mRNA_M-pyrifera_M_contig125542.5159.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig125542.5159.1
Unique NamemRNA_M-pyrifera_M_contig125542.5159.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig125542.5159.1 vs. uniprot
Match: A0A5A8BI61_9PLAN (Uncharacterized protein n=6 Tax=Gimesia TaxID=1649453 RepID=A0A5A8BI61_9PLAN)

HSP 1 Score: 124 bits (312), Expect = 1.070e-35
Identity = 59/59 (100.00%), Postives = 59/59 (100.00%), Query Frame = 1 
Query:    1 VAARYPRPQSRSAYRVPELATTPGFALRGARRWNYVRLYSGNSYDTTIFRSDTFNVVPP 177
            VAARYPRPQSRSAYRVPELATTPGFALRGARRWNYVRLYSGNSYDTTIFRSDTFNVVPP
Sbjct:   56 VAARYPRPQSRSAYRVPELATTPGFALRGARRWNYVRLYSGNSYDTTIFRSDTFNVVPP 114
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BLAST of mRNA_M-pyrifera_M_contig125542.5159.1 vs. uniprot
Match: A0A517QBU6_9PLAN (Uncharacterized protein n=3 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A517QBU6_9PLAN)

HSP 1 Score: 120 bits (301), Expect = 5.050e-34
Identity = 56/59 (94.92%), Postives = 58/59 (98.31%), Query Frame = 1 
Query:    1 VAARYPRPQSRSAYRVPELATTPGFALRGARRWNYVRLYSGNSYDTTIFRSDTFNVVPP 177
            VAARYPRPQSRSAYRVPELATTPGFA+RGARRWNYVRLY+GNSYDTTI RSDTFNVVPP
Sbjct:   56 VAARYPRPQSRSAYRVPELATTPGFAIRGARRWNYVRLYAGNSYDTTILRSDTFNVVPP 114
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BLAST of mRNA_M-pyrifera_M_contig125542.5159.1 vs. uniprot
Match: A0A517VIS5_9PLAN (Uncharacterized protein n=1 Tax=Gimesia algae TaxID=2527971 RepID=A0A517VIS5_9PLAN)

HSP 1 Score: 117 bits (294), Expect = 5.720e-33
Identity = 55/59 (93.22%), Postives = 57/59 (96.61%), Query Frame = 1 
Query:    1 VAARYPRPQSRSAYRVPELATTPGFALRGARRWNYVRLYSGNSYDTTIFRSDTFNVVPP 177
            VAARYPRP+SRSAYR PELATTPGFALRGARRWNYVRLYSGNSYDTTI+RSDTFNVV P
Sbjct:   55 VAARYPRPESRSAYRTPELATTPGFALRGARRWNYVRLYSGNSYDTTIYRSDTFNVVAP 113
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BLAST of mRNA_M-pyrifera_M_contig125542.5159.1 vs. uniprot
Match: A0A355GD74_9PLAN (Uncharacterized protein n=2 Tax=Planctomycetaceae TaxID=126 RepID=A0A355GD74_9PLAN)

HSP 1 Score: 116 bits (290), Expect = 1.410e-32
Identity = 54/59 (91.53%), Postives = 57/59 (96.61%), Query Frame = 1 
Query:    1 VAARYPRPQSRSAYRVPELATTPGFALRGARRWNYVRLYSGNSYDTTIFRSDTFNVVPP 177
            VAA+YPRP+SRSAYR PELATTPGFALRGARRWNYVRLYSGNSYDTTI+RSDTFNVV P
Sbjct:   38 VAAQYPRPESRSAYRTPELATTPGFALRGARRWNYVRLYSGNSYDTTIYRSDTFNVVAP 96
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BLAST of mRNA_M-pyrifera_M_contig125542.5159.1 vs. uniprot
Match: A6C541_9PLAN (Uncharacterized protein n=4 Tax=Gimesia TaxID=1649453 RepID=A6C541_9PLAN)

HSP 1 Score: 117 bits (294), Expect = 1.410e-32
Identity = 55/59 (93.22%), Postives = 57/59 (96.61%), Query Frame = 1 
Query:    1 VAARYPRPQSRSAYRVPELATTPGFALRGARRWNYVRLYSGNSYDTTIFRSDTFNVVPP 177
            VAARYPRP+SRSAYR PELATTPGFALRGARRWNYVRLYSGNSYDTTI+RSDTFNVV P
Sbjct:   86 VAARYPRPESRSAYRTPELATTPGFALRGARRWNYVRLYSGNSYDTTIYRSDTFNVVAP 144
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BLAST of mRNA_M-pyrifera_M_contig125542.5159.1 vs. uniprot
Match: A0A518IHG0_9PLAN (Uncharacterized protein n=2 Tax=Gimesia TaxID=1649453 RepID=A0A518IHG0_9PLAN)

HSP 1 Score: 109 bits (273), Expect = 9.030e-30
Identity = 50/59 (84.75%), Postives = 57/59 (96.61%), Query Frame = 1 
Query:    1 VAARYPRPQSRSAYRVPELATTPGFALRGARRWNYVRLYSGNSYDTTIFRSDTFNVVPP 177
            VAARYPRP+SRSAYR+P+LATTPGFAL+GARRWNYVRLY+G+SYDTTI RSDTF+VV P
Sbjct:   55 VAARYPRPESRSAYRLPQLATTPGFALKGARRWNYVRLYNGSSYDTTILRSDTFDVVSP 113
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BLAST of mRNA_M-pyrifera_M_contig125542.5159.1 vs. uniprot
Match: A0A517VT48_9PLAN (Uncharacterized protein n=4 Tax=Gimesia aquarii TaxID=2527964 RepID=A0A517VT48_9PLAN)

HSP 1 Score: 105 bits (263), Expect = 3.010e-28
Identity = 47/59 (79.66%), Postives = 55/59 (93.22%), Query Frame = 1 
Query:    1 VAARYPRPQSRSAYRVPELATTPGFALRGARRWNYVRLYSGNSYDTTIFRSDTFNVVPP 177
            VA RYPRPQSRSAYR+PELATTPGFA++GARRWNYVR+++GN +DTTI RSDTF+VV P
Sbjct:   55 VAERYPRPQSRSAYRLPELATTPGFAIKGARRWNYVRMFNGNGFDTTILRSDTFDVVSP 113
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig125542.5159.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A5A8BI61_9PLAN1.070e-35100.00Uncharacterized protein n=6 Tax=Gimesia TaxID=1649... [more]
A0A517QBU6_9PLAN5.050e-3494.92Uncharacterized protein n=3 Tax=Gimesia panareensi... [more]
A0A517VIS5_9PLAN5.720e-3393.22Uncharacterized protein n=1 Tax=Gimesia algae TaxI... [more]
A0A355GD74_9PLAN1.410e-3291.53Uncharacterized protein n=2 Tax=Planctomycetaceae ... [more]
A6C541_9PLAN1.410e-3293.22Uncharacterized protein n=4 Tax=Gimesia TaxID=1649... [more]
A0A518IHG0_9PLAN9.030e-3084.75Uncharacterized protein n=2 Tax=Gimesia TaxID=1649... [more]
A0A517VT48_9PLAN3.010e-2879.66Uncharacterized protein n=4 Tax=Gimesia aquarii Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig125542contigM-pyrifera_M_contig125542:2..181 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size180
Cds size180
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815770.961807-CDS-M-pyrifera_M_contig125542:1..1811622815770.961807-CDS-M-pyrifera_M_contig125542:1..181Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig125542 2..181 +
1692277561.5654213-CDS-M-pyrifera_M_contig125542:1..1811692277561.5654213-CDS-M-pyrifera_M_contig125542:1..181Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig125542 2..181 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig125542.5159.1prot_M-pyrifera_M_contig125542.5159.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig125542 2..181 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig125542.5159.1

>prot_M-pyrifera_M_contig125542.5159.1 ID=prot_M-pyrifera_M_contig125542.5159.1|Name=mRNA_M-pyrifera_M_contig125542.5159.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=60bp
VAARYPRPQSRSAYRVPELATTPGFALRGARRWNYVRLYSGNSYDTTIFR
SDTFNVVPP*
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mRNA from alignment at M-pyrifera_M_contig125542:2..181+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig125542.5159.1 ID=mRNA_M-pyrifera_M_contig125542.5159.1|Name=mRNA_M-pyrifera_M_contig125542.5159.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=180bp|location=Sequence derived from alignment at M-pyrifera_M_contig125542:2..181+ (Macrocystis pyrifera P11B4 male)
GTCGCTGCCCGTTATCCACGACCTCAGAGCCGCTCTGCCTATCGTGTACC
AGAACTCGCTACCACACCCGGGTTTGCACTACGGGGCGCACGTCGCTGGA
ACTATGTGCGACTTTACAGCGGGAACAGCTACGATACGACAATCTTTCGT
AGTGATACCTTTAATGTCGTCCCTCCCTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig125542:2..181+

>mRNA_M-pyrifera_M_contig125542.5159.1 ID=mRNA_M-pyrifera_M_contig125542.5159.1|Name=mRNA_M-pyrifera_M_contig125542.5159.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=360bp|location=Sequence derived from alignment at M-pyrifera_M_contig125542:2..181+ (Macrocystis pyrifera P11B4 male)
GTCGCTGCCCGTTATCCACGACCTCAGAGCCGCTCTGCCTATCGTGTACC
AGAACTCGCTACCACACCCGGGTTTGCACTACGGGGCGCACGTCGCTGGA
ACTATGTGCGACTTTACAGCGGGAACAGCTACGATACGACAATCTTTCGT
AGTGATACCTTTAATGTCGTCCCTCCCTAAGTCGCTGCCCGTTATCCACG
ACCTCAGAGCCGCTCTGCCTATCGTGTACCAGAACTCGCTACCACACCCG
GGTTTGCACTACGGGGCGCACGTCGCTGGAACTATGTGCGACTTTACAGC
GGGAACAGCTACGATACGACAATCTTTCGTAGTGATACCTTTAATGTCGT
CCCTCCCTAA
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