mRNA_M-pyrifera_M_contig125519.5151.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig125519.5151.1
Unique NamemRNA_M-pyrifera_M_contig125519.5151.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig125519.5151.1 vs. uniprot
Match: A0A1V5FXR3_9BACT (Uncharacterized protein n=1 Tax=candidate division BRC1 bacterium ADurb.BinA364 TaxID=1852825 RepID=A0A1V5FXR3_9BACT)

HSP 1 Score: 56.2 bits (134), Expect = 1.920e-6
Identity = 41/103 (39.81%), Postives = 60/103 (58.25%), Query Frame = 1 
Query:  109 DWRGDLSDAIALLPRDSEARPALEQMGMDLGRLQREY-DNNQQLPDITEFQQVVQRPLRTAIESLEREIVR-TGDEDSRLEDEGAIPEQYVDRVAEYFRLLAE 411
            +W G L DA ALLP  +EAR  L ++  +L R++R+  +     P     Q++V  PL TA   LER+I   +G +   L  E  +P++Y +RVAEY+R LAE
Sbjct:  461 EWSGALRDAQALLPSGAEARDRLARIEDELNRMRRQAREEGDGGPRFDLLQELVGYPLGTAAAWLERKIEEESGRQAFALTGEEDVPDRYRERVAEYYRQLAE 563
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig125519.5151.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A1V5FXR3_9BACT1.920e-639.81Uncharacterized protein n=1 Tax=candidate division... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig125519contigM-pyrifera_M_contig125519:3..431 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size429
Cds size429
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815770.6169724-CDS-M-pyrifera_M_contig125519:2..4311622815770.6169724-CDS-M-pyrifera_M_contig125519:2..431Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig125519 3..431 +
1692277561.3969195-CDS-M-pyrifera_M_contig125519:2..4311692277561.3969195-CDS-M-pyrifera_M_contig125519:2..431Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig125519 3..431 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig125519.5151.1prot_M-pyrifera_M_contig125519.5151.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig125519 3..431 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig125519.5151.1

>prot_M-pyrifera_M_contig125519.5151.1 ID=prot_M-pyrifera_M_contig125519.5151.1|Name=mRNA_M-pyrifera_M_contig125519.5151.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=143bp
SPRGEASGGSSGGDPQGSPGGRGISDGDVRRFLDEGDWRGDLSDAIALLP
RDSEARPALEQMGMDLGRLQREYDNNQQLPDITEFQQVVQRPLRTAIESL
EREIVRTGDEDSRLEDEGAIPEQYVDRVAEYFRLLAEGVEVP*
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mRNA from alignment at M-pyrifera_M_contig125519:3..431+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig125519.5151.1 ID=mRNA_M-pyrifera_M_contig125519.5151.1|Name=mRNA_M-pyrifera_M_contig125519.5151.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=429bp|location=Sequence derived from alignment at M-pyrifera_M_contig125519:3..431+ (Macrocystis pyrifera P11B4 male)
TCTCCACGTGGTGAGGCGTCGGGAGGTAGTTCAGGCGGCGACCCGCAAGG
GAGCCCCGGGGGACGGGGTATCTCCGACGGGGATGTGCGACGCTTTCTCG
ATGAGGGTGATTGGCGTGGTGACTTGTCCGATGCGATTGCCCTACTGCCC
CGTGATTCGGAAGCACGGCCTGCCTTGGAGCAGATGGGTATGGATCTCGG
GCGTTTGCAGCGGGAGTACGACAACAATCAGCAACTACCTGACATCACCG
AATTTCAGCAGGTCGTACAGCGACCACTGCGCACCGCGATTGAATCGTTG
GAGCGCGAGATCGTCCGCACGGGCGATGAAGATAGCCGTTTGGAAGATGA
AGGCGCGATTCCCGAGCAGTATGTGGATCGTGTGGCCGAGTACTTCCGTC
TATTGGCGGAAGGGGTGGAGGTGCCATAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig125519:3..431+

>mRNA_M-pyrifera_M_contig125519.5151.1 ID=mRNA_M-pyrifera_M_contig125519.5151.1|Name=mRNA_M-pyrifera_M_contig125519.5151.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=858bp|location=Sequence derived from alignment at M-pyrifera_M_contig125519:3..431+ (Macrocystis pyrifera P11B4 male)
TCTCCACGTGGTGAGGCGTCGGGAGGTAGTTCAGGCGGCGACCCGCAAGG
GAGCCCCGGGGGACGGGGTATCTCCGACGGGGATGTGCGACGCTTTCTCG
ATGAGGGTGATTGGCGTGGTGACTTGTCCGATGCGATTGCCCTACTGCCC
CGTGATTCGGAAGCACGGCCTGCCTTGGAGCAGATGGGTATGGATCTCGG
GCGTTTGCAGCGGGAGTACGACAACAATCAGCAACTACCTGACATCACCG
AATTTCAGCAGGTCGTACAGCGACCACTGCGCACCGCGATTGAATCGTTG
GAGCGCGAGATCGTCCGCACGGGCGATGAAGATAGCCGTTTGGAAGATGA
AGGCGCGATTCCCGAGCAGTATGTGGATCGTGTGGCCGAGTACTTCCGTC
TATTGGCGGAAGGGGTGGAGGTGCCATAGTCTCCACGTGGTGAGGCGTCG
GGAGGTAGTTCAGGCGGCGACCCGCAAGGGAGCCCCGGGGGACGGGGTAT
CTCCGACGGGGATGTGCGACGCTTTCTCGATGAGGGTGATTGGCGTGGTG
ACTTGTCCGATGCGATTGCCCTACTGCCCCGTGATTCGGAAGCACGGCCT
GCCTTGGAGCAGATGGGTATGGATCTCGGGCGTTTGCAGCGGGAGTACGA
CAACAATCAGCAACTACCTGACATCACCGAATTTCAGCAGGTCGTACAGC
GACCACTGCGCACCGCGATTGAATCGTTGGAGCGCGAGATCGTCCGCACG
GGCGATGAAGATAGCCGTTTGGAAGATGAAGGCGCGATTCCCGAGCAGTA
TGTGGATCGTGTGGCCGAGTACTTCCGTCTATTGGCGGAAGGGGTGGAGG
TGCCATAG
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