mRNA_M-pyrifera_M_contig12547.5139.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig12547.5139.1
Unique NamemRNA_M-pyrifera_M_contig12547.5139.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig12547.5139.1 vs. uniprot
Match: D7FPB9_ECTSI (Bifunctional lysine-specific demethylase and histidyl-hydroxylase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPB9_ECTSI)

HSP 1 Score: 94.4 bits (233), Expect = 6.380e-21
Identity = 44/54 (81.48%), Postives = 49/54 (90.74%), Query Frame = 1 
Query:    1 SPLQFELDDAPAIEALLSAYPHPVAVSDLPHPPAEDLQDKVGVAAALYKEGFLL 162
            SPLQFELDDAPA+E LLSAYP PV VSDLPHPP EDL+DKVG+AAAL+KE F+L
Sbjct:  581 SPLQFELDDAPALEVLLSAYPRPVTVSDLPHPPTEDLEDKVGIAAALFKESFML 634
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BLAST of mRNA_M-pyrifera_M_contig12547.5139.1 vs. uniprot
Match: A0A7S2UXW1_9STRA (Hypothetical protein (Fragment) n=2 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UXW1_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 5.840e-16
Identity = 34/53 (64.15%), Postives = 43/53 (81.13%), Query Frame = 1 
Query:    4 PLQFELDDAPAIEALLSAYPHPVAVSDLPHPPAEDLQDKVGVAAALYKEGFLL 162
            PL+F LDDAPAIEALL+A+P PV V D+P PP EDL +K+ +A AL+KEG L+
Sbjct:   40 PLEFGLDDAPAIEALLNAHPDPVMVKDIPRPPTEDLDEKISIAEALFKEGILM 92
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BLAST of mRNA_M-pyrifera_M_contig12547.5139.1 vs. uniprot
Match: A0A835Z731_9STRA (Bifunctional lysine-specific demethylase and histidyl-hydroxylase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z731_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 1.210e-15
Identity = 38/52 (73.08%), Postives = 43/52 (82.69%), Query Frame = 1 
Query:    4 PLQFELDDAPAIEALLSAYPHPVAVSDLPHPPAEDLQDKVGVAAALYKEGFL 159
            PL+FELDDA AIE LL+AYP  VA+ DLPHPPAEDL DK+ +A ALY EGFL
Sbjct:  573 PLEFELDDALAIETLLAAYPRAVAIKDLPHPPAEDLDDKLEIAKALYAEGFL 624
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BLAST of mRNA_M-pyrifera_M_contig12547.5139.1 vs. uniprot
Match: A0A7S3MAB9_9STRA (Bifunctional lysine-specific demethylase and histidyl-hydroxylase n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MAB9_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 7.200e-15
Identity = 38/54 (70.37%), Postives = 46/54 (85.19%), Query Frame = 1 
Query:    1 SPLQFELDDAPAIEALLSAYPHPVAVSDLPHPPAEDLQDKVGVAAALYKEGFLL 162
            SP++FELDD PAIEALL+AYP  + VSDL HP +E+L DK+GVA AL+KEGFLL
Sbjct:  329 SPVEFELDDGPAIEALLAAYPDSITVSDLEHP-SEELDDKIGVAQALFKEGFLL 381
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BLAST of mRNA_M-pyrifera_M_contig12547.5139.1 vs. uniprot
Match: A0A7S3UT75_HETAK (Bifunctional lysine-specific demethylase and histidyl-hydroxylase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UT75_HETAK)

HSP 1 Score: 75.5 bits (184), Expect = 1.190e-14
Identity = 34/54 (62.96%), Postives = 42/54 (77.78%), Query Frame = 1 
Query:    1 SPLQFELDDAPAIEALLSAYPHPVAVSDLPHPPAEDLQDKVGVAAALYKEGFLL 162
            +PL+F  DDAPAIEA+L AYP  V + DLPHPP EDL+DK+G+  AL+ EG LL
Sbjct:  185 APLEFAPDDAPAIEAILGAYPDAVRIKDLPHPPTEDLEDKMGIVEALFNEGILL 238
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BLAST of mRNA_M-pyrifera_M_contig12547.5139.1 vs. uniprot
Match: A0A7S2SU56_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SU56_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 2.330e-14
Identity = 33/53 (62.26%), Postives = 43/53 (81.13%), Query Frame = 1 
Query:    4 PLQFELDDAPAIEALLSAYPHPVAVSDLPHPPAEDLQDKVGVAAALYKEGFLL 162
            PL+F L+DA AI+ LL+AYP+PV V DLPHPP EDL  K+ +A AL++EGFL+
Sbjct:   88 PLEFPLEDALAIDRLLAAYPNPVRVRDLPHPPTEDLPTKITIATALFREGFLV 140
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BLAST of mRNA_M-pyrifera_M_contig12547.5139.1 vs. uniprot
Match: A0A7S2V614_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V614_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 7.120e-12
Identity = 29/42 (69.05%), Postives = 37/42 (88.10%), Query Frame = 1 
Query:    1 SPLQFELDDAPAIEALLSAYPHPVAVSDLPHPPAEDLQDKVG 126
            SPL+FE DD+PAI  LLS++PH V+VS+LPHPP ED+QDK+G
Sbjct:  112 SPLEFESDDSPAIRKLLSSWPHSVSVSELPHPPLEDMQDKLG 153
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BLAST of mRNA_M-pyrifera_M_contig12547.5139.1 vs. uniprot
Match: A0A7S2AKI9_9STRA (Bifunctional lysine-specific demethylase and histidyl-hydroxylase n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2AKI9_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 9.350e-12
Identity = 33/52 (63.46%), Postives = 40/52 (76.92%), Query Frame = 1 
Query:    4 PLQFELDDAPAIEALLSAYPHPVAVSDLPHPPAEDLQDKVGVAAALYKEGFL 159
            PL+F L DAPAI  LL A+  PVAV  LPHPP ED++ KV +AAAL++EGFL
Sbjct:  326 PLEFPLKDAPAIGCLLEAHETPVAVHTLPHPPCEDVETKVSIAAALFQEGFL 377
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BLAST of mRNA_M-pyrifera_M_contig12547.5139.1 vs. uniprot
Match: A0A1Z5JBQ2_FISSO (Bifunctional lysine-specific demethylase and histidyl-hydroxylase n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JBQ2_FISSO)

HSP 1 Score: 58.2 bits (139), Expect = 3.450e-8
Identity = 33/55 (60.00%), Postives = 40/55 (72.73%), Query Frame = 1 
Query:    1 SPLQFELDDAPAIEALL-SAYPHPVAVSDLPHPPAEDLQDKVGVAAALYKEGFLL 162
            SPL+FELDDAPAIE LL +  PH + V+DL H   + ++DKVGVA ALY E  LL
Sbjct:  544 SPLEFELDDAPAIEQLLGTTEPHWICVADLVH---DTIEDKVGVAQALYDENILL 595
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BLAST of mRNA_M-pyrifera_M_contig12547.5139.1 vs. uniprot
Match: A0A5J4YZ28_PORPP (Bifunctional lysine-specific demethylase and histidyl-hydroxylase n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YZ28_PORPP)

HSP 1 Score: 57.0 bits (136), Expect = 8.820e-8
Identity = 33/54 (61.11%), Postives = 37/54 (68.52%), Query Frame = 1 
Query:    1 SPLQFELDDAPAIEALLSAY-PHPVAVSDLPHPPAEDLQDKVGVAAALYKEGFL 159
            SPL FELDDAPA+E LL+   PH V VSDL H    D  DKVG+A AL+ EG L
Sbjct:  513 SPLDFELDDAPALETLLTTIEPHWVLVSDLSHETGSDA-DKVGIAQALFDEGIL 565
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig12547.5139.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
D7FPB9_ECTSI6.380e-2181.48Bifunctional lysine-specific demethylase and histi... [more]
A0A7S2UXW1_9STRA5.840e-1664.15Hypothetical protein (Fragment) n=2 Tax=Fibrocapsa... [more]
A0A835Z731_9STRA1.210e-1573.08Bifunctional lysine-specific demethylase and histi... [more]
A0A7S3MAB9_9STRA7.200e-1570.37Bifunctional lysine-specific demethylase and histi... [more]
A0A7S3UT75_HETAK1.190e-1462.96Bifunctional lysine-specific demethylase and histi... [more]
A0A7S2SU56_9STRA2.330e-1462.26Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2V614_9STRA7.120e-1269.05Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A7S2AKI9_9STRA9.350e-1263.46Bifunctional lysine-specific demethylase and histi... [more]
A0A1Z5JBQ2_FISSO3.450e-860.00Bifunctional lysine-specific demethylase and histi... [more]
A0A5J4YZ28_PORPP8.820e-861.11Bifunctional lysine-specific demethylase and histi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig12547contigM-pyrifera_M_contig12547:7897..9088 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score94.7
Seed ortholog evalue1.8e-17
Seed eggNOG ortholog2880.D7FPB9
Preferred nameC14orf169
KEGG koko:K16914
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005488,GO:0005506,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0006325,GO:0006338,GO:0006355,GO:0006464,GO:0006482,GO:0006807,GO:0006950,GO:0006970,GO:0006979,GO:0006996,GO:0008150,GO:0008152,GO:0008214,GO:0009266,GO:0009408,GO:0009628,GO:0009636,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010033,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016043,GO:0016491,GO:0016569,GO:0016570,GO:0016577,GO:0016705,GO:0016706,GO:0018193,GO:0018195,GO:0019219,GO:0019222,GO:0019538,GO:0022613,GO:0030278,GO:0030279,GO:0030961,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031974,GO:0031981,GO:0032451,GO:0032452,GO:0032453,GO:0034720,GO:0036211,GO:0042221,GO:0042254,GO:0042493,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045471,GO:0045595,GO:0045596,GO:0045667,GO:0045668,GO:0045892,GO:0045934,GO:0046677,GO:0046872,GO:0046914,GO:0048519,GO:0048523,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051093,GO:0051171,GO:0051172,GO:0051213,GO:0051239,GO:0051241,GO:0051252,GO:0051253,GO:0051276,GO:0051864,GO:0055114,GO:0060255,GO:0065007,GO:0070013,GO:0070076,GO:0070544,GO:0070988,GO:0071704,GO:0071840,GO:0080090,GO:0097305,GO:0140096,GO:1901564,GO:1901700,GO:1902679,GO:1903506,GO:1903507,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.histone demethylase activity (H3-K4 specific)
EggNOG OGsKOG3706@1,KOG3706@2759
Ec32 ortholog descriptionJumonji and demethylase NO66 domain protein
Ec32 orthologEc-15_003970.1
EC1.14.11.27
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03009,ko03036
Exons2
Model size215
Cds size213
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815770.0090373-CDS-M-pyrifera_M_contig12547:7897..79901622815770.0090373-CDS-M-pyrifera_M_contig12547:7897..7990Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12547 7898..7990 -
1692277561.1250906-CDS-M-pyrifera_M_contig12547:7897..79901692277561.1250906-CDS-M-pyrifera_M_contig12547:7897..7990Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12547 7898..7990 -
1622815770.0195868-CDS-M-pyrifera_M_contig12547:8968..90881622815770.0195868-CDS-M-pyrifera_M_contig12547:8968..9088Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12547 8969..9088 -
1692277561.1372952-CDS-M-pyrifera_M_contig12547:8968..90881692277561.1372952-CDS-M-pyrifera_M_contig12547:8968..9088Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12547 8969..9088 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig12547.5139.1prot_M-pyrifera_M_contig12547.5139.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig12547 7898..9088 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig12547.5139.1

>prot_M-pyrifera_M_contig12547.5139.1 ID=prot_M-pyrifera_M_contig12547.5139.1|Name=mRNA_M-pyrifera_M_contig12547.5139.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=71bp
SPLQFELDDAPAIEALLSAYPHPVAVSDLPHPPAEDLQDKVGVAAALYKE
GFLLVVEDDDEEEEEDNASSG
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mRNA from alignment at M-pyrifera_M_contig12547:7897..9088-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig12547.5139.1 ID=mRNA_M-pyrifera_M_contig12547.5139.1|Name=mRNA_M-pyrifera_M_contig12547.5139.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1192bp|location=Sequence derived from alignment at M-pyrifera_M_contig12547:7897..9088- (Macrocystis pyrifera P11B4 male)
AGCCCCCTGCAGTTCGAGCTCGACGACGCTCCAGCAATCGAGGCTCTCTT
GTCGGCTTACCCGCACCCCGTGGCGGTTTCGGATCTGCCCCACCCCCCGG
CTGAGGATCTCCAAGACAAGGCGAGGAATAATGCTGGGTTGGGAAAAAAA
AAGCCTGCAGAATCTGGAACCCCTCCCTTGTGGAACCAAAAAAAACTTTG
GAAAGGATATATTGGCGATCTGCCTGCCCATGTACTGTTCTGGCCGCGAA
AAAAAAGAGGCCGTTTGGACGCTCATGAGAAGATCAAAACGGGGATTGTA
CAAGCTCCCGGCCAGATAGTTTTAGCGTGTTTGAATGAAACCCTTTCTCA
TGTTTTTTTTTTTTTTTGGTGTGACAAGAGCCGTATCTCGGTCTGTGTCT
GTTGCAATTTCGTTGACTTTATCTCACGGAATCGTGTGCTCTTAGATTTT
GATTGTCATTCTACTCTACTCTACCTTATTGAATGCCCTACCCGAGCGTC
ATGACCCAAAAAACAAACAGCTTTGGTACCCGGGTACCCCGCCCCACACA
CTATACTCTGACGCGAAATATACTCCCCGTTTGCACTCTAATAGGAATAC
CACACGGGTATTACACTTCCCGCCAGAGTGATACCCTACATAAAACGTTA
CCCGAGTATCATGACCAAACAACAAACAACTTCGGGTACCCCGTCCCATA
TACTGGTAGTACTCGGACCCGAAGTATACTCCTTGTTTGCACTCTAATGA
GAATATCAAACGGGTATTATATTACCGGTCAGAGTGATACTCTACAAAGT
ACATTACCGGTCCCCGAGTATCTTGACCAACACAACAACCCGGGTACGCC
ATACGCCATGGAATACCATTATGTCCCGAAATATACTCCCCGTTTGCACC
TCTACGGTGACTATCAAACGGGTAGTATATTTCTGGTCAGATTGAACAGC
CAACTTTGGTACCCGGGTACCCCGTCCCATAGGCTACTCTGACCCGAAGT
ATACTGCGAGGAATAAATGAGCATCACGAACAATGACCGGCTTAACAACA
AAGAATGAAAAACGCAACGCACCGACCATCCTTCCGTTCGTCCGTCAGGT
GGGGGTGGCGGCGGCTCTCTACAAAGAGGGATTCTTGCTCGTGGTGGAGG
ACGACGACGAAGAGGAGGAGGAGGATAACGCCTCTTCGGGTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig12547:7897..9088-

>mRNA_M-pyrifera_M_contig12547.5139.1 ID=mRNA_M-pyrifera_M_contig12547.5139.1|Name=mRNA_M-pyrifera_M_contig12547.5139.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=426bp|location=Sequence derived from alignment at M-pyrifera_M_contig12547:7897..9088- (Macrocystis pyrifera P11B4 male)
AGCCCCCTGCAGTTCGAGCTCGACGACGCTCCAGCAATCGAGGCTCTCTT
GTCGGCTTACCCGCACCCCGTGGCGGTTTCGGATCTGCCCCACCCCCCGG
CTGAGGATCTCCAAGACAAGAGCCCCCTGCAGTTCGAGCTCGACGACGCT
CCAGCAATCGAGGCTCTCTTGTCGGCTTACCCGCACCCCGTGGCGGTTTC
GGATCTGCCCCACCCCCCGGCTGAGGATCTCCAAGACAAGGTGGGGGTGG
CGGCGGCTCTCTACAAAGAGGGATTCTTGCTCGTGGTGGAGGACGACGAC
GAAGAGGAGGAGGAGGATAACGCCTCTTCGGGTGTGGGGGTGGCGGCGGC
TCTCTACAAAGAGGGATTCTTGCTCGTGGTGGAGGACGACGACGAAGAGG
AGGAGGAGGATAACGCCTCTTCGGGT
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