mRNA_M-pyrifera_M_contig12555.5163.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig12555.5163.1
Unique NamemRNA_M-pyrifera_M_contig12555.5163.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig12555.5163.1 vs. uniprot
Match: A0A6H5KQ23_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ23_9PHAE)

HSP 1 Score: 139 bits (350), Expect = 2.690e-36
Identity = 120/225 (53.33%), Postives = 136/225 (60.44%), Query Frame = 1 
Query:    7 IFKRRSSKDLSARIGYDLNPKKYEGGIPTSGASPST-----SMAPVSNITT-GGPSHQKQASSS--SILSYRKTSAPSPHGMGGGGVDDISYGGTPLAAGPSPLSSFKQSLPPTMSTKSLGQGPALCDAPPRXXXXXXXXXXXGSPSKQQIEPPAKSLVIGEGVLFEGTTEGCAAAVVGGKLRGTVKSRRLEVTRAGRMEGTAFAETAEIAGTFEGSLTVTKALK 657
            +F+RRSSK+LSA+IGYD    K       S  S ST     ++APV++I   GG  H KQ S S  S  S + T  PSP    G  VD  +         PSPL++ K  LPP                   XXXXXXXXXXX        EPP+ SLVIGEGVLFEG TEGCAAAVVGGKL GTVKS+RLEVTRAG+MEGTA  E AEIAG FEG+LTVTKALK
Sbjct:    1 MFRRRSSKELSAKIGYDHVNGKASKNTSVSSMSSSTPAASNAVAPVASIPPPGGHLHHKQGSCSPGSSSSRKTTGMPSPEADSG--VDPSA------TERPSPLAALKP-LPPAEXXXXXXXXXXXXXX--XXXXXXXXXXXXXXXXXXVAEPPSNSLVIGEGVLFEGATEGCAAAVVGGKLVGTVKSKRLEVTRAGKMEGTAVVEMAEIAGAFEGNLTVTKALK 214
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig12555.5163.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KQ23_9PHAE2.690e-3653.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig12555contigM-pyrifera_M_contig12555:4369..5082 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size657
Cds size657
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815771.1103017-CDS-M-pyrifera_M_contig12555:4368..47031622815771.1103017-CDS-M-pyrifera_M_contig12555:4368..4703Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12555 4369..4703 -
1692277561.617662-CDS-M-pyrifera_M_contig12555:4368..47031692277561.617662-CDS-M-pyrifera_M_contig12555:4368..4703Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12555 4369..4703 -
1622815771.1216493-CDS-M-pyrifera_M_contig12555:4760..50821622815771.1216493-CDS-M-pyrifera_M_contig12555:4760..5082Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12555 4761..5082 -
1692277561.626766-CDS-M-pyrifera_M_contig12555:4760..50821692277561.626766-CDS-M-pyrifera_M_contig12555:4760..5082Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12555 4761..5082 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig12555.5163.1prot_M-pyrifera_M_contig12555.5163.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig12555 4369..5082 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig12555.5163.1

>prot_M-pyrifera_M_contig12555.5163.1 ID=prot_M-pyrifera_M_contig12555.5163.1|Name=mRNA_M-pyrifera_M_contig12555.5163.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=219bp
MSIFKRRSSKDLSARIGYDLNPKKYEGGIPTSGASPSTSMAPVSNITTGG
PSHQKQASSSSILSYRKTSAPSPHGMGGGGVDDISYGGTPLAAGPSPLSS
FKQSLPPTMSTKSLGQGPALCDAPPRRRSSSSSSSTSGSPSKQQIEPPAK
SLVIGEGVLFEGTTEGCAAAVVGGKLRGTVKSRRLEVTRAGRMEGTAFAE
TAEIAGTFEGSLTVTKALK
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mRNA from alignment at M-pyrifera_M_contig12555:4369..5082-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig12555.5163.1 ID=mRNA_M-pyrifera_M_contig12555.5163.1|Name=mRNA_M-pyrifera_M_contig12555.5163.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=714bp|location=Sequence derived from alignment at M-pyrifera_M_contig12555:4369..5082- (Macrocystis pyrifera P11B4 male)
ATGTCAATTTTCAAGCGAAGGTCCTCCAAGGATCTCTCGGCGAGAATCGG
ATACGACTTGAATCCGAAGAAGTACGAAGGGGGTATCCCGACATCGGGCG
CCTCTCCGTCCACCTCCATGGCTCCCGTCTCGAACATCACAACGGGTGGG
CCGAGCCACCAGAAGCAGGCTTCCTCGTCCTCCATCCTGTCGTACCGAAA
AACATCCGCCCCGTCTCCGCACGGGATGGGCGGCGGGGGTGTCGACGACA
TCAGCTACGGTGGCACGCCGCTCGCCGCGGGGCCATCCCCGCTCTCGTCG
TTCAAGCAATCTCTCCCGCCAAGTGGGGCAGCGGCGGCGGCGGCAGCAGC
TGCCACGGCATCTTTCTCGAACGGCACAGCGATGAGCACTAAGAGTCTCG
GCCAGGGCCCCGCGTTGTGTGACGCCCCACCGCGCAGGAGGTCCTCGTCG
TCGTCGTCCTCCACAAGCGGCTCCCCGTCGAAGCAACAGATTGAGCCCCC
GGCGAAGAGCCTGGTGATCGGGGAAGGGGTGCTGTTCGAGGGCACAACGG
AGGGCTGCGCCGCGGCCGTAGTCGGGGGCAAGCTGAGGGGCACGGTCAAG
TCCAGAAGGTTAGAGGTGACGCGGGCCGGGAGGATGGAGGGGACGGCCTT
CGCGGAGACGGCCGAGATCGCGGGTACCTTCGAGGGCTCGCTGACCGTCA
CCAAGGCGCTCAAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig12555:4369..5082-

>mRNA_M-pyrifera_M_contig12555.5163.1 ID=mRNA_M-pyrifera_M_contig12555.5163.1|Name=mRNA_M-pyrifera_M_contig12555.5163.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1314bp|location=Sequence derived from alignment at M-pyrifera_M_contig12555:4369..5082- (Macrocystis pyrifera P11B4 male)
ATGTCAATTTTCAAGCGAAGGTCCTCCAAGGATCTCTCGGCGAGAATCGG
ATACGACTTGAATCCGAAGAAGTACGAAGGGGGTATCCCGACATCGGGCG
CCTCTCCGTCCACCTCCATGGCTCCCGTCTCGAACATCACAACGGGTGGG
CCGAGCCACCAGAAGCAGGCTTCCTCGTCCTCCATCCTGTCGTACCGAAA
AACATCCGCCCCGTCTCCGCACGGGATGGGCGGCGGGGGTGTCGACGACA
TCAGCTACGGTGGCACGCCGCTCGCCGCGGGGCCATCCCCGCTCTCGTCG
TTCAAGCAATCTCTCCCGCCAAATGTCAATTTTCAAGCGAAGGTCCTCCA
AGGATCTCTCGGCGAGAATCGGATACGACTTGAATCCGAAGAAGTACGAA
GGGGGTATCCCGACATCGGGCGCCTCTCCGTCCACCTCCATGGCTCCCGT
CTCGAACATCACAACGGGTGGGCCGAGCCACCAGAAGCAGGCTTCCTCGT
CCTCCATCCTGTCGTACCGAAAAACATCCGCCCCGTCTCCGCACGGGATG
GGCGGCGGGGGTGTCGACGACATCAGCTACGGTGGCACGCCGCTCGCCGC
GGGGCCATCCCCGCTCTCGTCGTTCAAGCAATCTCTCCCGCCAACGATGA
GCACTAAGAGTCTCGGCCAGGGCCCCGCGTTGTGTGACGCCCCACCGCGC
AGGAGGTCCTCGTCGTCGTCGTCCTCCACAAGCGGCTCCCCGTCGAAGCA
ACAGATTGAGCCCCCGGCGAAGAGCCTGGTGATCGGGGAAGGGGTGCTGT
TCGAGGGCACAACGGAGGGCTGCGCCGCGGCCGTAGTCGGGGGCAAGCTG
AGGGGCACGGTCAAGTCCAGAAGGTTAGAGGTGACGCGGGCCGGGAGGAT
GGAGGGGACGGCCTTCGCGGAGACGGCCGAGATCGCGGGTACCTTCGAGG
GCTCGCTGACCGTCACCAAGGCGCTCAAGCGATGAGCACTAAGAGTCTCG
GCCAGGGCCCCGCGTTGTGTGACGCCCCACCGCGCAGGAGGTCCTCGTCG
TCGTCGTCCTCCACAAGCGGCTCCCCGTCGAAGCAACAGATTGAGCCCCC
GGCGAAGAGCCTGGTGATCGGGGAAGGGGTGCTGTTCGAGGGCACAACGG
AGGGCTGCGCCGCGGCCGTAGTCGGGGGCAAGCTGAGGGGCACGGTCAAG
TCCAGAAGGTTAGAGGTGACGCGGGCCGGGAGGATGGAGGGGACGGCCTT
CGCGGAGACGGCCGAGATCGCGGGTACCTTCGAGGGCTCGCTGACCGTCA
CCAAGGCGCTCAAG
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