mRNA_M-pyrifera_M_contig125551.5164.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig125551.5164.1
Unique NamemRNA_M-pyrifera_M_contig125551.5164.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig125551.5164.1 vs. uniprot
Match: UPI0018DA13F6 (exonuclease mut-7 homolog n=1 Tax=Patiria miniata TaxID=46514 RepID=UPI0018DA13F6)

HSP 1 Score: 62.8 bits (151), Expect = 1.370e-8
Identity = 51/160 (31.87%), Postives = 78/160 (48.75%), Query Frame = 1
Query:   19 RVRLVQVATPEMIYLIDMHVMFRNPTKEEKKKLGEALALALFQPAPTVSNPLLVGFAVSGDVKAL---HPYTSPHMHKLERQRVVVDVKTHPKVTAH-----LKASGRSKKDFTS-----LAKMTECFYGKGLGKLWTMSDWSKRPLLPGQIEYAALDAW 459
            RV LVQ+AT + +YL+DM  +                  + F    + S  L +GF +SGD K L   +P     +  ++R   +VD++T  K         LK +  S+ D +      L+K+T   +G+ L K   +S+W KRPL P Q +YAALDA+
Sbjct:  406 RVALVQLATVDWVYLLDMITLMATAADR---------ITSFFLRFLSSSQVLKLGFGISGDFKTLTKPYPGLKGPVEAIQR---MVDLETLSKQILEAEPDFLKGAETSETDSSGPSVKGLSKLTLMCFGRALDKKQQLSNWEKRPLRPSQAQYAALDAY 553          
BLAST of mRNA_M-pyrifera_M_contig125551.5164.1 vs. uniprot
Match: K7E1H7_MONDO (3'-5' exonuclease domain-containing protein n=1 Tax=Monodelphis domestica TaxID=13616 RepID=K7E1H7_MONDO)

HSP 1 Score: 61.6 bits (148), Expect = 3.510e-8
Identity = 49/153 (32.03%), Postives = 84/153 (54.90%), Query Frame = 1
Query:   19 RVRLVQVATPEMIYLIDMHVMFRNPTKEEKKKLGEALALALFQPAPTVSNPLLVGFAVSGDVKALHPYTSPHMHKLERQR------VVVDVKTHPKVTAHLKASGRSKKDFTSLAKMTECFYGKGLGKLWTMSDWSKRPLLPGQIEYAALDAW 459
            RV ++Q+AT E +YL+D+ + F    KEEK+K       +LF   P+++    +G+ +SGD+ +L   T P + ++E+Q       + VD +   + ++  K +  ++K    L+ + +   GK L K   +S+W KRPL   QI YAA DA+
Sbjct:  217 RVSVLQIATKEHVYLLDL-LQFSKLDKEEKEKELCHFIWSLFS-EPSITK---LGYGMSGDLCSLST-TYPALREMEKQAQGILDLLQVDKQVRKEPSSKTKRTRHAEK---GLSLLVQNLLGKPLDKREQLSNWEKRPLREEQILYAASDAY 360          
BLAST of mRNA_M-pyrifera_M_contig125551.5164.1 vs. uniprot
Match: UPI0018D89DD9 (exonuclease mut-7 homolog isoform X1 n=3 Tax=Patiria miniata TaxID=46514 RepID=UPI0018D89DD9)

HSP 1 Score: 58.9 bits (141), Expect = 3.200e-7
Identity = 53/163 (32.52%), Postives = 77/163 (47.24%), Query Frame = 1
Query:   19 RVRLVQVATPEMIYLIDMHVMFRNPTKEEKKKLGEALALALFQPAPTVSNPLLVGFAVSGDVKAL---HPYTSPHMHKLERQRVVVDVKTHPKV-------------TAHLKASGRSKKDFTSLAKMTECFYGKGLGKLWTMSDWSKRPLLPGQIEYAALDAW 459
            RV LVQ+AT + +YL+DM  +        +         + F    + S  L +GF +SGD K L   +P     +  ++R   +VD+ T  K              T+   +SG S K  + L  M  CF G+ L K   +S+W KRPL P Q +YAALDA+
Sbjct:  480 RVALVQLATLDWVYLLDMITLMATAADRIR---------SFFLRFLSSSQVLKLGFGISGDFKMLTKSYPGLKGPVAAVQR---MVDLDTLSKQILKAEPDFLKRAETSETDSSGPSVKGLSELTLM--CF-GRALDKKEQLSNWEKRPLRPSQAQYAALDAY 627          
BLAST of mRNA_M-pyrifera_M_contig125551.5164.1 vs. uniprot
Match: A0A7S1ALL8_NOCSC (Hypothetical protein n=1 Tax=Noctiluca scintillans TaxID=2966 RepID=A0A7S1ALL8_NOCSC)

HSP 1 Score: 58.5 bits (140), Expect = 3.910e-7
Identity = 47/147 (31.97%), Postives = 73/147 (49.66%), Query Frame = 1
Query:   28 LVQVATPEMIYLIDMHVMFRNPTKEEKKKLGEALALALFQPAPTVSNPLLVGFAVSGDVKALHPYTSPHMHKLERQRVVVDVKTHPKVTAHLKASGRSKK---DFTSLAKMTECFYGKGLGKLWTMSDWSKRPLLPGQIEYAALDAW 459
            L+Q++T E+ +++D+  +  +        L E L    F P+ T      V F  + D+  +    S    KL+R      +  +    A  ++SG S K   D  SL+K+   + G+ L K   MSDWS+RPL  GQ++YAALDAW
Sbjct:  356 LLQISTAEVAFVVDLLALGGSDA------LAEVLDGVFFHPSITK-----VSFEGTTDLSRIAKCYS----KLQRSPQATPL-VNLGQAAFDRSSGTSNKKARDSVSLSKLVNTYLGRPLDKSLQMSDWSRRPLSHGQLQYAALDAW 486          
BLAST of mRNA_M-pyrifera_M_contig125551.5164.1 vs. uniprot
Match: R1CUJ0_EMIHU (3'-5' exonuclease domain-containing protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1CUJ0_EMIHU)

HSP 1 Score: 56.2 bits (134), Expect = 2.510e-6
Identity = 41/117 (35.04%), Postives = 55/117 (47.01%), Query Frame = 1
Query:  106 KKKLGEALALALFQPAPTVSNPLLVGFAVSGDVKALHPYTSPHMHKLERQRVVVDVKTHPKVTAHLKASGRSKKDFTSLAKMTECFYGKGLGKLWTMSDWSKRPLLPGQIEYAALDA 456
            ++ +GE L  AL           ++GFA  GD+  L P     +H     R +VD++        L   GR      SL ++     GK L K    SDW++RPLLP QI YAALDA
Sbjct:  413 RRAVGELLRWALNGDPADDDAVAVLGFAFQGDLSVLRPICGSDLHA----RALVDLQ-------QLARQGREDSQ-PSLRRVCARTLGKALDKAEQCSDWARRPLLPAQIRYAALDA 517          
BLAST of mRNA_M-pyrifera_M_contig125551.5164.1 vs. uniprot
Match: R1FEZ3_EMIHU (3'-5' exonuclease domain-containing protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1FEZ3_EMIHU)

HSP 1 Score: 55.8 bits (133), Expect = 3.460e-6
Identity = 41/117 (35.04%), Postives = 55/117 (47.01%), Query Frame = 1
Query:  106 KKKLGEALALALFQPAPTVSNPLLVGFAVSGDVKALHPYTSPHMHKLERQRVVVDVKTHPKVTAHLKASGRSKKDFTSLAKMTECFYGKGLGKLWTMSDWSKRPLLPGQIEYAALDA 456
            ++ +GE L  AL           ++GFA  GD+  L P     +H     R +VD++        L   GR      SL ++     GK L K    SDW++RPLLP QI YAALDA
Sbjct:  388 RRAVGELLRWALNGDPADDDAVAVLGFAFQGDLSVLRPICGGDLHA----RALVDLQ-------QLARQGREDSQ-PSLRRVCARTLGKALDKAEQCSDWARRPLLPAQIRYAALDA 492          
BLAST of mRNA_M-pyrifera_M_contig125551.5164.1 vs. uniprot
Match: G3VE29_SARHA (3'-5' exonuclease domain-containing protein n=1 Tax=Sarcophilus harrisii TaxID=9305 RepID=G3VE29_SARHA)

HSP 1 Score: 55.8 bits (133), Expect = 3.610e-6
Identity = 49/155 (31.61%), Postives = 82/155 (52.90%), Query Frame = 1
Query:   19 RVRLVQVATPEMIYLIDMHVMFRNPTKEEKKKLGEALALALFQPAPTVSNPLLV--GFAVSGDVKALHPYTSPHMHKLERQR------VVVDVKTHPKVTAHLKASGRSKKDFTSLAKMTECFYGKGLGKLWTMSDWSKRPLLPGQIEYAALDAW 459
            RV ++Q+AT E +YL+D+ + F    +EEK+K        LF      S+P ++  G+ +SGD+ +L   T P + ++E+Q       + VD +     +   K+  +++K    L+ + +   GK L K   +S+W KRPL   QI YAA DA+
Sbjct:  326 RVSVLQIATKEHVYLLDL-LQFSKLDQEEKEKELCHFIWKLF------SDPSIIKLGYGMSGDLCSLST-TYPALREMEKQAQGILDLLQVDKQVRMGPSFITKSPRQAEK---GLSLLVQNLLGKPLDKTEQLSNWEKRPLREEQILYAASDAY 469          
BLAST of mRNA_M-pyrifera_M_contig125551.5164.1 vs. uniprot
Match: UPI0004433654 (exonuclease mut-7 homolog n=2 Tax=Didelphinae TaxID=126287 RepID=UPI0004433654)

HSP 1 Score: 53.9 bits (128), Expect = 1.720e-5
Identity = 52/167 (31.14%), Postives = 83/167 (49.70%), Query Frame = 1
Query:   19 RVRLVQVATPEMIYLIDMHVMFRNPTKEEKKKLGEALALALFQPAPTVSNPLLVGFAVSGDVKALHPYTSPHMHKLERQ-RVVVDV--------------KTHPKVTAHLKASGRSKKDFT-----SLAKMTECFYGKGLGKLWTMSDWSKRPLLPGQIEYAALDAW 459
            RV ++Q+AT E +YL+D+ + F    KEEK+K       +LF   P+++    +G+ +SGD+ +L   T P + ++E+Q + ++D+              K H      L     SK   T      L+ + +   GK L K   +S+W KRPL   QI YAA DA+
Sbjct:  494 RVSVLQIATKEHVYLLDL-LQFSKLDKEEKEKELCHFIWSLFS-EPSITK---LGYGMSGDLCSLST-TYPALREMEKQAQGILDLLQVDKQLQKNSGLWKKHHIPVDSLCQEPSSKTKRTRHAEKGLSLLVQNLLGKPLDKREQLSNWEKRPLREEQILYAASDAY 654          
BLAST of mRNA_M-pyrifera_M_contig125551.5164.1 vs. uniprot
Match: UPI001F049C4B (exonuclease mut-7 homolog isoform X1 n=2 Tax=Xenia sp. Carnegie-2017 TaxID=2897299 RepID=UPI001F049C4B)

HSP 1 Score: 53.9 bits (128), Expect = 1.770e-5
Identity = 43/159 (27.04%), Postives = 75/159 (47.17%), Query Frame = 1
Query:   19 RVRLVQVATPEMIYLIDMHVMFRNPTKEEKKKLGEALALALFQPAPTVSNPLLVGFAVSGDVKALHPYTSPHMHK-LERQRVVVDVKTHPKVTAHLKASGRSKKDFTS------------LAKMTECFYGKGLGKLWTMSDWSKRPLLPGQIEYAALDA 456
            R+ +VQ++  + ++++D+  +     +      G A+           +N L +G+ V  D KAL   T P + K +++ +  VD+ T  +    + A  R   + T             L+ + +   G  L K + +SDW +RPLLP Q+EYAALDA
Sbjct:  731 RLSIVQLSLRDRVFILDVIAIANEVPRNTILSFGNAVFAN--------ANVLKLGYGVESDFKALIA-TLPILEKSIKKMKSFVDLCTFSRKLFQIPAVRRRVDETTKSLTFFGHLSEKGLSLLVQQCLGSPLDKTYQLSDWEQRPLLPKQVEYAALDA 880          
BLAST of mRNA_M-pyrifera_M_contig125551.5164.1 vs. uniprot
Match: A0A7S0WGV7_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Ostreococcus mediterraneus TaxID=1486918 RepID=A0A7S0WGV7_9CHLO)

HSP 1 Score: 53.5 bits (127), Expect = 2.020e-5
Identity = 25/40 (62.50%), Postives = 28/40 (70.00%), Query Frame = 1
Query:  340 LAKMTECFYGKGLGKLWTMSDWSKRPLLPGQIEYAALDAW 459
            L+ +T    GK L K   MSDWS+RPLLP QI YAALDAW
Sbjct:  359 LSTLTAVVLGKPLDKAMRMSDWSRRPLLPTQINYAALDAW 398          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig125551.5164.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
UPI0018DA13F61.370e-831.88exonuclease mut-7 homolog n=1 Tax=Patiria miniata ... [more]
K7E1H7_MONDO3.510e-832.033'-5' exonuclease domain-containing protein n=1 Ta... [more]
UPI0018D89DD93.200e-732.52exonuclease mut-7 homolog isoform X1 n=3 Tax=Patir... [more]
A0A7S1ALL8_NOCSC3.910e-731.97Hypothetical protein n=1 Tax=Noctiluca scintillans... [more]
R1CUJ0_EMIHU2.510e-635.043'-5' exonuclease domain-containing protein n=1 Ta... [more]
R1FEZ3_EMIHU3.460e-635.043'-5' exonuclease domain-containing protein n=1 Ta... [more]
G3VE29_SARHA3.610e-631.613'-5' exonuclease domain-containing protein n=1 Ta... [more]
UPI00044336541.720e-531.14exonuclease mut-7 homolog n=2 Tax=Didelphinae TaxI... [more]
UPI001F049C4B1.770e-527.04exonuclease mut-7 homolog isoform X1 n=2 Tax=Xenia... [more]
A0A7S0WGV7_9CHLO2.020e-562.50Hypothetical protein (Fragment) n=1 Tax=Ostreococc... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig125551contigM-pyrifera_M_contig125551:3..461 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score67.8
Seed ortholog evalue5.1e-09
Seed eggNOG ortholog7668.SPU_019209-tr
Preferred nameEXD3
Hectar predicted targeting categoryother localisation
GOsGO:0000018,GO:0000175,GO:0000335,GO:0000337,GO:0003008,GO:0003674,GO:0003824,GO:0004518,GO:0004527,GO:0004532,GO:0004540,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006725,GO:0006807,GO:0007610,GO:0007611,GO:0007612,GO:0007635,GO:0008150,GO:0008152,GO:0008306,GO:0008355,GO:0008408,GO:0009892,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010528,GO:0010529,GO:0010586,GO:0010605,GO:0010608,GO:0010629,GO:0014070,GO:0016070,GO:0016246,GO:0016441,GO:0016458,GO:0016787,GO:0016788,GO:0016796,GO:0016896,GO:0019219,GO:0019222,GO:0031047,GO:0031050,GO:0031123,GO:0031323,GO:0031324,GO:0032501,GO:0032991,GO:0034470,GO:0034587,GO:0034641,GO:0034660,GO:0035194,GO:0035195,GO:0035196,GO:0040029,GO:0042048,GO:0042221,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043331,GO:0043628,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0044747,GO:0044748,GO:0045910,GO:0045934,GO:0046483,GO:0048471,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050877,GO:0050890,GO:0050896,GO:0051052,GO:0051053,GO:0051171,GO:0051172,GO:0051716,GO:0060255,GO:0065007,GO:0070887,GO:0070918,GO:0071310,GO:0071359,GO:0071407,GO:0071704,GO:0080090,GO:0090304,GO:0090305,GO:0090501,GO:0090503,GO:0140098,GO:1901360,GO:1901698,GO:1901699,GO:1990904
EggNOG free text desc.Exonuclease 3'-5' domain containing 3
EggNOG OGs38F6R@33154,3BGHH@33208,3D07C@33213,KOG2207@1,KOG2207@2759
COG Functional cat.L
Best tax levelBilateria
Best eggNOG OGNA|NA|NA
Exons1
Model size459
Cds size459
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815771.1523838-CDS-M-pyrifera_M_contig125551:2..4611622815771.1523838-CDS-M-pyrifera_M_contig125551:2..461Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig125551 3..461 -
1692277561.6365921-CDS-M-pyrifera_M_contig125551:2..4611692277561.6365921-CDS-M-pyrifera_M_contig125551:2..461Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig125551 3..461 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig125551.5164.1prot_M-pyrifera_M_contig125551.5164.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig125551 3..461 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig125551.5164.1

>prot_M-pyrifera_M_contig125551.5164.1 ID=prot_M-pyrifera_M_contig125551.5164.1|Name=mRNA_M-pyrifera_M_contig125551.5164.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=153bp
EGDEEDRVRLVQVATPEMIYLIDMHVMFRNPTKEEKKKLGEALALALFQP
APTVSNPLLVGFAVSGDVKALHPYTSPHMHKLERQRVVVDVKTHPKVTAH
LKASGRSKKDFTSLAKMTECFYGKGLGKLWTMSDWSKRPLLPGQIEYAAL
DAW
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mRNA from alignment at M-pyrifera_M_contig125551:3..461-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig125551.5164.1 ID=mRNA_M-pyrifera_M_contig125551.5164.1|Name=mRNA_M-pyrifera_M_contig125551.5164.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=459bp|location=Sequence derived from alignment at M-pyrifera_M_contig125551:3..461- (Macrocystis pyrifera P11B4 male)
GAAGGTGATGAGGAAGATCGGGTGCGATTGGTACAGGTGGCAACACCAGA GATGATTTACTTGATTGATATGCATGTGATGTTTCGAAACCCCACGAAAG AGGAGAAGAAAAAGCTGGGAGAAGCTCTGGCACTGGCACTCTTTCAGCCT GCTCCCACTGTCTCCAACCCACTCCTTGTCGGGTTTGCTGTGAGTGGAGA TGTCAAAGCTCTACACCCCTACACTTCCCCACACATGCACAAACTCGAGA GGCAGCGAGTTGTTGTTGACGTCAAGACCCATCCCAAGGTCACGGCACAC CTCAAAGCAAGCGGCAGGAGCAAAAAAGACTTTACCAGCCTCGCAAAGAT GACAGAGTGCTTCTACGGAAAAGGACTCGGCAAGTTGTGGACCATGAGTG ATTGGTCCAAGAGACCACTGCTCCCTGGACAAATCGAATACGCTGCTCTC GATGCATGG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig125551:3..461-

>mRNA_M-pyrifera_M_contig125551.5164.1 ID=mRNA_M-pyrifera_M_contig125551.5164.1|Name=mRNA_M-pyrifera_M_contig125551.5164.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=918bp|location=Sequence derived from alignment at M-pyrifera_M_contig125551:3..461- (Macrocystis pyrifera P11B4 male)
GAAGGTGATGAGGAAGATCGGGTGCGATTGGTACAGGTGGCAACACCAGA
GATGATTTACTTGATTGATATGCATGTGATGTTTCGAAACCCCACGAAAG
AGGAGAAGAAAAAGCTGGGAGAAGCTCTGGCACTGGCACTCTTTCAGCCT
GCTCCCACTGTCTCCAACCCACTCCTTGTCGGGTTTGCTGTGAGTGGAGA
TGTCAAAGCTCTACACCCCTACACTTCCCCACACATGCACAAACTCGAGA
GGCAGCGAGTTGTTGTTGACGTCAAGACCCATCCCAAGGTCACGGCACAC
CTCAAAGCAAGCGGCAGGAGCAAAAAAGACTTTACCAGCCTCGCAAAGAT
GACAGAGTGCTTCTACGGAAAAGGACTCGGCAAGTTGTGGACCATGAGTG
ATTGGTCCAAGAGACCACTGCTCCCTGGACAAATCGAATACGCTGCTCTC
GATGCATGGGAAGGTGATGAGGAAGATCGGGTGCGATTGGTACAGGTGGC
AACACCAGAGATGATTTACTTGATTGATATGCATGTGATGTTTCGAAACC
CCACGAAAGAGGAGAAGAAAAAGCTGGGAGAAGCTCTGGCACTGGCACTC
TTTCAGCCTGCTCCCACTGTCTCCAACCCACTCCTTGTCGGGTTTGCTGT
GAGTGGAGATGTCAAAGCTCTACACCCCTACACTTCCCCACACATGCACA
AACTCGAGAGGCAGCGAGTTGTTGTTGACGTCAAGACCCATCCCAAGGTC
ACGGCACACCTCAAAGCAAGCGGCAGGAGCAAAAAAGACTTTACCAGCCT
CGCAAAGATGACAGAGTGCTTCTACGGAAAAGGACTCGGCAAGTTGTGGA
CCATGAGTGATTGGTCCAAGAGACCACTGCTCCCTGGACAAATCGAATAC
GCTGCTCTCGATGCATGG
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