mRNA_M-pyrifera_M_contig125528.5155.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig125528.5155.1
Unique NamemRNA_M-pyrifera_M_contig125528.5155.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig125528.5155.1 vs. uniprot
Match: A0A150H4W5_GONPE (Uncharacterized protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150H4W5_GONPE)

HSP 1 Score: 67.8 bits (164), Expect = 3.490e-10
Identity = 57/172 (33.14%), Postives = 85/172 (49.42%), Query Frame = 1
Query:    1 YLFGGLREWDGGSAVSKV---TMRYDPVFDEVNASLAQMPGPRYRFGVSCVHDRFCVLAGGYEEEGGD--PVDTVVVYDVEQDVFVEGPSLSIARGDVASAAVDDAVYVIGGYGVGFDMSESGRLVERLEIGEDGAMGA--WEEV---ARMPTSRGDCVASAFGDHIYVVGG 486
            YL GG+ + +G +  +KV    +RYD     +   +  +P  RYRF  + + +   V+ GG      D  P+ TV++YD+ ++ +     L+  R D   AA+++ VYV GGY   F    S    E L+     A  A  W+ +   A + TSRGDC A A  D IY VGG
Sbjct:  128 YLIGGVSD-EGVNGTAKVLTSVVRYDTETGFME-EMEPLPDARYRFAYAKLGNYIYVI-GGTNSSANDAGPLATVMMYDINRNRWSYSGKLNTPRIDPCGAAINNKVYVFGGYDETFASLAS---TEELDPATATATAAPLWKLLPGSANLTTSRGDCRAVAVDDKIYAVGG 293          
BLAST of mRNA_M-pyrifera_M_contig125528.5155.1 vs. uniprot
Match: A0A5N6K217_MONLA (Uncharacterized protein n=2 Tax=Monilinia laxa TaxID=61186 RepID=A0A5N6K217_MONLA)

HSP 1 Score: 64.7 bits (156), Expect = 3.970e-9
Identity = 55/169 (32.54%), Postives = 79/169 (46.75%), Query Frame = 1
Query:    1 YLFGGLREWDGGSAVSKVTMRYDPVFDEVNA------SLAQMPGPRYRFGVSCVHDRFCV-LAGGYEEEGGDPVDTVVVYDVEQDVFVEGPSLSIARGDVASAAVDDAVYVIGGYGVGFDMSESGRLVERLEIGEDGAMGAWEEVARMPTSRGDCVASAFGDHIYVVGG 486
            YL GGL   D    +S+ +     +F   NA      SL  MP PR   GV  + D   + + GG      + VDT  V++     + E  +L  ARG VASA ++++++VIGG G   + + +   V     G D A   W+E A M   R    A A G+ IY+ GG
Sbjct:  252 YLAGGLTSVD----ISQSSQPTVALFTAWNAGRQIFTSLPVMPAPRDHAGVGFLLDPGALYVLGGRAFGHNNVVDTTFVFEFRTGEWKEVANLPTARGGVASAMINNSIFVIGGEG---NPAPNSNGVFSQNEGYDTATDTWKEYAPMDVPRHGTSAVAIGNRIYIPGG 413          
BLAST of mRNA_M-pyrifera_M_contig125528.5155.1 vs. uniprot
Match: A0A395J8C7_9HELO (Uncharacterized protein n=1 Tax=Monilinia fructigena TaxID=38457 RepID=A0A395J8C7_9HELO)

HSP 1 Score: 57.8 bits (138), Expect = 1.780e-7
Identity = 45/137 (32.85%), Postives = 66/137 (48.18%), Query Frame = 1
Query:   79 DEVNASLAQMPGPRYRFGVSCVHDRFCVLAGGYEEEGGDPV-DTVVVYDVEQDVFVEGPSLSIARGDVASAAVDDAVYVIGGYGVGFDMSESGRLVERLEIGEDGAMGAWEEVARMPTSRGDCVASAFGDHIYVVGG 486
            ++   SL  MP PR   GV  + D   +   G    G D V DT  V++     + E  SL  ARG +ASA ++++++VIGG G    ++ +G   +      D A   W+E A M   R    A A G+ IY+ GG
Sbjct:    4 EQTFTSLPVMPAPRDHAGVGFLLDPGVLYVLGGRAFGTDNVVDTTFVFEFRTGEWKEVASLPTARGGLASATINNSIFVIGGEGNPAPIA-TGCFSQNEAY--DTATDTWKEYASMDVPRHGTSAVAIGNRIYIPGG 137          
BLAST of mRNA_M-pyrifera_M_contig125528.5155.1 vs. uniprot
Match: A0A2D5E588_9BACT (Uncharacterized protein n=1 Tax=Phycisphaerae bacterium TaxID=2026778 RepID=A0A2D5E588_9BACT)

HSP 1 Score: 57.4 bits (137), Expect = 1.220e-6
Identity = 48/163 (29.45%), Postives = 65/163 (39.88%), Query Frame = 1
Query:    1 YLFGGLREWDGGSAVSKVTMRYDPVFDEVNASLAQMPGPRYRFGVSCVHDRFCVLAGGYE-EEGGDPVDTVVVYDVEQDVFVEGPSLSIARGDVASAAVDDAVYVIGGYGVGFDMSESGRLVERLEIGEDGAMGAWEEVARMPTSRGDCVASAFGDHIYVVGG 486
            Y+ GG  E +   + +    RYDP  D     LA  P        + V DR   LAGGY  +  G  +     YDVE+DV+ EGP L   R     A +D  ++  GG       +     V  L  GE      WE    +P +R     +     IY +GG
Sbjct:   32 YVVGGHLEPE--LSATAAMYRYDPAKDSWKR-LADAPREISHVTATVVGDRHLWLAGGYVGQHPGTGIAESYRYDVERDVWEEGPPLPAVRASGGLAGIDGRLHYFGGLDADRCTNRDDHWVLDLAAGE-----GWETARPVPLARTXAATAIHXGGIYAIGG 186          
BLAST of mRNA_M-pyrifera_M_contig125528.5155.1 vs. uniprot
Match: K8F2I0_9CHLO (Uncharacterized protein n=1 Tax=Bathycoccus prasinos TaxID=41875 RepID=K8F2I0_9CHLO)

HSP 1 Score: 57.0 bits (136), Expect = 1.850e-6
Identity = 49/187 (26.20%), Postives = 86/187 (45.99%), Query Frame = 1
Query:    1 YLFGGLREWDGGSAVSKVTMRYDPVFDEVNASLAQMPGPRYRFGVSCV-----HDRFCVLAG----------GYEEEGGDPVDTV--VVYDVEQDVFVEGPSL----SIARGDVASAAVDDAVYVIGGYGVGFDMSESGRLVERLEIGEDGAMGA-WEEVARMPTSRGDCVASAFGDHIYVVGGWNE 495
            Y+FGG    D         +RYD + D  + S+  MP  R R+  + +      +   +L G          GY+E+     D V  +VY+V+ D +          S+ +   A+   ++A+Y++GGYGV + +  S   V +L     G + + W + + +P  RGD   +A  + IY+ GGW++
Sbjct:  122 YIFGGK---DASGTYLNTVLRYDSINDSYD-SMKNMPEARARYAAAVMKNDLNQNEVWILGGISAVTPGVDGGYDED----TDKVCPMVYNVDTDTWRTETGTRCLPSVVKDACAATGSNNAIYLMGGYGVDYSVLNS---VYKLA----GPLSSEWVKTSDLPDPRGDVSCAALKNSIYLAGGWHD 293          
BLAST of mRNA_M-pyrifera_M_contig125528.5155.1 vs. uniprot
Match: C3XS38_BRAFL (BTB domain-containing protein n=2 Tax=Branchiostoma floridae TaxID=7739 RepID=C3XS38_BRAFL)

HSP 1 Score: 56.2 bits (134), Expect = 3.640e-6
Identity = 36/96 (37.50%), Postives = 50/96 (52.08%), Query Frame = 1
Query:  199 VDTVVVYDVEQDVFVEGPSLSIARGDVASAAVDDAVYVIGGYGVGFDMS-ESGRLVERLEIGEDGAMGAWEEVARMPTSRGDCVASAFGDHIYVVG 483
            V +V VYD  Q+ + EG  L   R   A A +D+A+YV+GG+G   D S ES   V R   G+      W+ +  MP + G   A+A   HIY+ G
Sbjct:  395 VSSVEVYDRRQNKWTEGVPLPQPRSCHAVAVLDNAIYVMGGWGKEHDESNESTSTVYRFSPGDS----QWQSMKDMPEAAGYVTATALNGHIYLAG 486          
BLAST of mRNA_M-pyrifera_M_contig125528.5155.1 vs. uniprot
Match: A0A6J2WH94_CHACN (kelch-like protein 23 n=1 Tax=Chanos chanos TaxID=29144 RepID=A0A6J2WH94_CHACN)

HSP 1 Score: 55.5 bits (132), Expect = 6.680e-6
Identity = 41/141 (29.08%), Postives = 64/141 (45.39%), Query Frame = 1
Query:   64 YDPVFDEVNASLAQMPGPRYRFGVSCVHDRFCVLAGGYEEEGGDPVDTVVVYDVEQDVFVEGPSLSIARGDVASAAVDDAVYVIGGYGVGFDMSESGRLVERLEIGEDGAMGAWEEVARMPTSRGDCVASAFGDHIYVVGG 486
            +DPV D            R  + VS +     V  GGY+ +  + +DTV +Y+ +QD + EG  +  AR    S A++  +YVIGGY  G    E+    + L+         W  +A +    G+  A    D IY++GG
Sbjct:  296 WDPVSDTWTQGKDMPDYARESYSVSLLGPNVYVT-GGYKSQTVEALDTVWIYNTDQDEWTEGCPMLTARYYHCSVALNGCIYVIGGYRGGAPARET-EFYDPLKE-------EWFPIADLIQGVGNATACVLNDKIYLIGG 427          
BLAST of mRNA_M-pyrifera_M_contig125528.5155.1 vs. uniprot
Match: A0A6L5F299_9ACTN (S8 family serine peptidase n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A6L5F299_9ACTN)

HSP 1 Score: 55.1 bits (131), Expect = 1.050e-5
Identity = 49/158 (31.01%), Postives = 72/158 (45.57%), Query Frame = 1
Query:   64 YDPVFDEVNA----------SLAQMPGPRYRFGVSCVHDRFCVLAGGYEEEGGDPVDTVVVY--DVEQDVFVEGPSLSIARGDVASAAVDDAVYVIGGYGVGFDMSESGRLVERLEIGEDGAMGAWEEVARMPTSRGD-----CVASAFGDHIYVVGG 486
            + P  DEVN           + A +P      GV+ V  R+  + GG+   G   + +   Y  D+E   +  GP L+ ARG++A AA D A+Y IGG   G   +    +VERL+I      G+WE +  +P +RG      C     G  I+ V G
Sbjct:  992 FGPPSDEVNVYDIPTNTWLDNAAPIPTATGVPGVAQV-GRYVYVVGGWVTPGTSGLHSPHTYRLDLETGEWTTGPDLNQARGEIAVAATDTALYAIGGGLPGTAPNAGSTVVERLDI-SGWPNGSWEALDPLPEARGVGRGGFCTELRPGQEIWSVAG 1147          
BLAST of mRNA_M-pyrifera_M_contig125528.5155.1 vs. uniprot
Match: G7YJI8_CLOSI (Kelch-like protein 1/4/5 n=1 Tax=Clonorchis sinensis TaxID=79923 RepID=G7YJI8_CLOSI)

HSP 1 Score: 53.1 bits (126), Expect = 4.360e-5
Identity = 39/134 (29.10%), Postives = 56/134 (41.79%), Query Frame = 1
Query:   94 SLAQMPGPRYRFGVSCVHDRFCVLAGGYEEEGGDPVDTVVVYDVEQDVFVEGPSLSIARGDVASAAVDDAVYVIGGYGVGFDMSESGRLVERLEIGEDGAMGAWEEVARMPTSRGDCVASAFGDHIYVVGGWNE 495
            SL  MP PR  FG     +   V+ G    +    + TV VYD E D +  GP L + R     A  +  +Y  GG       S +G  +   E+  D   GAW+ + + P  R     +  G   ++VGG  E
Sbjct:  424 SLKNMPCPRKGFGALVFRNNLFVIGG----KSSGSMQTVDVYDAENDRWFTGPPLLVGRSWHGVAECNGNIYAFGG------CSAAGEALSHCEM-LDTRTGAWQAIPQSPHRRMSHGVAGSGTQAFLVGGLGE 546          
BLAST of mRNA_M-pyrifera_M_contig125528.5155.1 vs. uniprot
Match: A0A8A3PPM9_9HELO (Uncharacterized protein n=1 Tax=Monilinia vaccinii-corymbosi TaxID=61207 RepID=A0A8A3PPM9_9HELO)

HSP 1 Score: 52.4 bits (124), Expect = 6.680e-5
Identity = 49/172 (28.49%), Postives = 70/172 (40.70%), Query Frame = 1
Query:    1 YLFGGLREWDGGSAVSKVTMRYDPVFD---------EVNASLAQMPGPRYRFGVSCVHDRFCVLAGGYEEEGGDPV-DTVVVYDVEQDVFVEGPSLSIARGDVASAAVDDAVYVIGGYGVGFDMSESGRLVERLEIGEDGAMGAWEEVARMPTSRGDCVASAFGDHIYVVGG 486
            YL GGL+  D       ++  + P  D         +V   L  +P PR   GV  V     +   G    G D V +T  ++  +   + E   +  ARG VASA +D+ ++V+GG G   +   +   V       D     W E A M   R    A A G+ IYV GG
Sbjct:  174 YLAGGLKWLD-------LSQSFQPTVDLFTAWNVGTQVFKPLPVLPAPRDHAGVGWVASTGALYVLGGRAFGHDNVVNTTFLFSFQTLTWREVAKMPTARGGVASAMIDNLIFVMGGEG---NPDPNSHGVFSQNEAYDTNTDTWREYAEMDVPRHGTSAVAIGNMIYVPGG 335          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig125528.5155.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A150H4W5_GONPE3.490e-1033.14Uncharacterized protein n=1 Tax=Gonium pectorale T... [more]
A0A5N6K217_MONLA3.970e-932.54Uncharacterized protein n=2 Tax=Monilinia laxa Tax... [more]
A0A395J8C7_9HELO1.780e-732.85Uncharacterized protein n=1 Tax=Monilinia fructige... [more]
A0A2D5E588_9BACT1.220e-629.45Uncharacterized protein n=1 Tax=Phycisphaerae bact... [more]
K8F2I0_9CHLO1.850e-626.20Uncharacterized protein n=1 Tax=Bathycoccus prasin... [more]
C3XS38_BRAFL3.640e-637.50BTB domain-containing protein n=2 Tax=Branchiostom... [more]
A0A6J2WH94_CHACN6.680e-629.08kelch-like protein 23 n=1 Tax=Chanos chanos TaxID=... [more]
A0A6L5F299_9ACTN1.050e-531.01S8 family serine peptidase n=1 Tax=Acidimicrobiia ... [more]
G7YJI8_CLOSI4.360e-529.10Kelch-like protein 1/4/5 n=1 Tax=Clonorchis sinens... [more]
A0A8A3PPM9_9HELO6.680e-528.49Uncharacterized protein n=1 Tax=Monilinia vaccinii... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig125528contigM-pyrifera_M_contig125528:3..503 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score107.8
Seed ortholog evalue4.8e-21
Seed eggNOG ortholog227086.JGI_V11_91212
KEGG koko:K10442,ko:K10443,ko:K10447
KEGG Pathwayko04120,map04120
Hectar predicted targeting categoryother localisation
EggNOG free text desc.protein ubiquitination
EggNOG OGsKOG4441@1,KOG4441@2759
COG Functional cat.KLT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04121
Exons1
Model size501
Cds size501
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815770.8127692-CDS-M-pyrifera_M_contig125528:2..5031622815770.8127692-CDS-M-pyrifera_M_contig125528:2..503Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig125528 3..503 +
1692277561.5215392-CDS-M-pyrifera_M_contig125528:2..5031692277561.5215392-CDS-M-pyrifera_M_contig125528:2..503Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig125528 3..503 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig125528.5155.1prot_M-pyrifera_M_contig125528.5155.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig125528 3..503 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig125528.5155.1

>prot_M-pyrifera_M_contig125528.5155.1 ID=prot_M-pyrifera_M_contig125528.5155.1|Name=mRNA_M-pyrifera_M_contig125528.5155.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=167bp
YLFGGLREWDGGSAVSKVTMRYDPVFDEVNASLAQMPGPRYRFGVSCVHD
RFCVLAGGYEEEGGDPVDTVVVYDVEQDVFVEGPSLSIARGDVASAAVDD
AVYVIGGYGVGFDMSESGRLVERLEIGEDGAMGAWEEVARMPTSRGDCVA
SAFGDHIYVVGGWNEED
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mRNA from alignment at M-pyrifera_M_contig125528:3..503+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig125528.5155.1 ID=mRNA_M-pyrifera_M_contig125528.5155.1|Name=mRNA_M-pyrifera_M_contig125528.5155.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=501bp|location=Sequence derived from alignment at M-pyrifera_M_contig125528:3..503+ (Macrocystis pyrifera P11B4 male)
TATTTGTTCGGCGGGCTTCGCGAGTGGGATGGCGGGAGCGCGGTGAGCAA AGTGACCATGCGATACGACCCCGTTTTTGACGAGGTGAACGCTTCGTTGG CGCAAATGCCTGGACCACGGTATCGGTTCGGGGTGAGTTGTGTGCACGAT CGATTTTGCGTGCTTGCGGGCGGGTATGAGGAGGAAGGAGGTGACCCTGT GGACACAGTGGTGGTGTACGATGTGGAGCAGGACGTGTTCGTGGAAGGGC CTTCGCTGTCCATTGCCAGAGGTGATGTGGCGAGTGCTGCCGTGGATGAT GCTGTGTATGTGATTGGTGGGTATGGCGTCGGGTTTGATATGAGCGAGAG TGGGCGGTTGGTGGAGCGATTGGAGATTGGGGAGGATGGGGCAATGGGGG CGTGGGAGGAGGTGGCAAGGATGCCCACGAGTCGAGGTGACTGTGTGGCG AGTGCGTTTGGGGACCACATTTACGTGGTGGGTGGATGGAACGAGGAAGA T
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig125528:3..503+

>mRNA_M-pyrifera_M_contig125528.5155.1 ID=mRNA_M-pyrifera_M_contig125528.5155.1|Name=mRNA_M-pyrifera_M_contig125528.5155.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1002bp|location=Sequence derived from alignment at M-pyrifera_M_contig125528:3..503+ (Macrocystis pyrifera P11B4 male)
TATTTGTTCGGCGGGCTTCGCGAGTGGGATGGCGGGAGCGCGGTGAGCAA
AGTGACCATGCGATACGACCCCGTTTTTGACGAGGTGAACGCTTCGTTGG
CGCAAATGCCTGGACCACGGTATCGGTTCGGGGTGAGTTGTGTGCACGAT
CGATTTTGCGTGCTTGCGGGCGGGTATGAGGAGGAAGGAGGTGACCCTGT
GGACACAGTGGTGGTGTACGATGTGGAGCAGGACGTGTTCGTGGAAGGGC
CTTCGCTGTCCATTGCCAGAGGTGATGTGGCGAGTGCTGCCGTGGATGAT
GCTGTGTATGTGATTGGTGGGTATGGCGTCGGGTTTGATATGAGCGAGAG
TGGGCGGTTGGTGGAGCGATTGGAGATTGGGGAGGATGGGGCAATGGGGG
CGTGGGAGGAGGTGGCAAGGATGCCCACGAGTCGAGGTGACTGTGTGGCG
AGTGCGTTTGGGGACCACATTTACGTGGTGGGTGGATGGAACGAGGAAGA
TTATTTGTTCGGCGGGCTTCGCGAGTGGGATGGCGGGAGCGCGGTGAGCA
AAGTGACCATGCGATACGACCCCGTTTTTGACGAGGTGAACGCTTCGTTG
GCGCAAATGCCTGGACCACGGTATCGGTTCGGGGTGAGTTGTGTGCACGA
TCGATTTTGCGTGCTTGCGGGCGGGTATGAGGAGGAAGGAGGTGACCCTG
TGGACACAGTGGTGGTGTACGATGTGGAGCAGGACGTGTTCGTGGAAGGG
CCTTCGCTGTCCATTGCCAGAGGTGATGTGGCGAGTGCTGCCGTGGATGA
TGCTGTGTATGTGATTGGTGGGTATGGCGTCGGGTTTGATATGAGCGAGA
GTGGGCGGTTGGTGGAGCGATTGGAGATTGGGGAGGATGGGGCAATGGGG
GCGTGGGAGGAGGTGGCAAGGATGCCCACGAGTCGAGGTGACTGTGTGGC
GAGTGCGTTTGGGGACCACATTTACGTGGTGGGTGGATGGAACGAGGAAG
AT
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