT
GGCTCGCTACCTGCCGGCGGCCAAGTACTTGGCGTTCACGGTCGAGGGCC
CCGTTGCCGAGATTGCGCCGGCCTACGATCGAACGTGGGAGCTAGTCGCG
GCACTCCACGAGGGTAAGCCGAGCTGCTCAGTCAATCTCGAACTCTACGA
CGAGCGGTTCACCGGGCCCGACGACCCGCAGTCGCGGATGGACCTACTGT
TTCCTGCCCCTTAG
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