mRNA_M-pyrifera_M_contig124699.5028.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig124699.5028.1
Unique NamemRNA_M-pyrifera_M_contig124699.5028.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig124699.5028.1 vs. uniprot
Match: A0A2E7KJC5_9PLAN (Uncharacterized protein n=6 Tax=Gimesia TaxID=1649453 RepID=A0A2E7KJC5_9PLAN)

HSP 1 Score: 140 bits (353), Expect = 1.680e-40
Identity = 67/70 (95.71%), Postives = 70/70 (100.00%), Query Frame = 1 
Query:    1 LPWSEYRKLEQEIGQESLIGKSNLSSDKVNSRIRELIGFEKRYGIVFLGERKWLELLCTVNTPRNYALWV 210
            LPWSEY+KLEQEIG+ESLIGKS+LSSDKVNSRIRELIGFEKRYGIVFLGERKWLELLCTVNTPRNYALWV
Sbjct:   13 LPWSEYQKLEQEIGEESLIGKSDLSSDKVNSRIRELIGFEKRYGIVFLGERKWLELLCTVNTPRNYALWV 82
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BLAST of mRNA_M-pyrifera_M_contig124699.5028.1 vs. uniprot
Match: A0A518FPZ3_9PLAN (Uncharacterized protein n=1 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A518FPZ3_9PLAN)

HSP 1 Score: 109 bits (272), Expect = 2.780e-28
Identity = 52/70 (74.29%), Postives = 62/70 (88.57%), Query Frame = 1 
Query:    1 LPWSEYRKLEQEIGQESLIGKSNLSSDKVNSRIRELIGFEKRYGIVFLGERKWLELLCTVNTPRNYALWV 210
            LPWSEYRKLE+EI QESLIG+S+LSS+K+NSRIRELIGFEKRYGIV+LGER+WLE  C  N+  +Y +WV
Sbjct:   13 LPWSEYRKLEREIAQESLIGRSDLSSEKINSRIRELIGFEKRYGIVYLGERQWLER-CAANSRMSYPVWV 81
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig124699.5028.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2E7KJC5_9PLAN1.680e-4095.71Uncharacterized protein n=6 Tax=Gimesia TaxID=1649... [more]
A0A518FPZ3_9PLAN2.780e-2874.29Uncharacterized protein n=1 Tax=Gimesia panareensi... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig124699contigM-pyrifera_M_contig124699:59..268 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size210
Cds size210
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815764.5223167-CDS-M-pyrifera_M_contig124699:58..2681622815764.5223167-CDS-M-pyrifera_M_contig124699:58..268Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig124699 59..268 -
1692277558.6380465-CDS-M-pyrifera_M_contig124699:58..2681692277558.6380465-CDS-M-pyrifera_M_contig124699:58..268Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig124699 59..268 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig124699.5028.1prot_M-pyrifera_M_contig124699.5028.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig124699 59..268 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig124699.5028.1

>prot_M-pyrifera_M_contig124699.5028.1 ID=prot_M-pyrifera_M_contig124699.5028.1|Name=mRNA_M-pyrifera_M_contig124699.5028.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=70bp
LPWSEYRKLEQEIGQESLIGKSNLSSDKVNSRIRELIGFEKRYGIVFLGE
RKWLELLCTVNTPRNYALWV
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mRNA from alignment at M-pyrifera_M_contig124699:59..268-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig124699.5028.1 ID=mRNA_M-pyrifera_M_contig124699.5028.1|Name=mRNA_M-pyrifera_M_contig124699.5028.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=210bp|location=Sequence derived from alignment at M-pyrifera_M_contig124699:59..268- (Macrocystis pyrifera P11B4 male)
TTGCCGTGGTCTGAATATCGCAAGCTCGAACAGGAGATCGGACAGGAATC
GCTGATTGGTAAAAGTAATTTGTCGTCGGATAAAGTCAACAGTCGGATCC
GGGAACTGATCGGTTTTGAGAAACGGTACGGCATAGTCTTCCTGGGGGAA
CGAAAGTGGCTGGAGTTACTATGCACGGTCAATACCCCAAGGAATTATGC
GCTCTGGGTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig124699:59..268-

>mRNA_M-pyrifera_M_contig124699.5028.1 ID=mRNA_M-pyrifera_M_contig124699.5028.1|Name=mRNA_M-pyrifera_M_contig124699.5028.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=420bp|location=Sequence derived from alignment at M-pyrifera_M_contig124699:59..268- (Macrocystis pyrifera P11B4 male)
TTGCCGTGGTCTGAATATCGCAAGCTCGAACAGGAGATCGGACAGGAATC
GCTGATTGGTAAAAGTAATTTGTCGTCGGATAAAGTCAACAGTCGGATCC
GGGAACTGATCGGTTTTGAGAAACGGTACGGCATAGTCTTCCTGGGGGAA
CGAAAGTGGCTGGAGTTACTATGCACGGTCAATACCCCAAGGAATTATGC
GCTCTGGGTCTTGCCGTGGTCTGAATATCGCAAGCTCGAACAGGAGATCG
GACAGGAATCGCTGATTGGTAAAAGTAATTTGTCGTCGGATAAAGTCAAC
AGTCGGATCCGGGAACTGATCGGTTTTGAGAAACGGTACGGCATAGTCTT
CCTGGGGGAACGAAAGTGGCTGGAGTTACTATGCACGGTCAATACCCCAA
GGAATTATGCGCTCTGGGTC
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