mRNA_M-pyrifera_M_contig124635.5009.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig124635.5009.1
Unique NamemRNA_M-pyrifera_M_contig124635.5009.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig124635.5009.1 vs. uniprot
Match: A0A7S1C6V7_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C6V7_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 1.310e-18
Identity = 54/136 (39.71%), Postives = 73/136 (53.68%), Query Frame = 1
Query:   82 LVFFITFLIFPGVIDAIPYHATMGTPAIAKDEWWPILLLLEFNLCDTTGRFLAARIN-WNERVTFWVSIVRSITIPLFIFIARSTPPTGGIVFSNDVSAIVVMLVFAFTNGLTASRAMILAPQLTPKKDREAAGFL 486
            L+F +TF +FPG I  IPY  T+   ++    WWPI+L+  FN  D TGR LA     W  +     ++ R   IPLF+  A      GG  F +D+  +V++ VFA TNG  AS  M+ AP      DRE AGF+
Sbjct:  216 LIFVMTFSVFPGEISQIPYQGTVHGMSVLGQGWWPIVLITCFNCFDLTGRSLAGMATIWTRKTILIPALFRYGLIPLFVICAYHG---GG--FFSDIFTLVMVAVFAITNGHVASVGMMHAPSNVAPHDRERAGFM 346          
BLAST of mRNA_M-pyrifera_M_contig124635.5009.1 vs. uniprot
Match: A0A7S1C545_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C545_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 2.880e-18
Identity = 54/136 (39.71%), Postives = 73/136 (53.68%), Query Frame = 1
Query:   82 LVFFITFLIFPGVIDAIPYHATMGTPAIAKDEWWPILLLLEFNLCDTTGRFLAARIN-WNERVTFWVSIVRSITIPLFIFIARSTPPTGGIVFSNDVSAIVVMLVFAFTNGLTASRAMILAPQLTPKKDREAAGFL 486
            L+F +TF +FPG I  IPY  T+   ++    WWPI+L+  FN  D TGR LA     W  +     ++ R   IPLF+  A      GG  F +D+  +V++ VFA TNG  AS  M+ AP      DRE AGF+
Sbjct:  418 LIFVMTFSVFPGEISQIPYQGTVHGMSVLGQGWWPIVLITCFNCFDLTGRSLAGMATIWTRKTILIPALFRYGLIPLFVICAYHG---GG--FFSDIFTLVMVAVFAITNGHVASVGMMHAPSNVAPHDRERAGFM 548          
BLAST of mRNA_M-pyrifera_M_contig124635.5009.1 vs. uniprot
Match: UPI0014032424 (equilibrative nucleoside transporter 1 n=1 Tax=Amblyraja radiata TaxID=386614 RepID=UPI0014032424)

HSP 1 Score: 65.9 bits (159), Expect = 2.280e-10
Identity = 49/139 (35.25%), Postives = 72/139 (51.80%), Query Frame = 1
Query:   76 VFLVFFITFLIFPGV-IDAIPYHATMGTPAIAKDEWWPILLLLEFNLCDTTGRFLAARINWNERVTFWVS---IVRSITIPLFIFIARSTPPTGGIVFSNDVSAIVVMLVFAFTNGLTASRAMILAPQLTPKKDREAAG 480
            V+ +F +T  +FP V +DA+   +T+    I    + PI   L FNL D  GR L A   W  + + W++   I R + IPLF+ +    P    + F++D   I  M++FAF+NG TAS  M   PQ    K+ E AG
Sbjct:   21 VWFIFTVTISVFPAVTMDAV---STVAGDGIWGLYFIPISCFLVFNLFDWFGRSLTAFCMWPRKGSKWLAALVITRVVFIPLFM-LCNIYPRQLPVFFAHDAWYICFMVLFAFSNGYTASLCMCYGPQNVSPKEAEMAG 155          
BLAST of mRNA_M-pyrifera_M_contig124635.5009.1 vs. uniprot
Match: UPI00112950AD (equilibrative nucleoside transporter 1 n=1 Tax=Rhinatrema bivittatum TaxID=194408 RepID=UPI00112950AD)

HSP 1 Score: 65.1 bits (157), Expect = 1.330e-9
Identity = 49/147 (33.33%), Postives = 73/147 (49.66%), Query Frame = 1
Query:   61 YPMS-GVFLVFFITFLIFPGVI-DAIPYHATMGTPAIAKDEWWPILLLLEFNLCDTTGRFLAARINW---NERVTFWVSIVRSITIPLFIFIARSTPPTGGIVFSNDVSAIVVMLVFAFTNGLTASRAMILAPQLTPKKDREAAGFL 486
            +PM+  V LVF +T  +FP V  DA    +++   +     + P+   L FNLCD  GR L A   W   + ++   + I R I IPLFI           + FS+D   I++M++FAF+NG  AS  M   P+     + E AG +
Sbjct:   97 WPMALSVCLVFTVTIGVFPAVTADA---KSSIEGSSAWSGYFIPVSCFLLFNLCDWAGRSLTAVCMWPGMDSKLLHIMVIARLIFIPLFILCNIQPRQYTPVFFSHDAWYILIMIIFAFSNGYLASLCMCFGPKKVLAHEAETAGAI 240          
BLAST of mRNA_M-pyrifera_M_contig124635.5009.1 vs. uniprot
Match: A0A6A2Y523_HIBSY (Equilibrative nucleotide transporter 1 n=3 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A2Y523_HIBSY)

HSP 1 Score: 65.9 bits (159), Expect = 1.360e-9
Identity = 42/155 (27.10%), Postives = 74/155 (47.74%), Query Frame = 1
Query:   25 RLSLWERISLIGYPMSGVFLVFFITFLIFPGVIDAIPYHATMGTPAIAKDEWWPILLLLEFNLCDTTGRFLAA-RINWNERVTFWVSIVRSITIPLFIFIARSTPPTGGIVFSNDVSAIVVMLVFAFTNGLTASRAMILAPQLTPKKDREAAGFL 486
            R +LW  +  + +   GV L++ +T  IFPG I       T    ++   +W+P+LL++ FN+ D  G+ L A  +  N +V  +  +VR +  P+FI         G   F  ++   ++  +   TNG   S  MI+AP+    +  E +G +
Sbjct:  257 RATLWNIVGTVKWYGFGVVLIYLVTLAIFPGYI-------TEDVHSLILKDWYPVLLIMCFNVFDLVGKSLTAVYLLENAKVVIYACVVRLLFFPIFIGCLH-----GPRFFRTEIPISLLTCLLGLTNGYLTSVLMIMAPKTVQIQHAETSGIV 399          
BLAST of mRNA_M-pyrifera_M_contig124635.5009.1 vs. uniprot
Match: A0A7S0FYT7_9DINO (Hypothetical protein n=1 Tax=Pyrodinium bahamense TaxID=73915 RepID=A0A7S0FYT7_9DINO)

HSP 1 Score: 65.1 bits (157), Expect = 2.500e-9
Identity = 48/142 (33.80%), Postives = 76/142 (53.52%), Query Frame = 1
Query:   73 GVFLVFFITFLIFPGVIDAIPYHATMGTPAIAKDEWWPILLLLEFNLCDTTGRFLAARINWNE-RVTFWVSIVRSITIPLFIFIARSTPPTGG--IVFSNDVSAIVVMLVFAFTNGLTASRAMILAPQ-LTPKKDREAAGFL 486
            GVF +F +TF++FPGV+    +   +G PA      +  L++ EF L D  GR  A  +     +V    S+ R+  +PLFI         GG    FSN V  +V+M +FAF+NG  ++  M+L P+ +  K+++E AG +
Sbjct:  257 GVFFIFLVTFVVFPGVVTR--WSGALGLPATR----FVTLMVGEFQLLDVAGRTAAGYVRAPRGKVVLASSLSRAAFVPLFI-----GAQIGGENSFFSNGVWEVVLMGLFAFSNGFVSTLGMMLGPERVCFKEEKETAGHI 387          
BLAST of mRNA_M-pyrifera_M_contig124635.5009.1 vs. uniprot
Match: A0A0G4FR29_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4FR29_VITBC)

HSP 1 Score: 65.1 bits (157), Expect = 2.660e-9
Identity = 45/145 (31.03%), Postives = 75/145 (51.72%), Query Frame = 1
Query:   55 IGYPMSGVFLVFFITFLIFPGVIDAIPYHATMGTPAIAKDEWWPILLLLEFNLCDTTGRFLA-ARINWNERVTFWVSIVRSITIPLFIFIARSTPPTGGIVFSNDVSAIVVMLVFAFTNGLTASRAMILAPQLTPKKDREAAGFL 486
            +G  +  + L+F ++F +FP +I  IP ++T+  P + K +W+ +L L  F +CDT GRFL   R     +    V + R    PL I +A     TG +  ++D+   + + +  FTNG T S  +IL  +    K+R+ A  L
Sbjct:  325 VGPHLCVLMLIFVVSFGLFPALITTIPAYSTLLKP-LNKSQWYQLLQLTWFAVCDTIGRFLCHIRFGLTLKTMPIVVLARFALYPLMIALA-----TGRL--ASDLLTTLSVAILGFTNGHTTSLIIILITEFCSPKERQYAATL 461          
BLAST of mRNA_M-pyrifera_M_contig124635.5009.1 vs. uniprot
Match: A0A6P7XMK2_9AMPH (equilibrative nucleoside transporter 1 n=2 Tax=Microcaecilia unicolor TaxID=1415580 RepID=A0A6P7XMK2_9AMPH)

HSP 1 Score: 63.5 bits (153), Expect = 8.970e-9
Identity = 52/148 (35.14%), Postives = 73/148 (49.32%), Query Frame = 1
Query:   61 YPMS-GVFLVFFITFLIFPGVI-DAIPYHATMGTPAIAKDEWW-PILLLLEFNLCDTTGRFLAARINWNERVTFWVSIV---RSITIPLFIFIARSTPPTGGIVFSNDVSAIVVMLVFAFTNGLTASRAMILAPQLTPKKDREAAGFL 486
            +PM+  V  VF +T  +FP V  DA    +T+     A   ++ P+   L FNLCD  GR L A   W  + +  + I+   R I IPLF+           + FS+D   IVVM+VFAF+NG  AS  M   P+     + E AG +
Sbjct:  295 WPMALSVCFVFTVTIGVFPAVTADA---RSTIAADTSAWSGYFIPVSCFLLFNLCDWAGRSLTAVCMWPGKDSILLHILVIARIIFIPLFMLCNIHPRQYLPVFFSHDSYYIVVMIVFAFSNGYLASLCMCFGPKKVLAHEAETAGAI 439          
BLAST of mRNA_M-pyrifera_M_contig124635.5009.1 vs. uniprot
Match: S8D0S7_9LAMI (Equilibrative nucleoside transporter 1 n=1 Tax=Genlisea aurea TaxID=192259 RepID=S8D0S7_9LAMI)

HSP 1 Score: 63.2 bits (152), Expect = 1.160e-8
Identity = 43/159 (27.04%), Postives = 73/159 (45.91%), Query Frame = 1
Query:   13 EEGERLSLWERISLIGYPMSGVFLVFFITFLIFPGVIDAIPYHATMGTPAIAKDEWWPILLLLEFNLCDTTGRFLAA-RINWNERVTFWVSIVRSITIPLFIFIARSTPPTGGIVFSNDVSAIVVMLVFAFTNGLTASRAMILAPQLTPKKDREAAGFL 486
            +E   L LWE    + + +  + + F +T  IFPG + A          +    +W+PI+L++ +N+ D  G+ L +  I  N       +  R++ +P F F  +     G  VF  +V   V+  +   +NG  AS  +I  P+   +KD E  GFL
Sbjct:  239 DEASSLCLWEVAGSVKWYILSILITFAVTCSIFPGSVTA-------DVQSSYLKDWYPIILVMAYNVSDLVGKSLTSIYIVENPGTAMVGAFARTLFLPAFYFCLK-----GPEVFRTEVPVTVLTCLLGLSNGYFASVLLIKGPKSVGRKDAETVGFL 385          
BLAST of mRNA_M-pyrifera_M_contig124635.5009.1 vs. uniprot
Match: A0A2J6LAS9_LACSA (Uncharacterized protein n=2 Tax=Lactuca TaxID=4235 RepID=A0A2J6LAS9_LACSA)

HSP 1 Score: 63.2 bits (152), Expect = 1.180e-8
Identity = 42/161 (26.09%), Postives = 76/161 (47.20%), Query Frame = 1
Query:    1 TEEEEEGERLSLWERISLIGYPMSGVFLVFFITFLIFPGVIDAIPYHATMGTPAIAKDEWWPILLLLEFNLCDTTGRFLAA-RINWNERVTFWVSIVRSITIPLFIFIARSTPPTGGIVFSNDVSAIVVMLVFAFTNGLTASRAMILAPQLTPKKDREAAG 480
            +E+EE+G      E +  + +   GV +++ +T  IFPG I       T    +   ++W+PI+L+  FN+CD  G+ L A  +  N +V    S  R +  P+++         G +V   ++   +V  +   TNG   S  +++ P+  P +  E AG
Sbjct:  248 SEKEEKGAVTGAREIMEAVKWYGIGVIILYVVTLAIFPGYI-------TEDVHSEILNDWYPIILIAAFNVCDLIGKCLTAVYVVENAKVAIGASFARLLFFPVYLACLH-----GPMVLRTEIPVTIVTCLLGLTNGYLTSCLLMVGPKTVPLQHAETAG 396          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig124635.5009.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S1C6V7_9STRA1.310e-1839.71Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A7S1C545_9STRA2.880e-1839.71Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
UPI00140324242.280e-1035.25equilibrative nucleoside transporter 1 n=1 Tax=Amb... [more]
UPI00112950AD1.330e-933.33equilibrative nucleoside transporter 1 n=1 Tax=Rhi... [more]
A0A6A2Y523_HIBSY1.360e-927.10Equilibrative nucleotide transporter 1 n=3 Tax=Hib... [more]
A0A7S0FYT7_9DINO2.500e-933.80Hypothetical protein n=1 Tax=Pyrodinium bahamense ... [more]
A0A0G4FR29_VITBC2.660e-931.03Uncharacterized protein n=1 Tax=Vitrella brassicaf... [more]
A0A6P7XMK2_9AMPH8.970e-935.14equilibrative nucleoside transporter 1 n=2 Tax=Mic... [more]
S8D0S7_9LAMI1.160e-827.04Equilibrative nucleoside transporter 1 n=1 Tax=Gen... [more]
A0A2J6LAS9_LACSA1.180e-826.09Uncharacterized protein n=2 Tax=Lactuca TaxID=4235... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig124635contigM-pyrifera_M_contig124635:32..517 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score71.6
Seed ortholog evalue3.7e-10
Seed eggNOG ortholog3656.XP_008456013.1
KEGG koko:K15014
KEGG TC2.A.57.1
Hectar predicted targeting categorysignal anchor
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0016020,GO:0031090,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0098588,GO:0098805
EggNOG free text desc.Equilibrative nucleotide transporter
EggNOG OGs37RUQ@33090,3GEUC@35493,4JJ7T@91835,KOG1479@1,KOG1479@2759
COG Functional cat.F
Best tax levelfabids
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000
Exons1
Model size486
Cds size486
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815763.7799911-CDS-M-pyrifera_M_contig124635:31..5171622815763.7799911-CDS-M-pyrifera_M_contig124635:31..517Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig124635 32..517 +
1692277558.3758736-CDS-M-pyrifera_M_contig124635:31..5171692277558.3758736-CDS-M-pyrifera_M_contig124635:31..517Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig124635 32..517 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig124635.5009.1prot_M-pyrifera_M_contig124635.5009.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig124635 32..517 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig124635.5009.1

>prot_M-pyrifera_M_contig124635.5009.1 ID=prot_M-pyrifera_M_contig124635.5009.1|Name=mRNA_M-pyrifera_M_contig124635.5009.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=162bp
TEEEEEGERLSLWERISLIGYPMSGVFLVFFITFLIFPGVIDAIPYHATM
GTPAIAKDEWWPILLLLEFNLCDTTGRFLAARINWNERVTFWVSIVRSIT
IPLFIFIARSTPPTGGIVFSNDVSAIVVMLVFAFTNGLTASRAMILAPQL
TPKKDREAAGFL
back to top

mRNA from alignment at M-pyrifera_M_contig124635:32..517+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig124635.5009.1 ID=mRNA_M-pyrifera_M_contig124635.5009.1|Name=mRNA_M-pyrifera_M_contig124635.5009.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=486bp|location=Sequence derived from alignment at M-pyrifera_M_contig124635:32..517+ (Macrocystis pyrifera P11B4 male)
ACCGAGGAGGAAGAGGAGGGCGAGCGGCTCTCGTTGTGGGAGAGAATTAG TCTCATTGGATATCCAATGTCTGGTGTCTTTTTGGTCTTCTTCATCACCT TCCTCATCTTCCCAGGGGTCATCGATGCCATTCCGTATCACGCCACCATG GGAACGCCAGCCATTGCCAAGGACGAGTGGTGGCCCATCCTTCTCCTCCT TGAGTTCAACTTATGTGACACCACAGGAAGGTTTCTCGCAGCCCGCATCA ACTGGAACGAACGCGTCACCTTCTGGGTCAGCATCGTGAGATCAATCACC ATCCCACTCTTCATCTTCATTGCTAGGTCTACTCCCCCTACAGGTGGCAT TGTCTTCTCCAACGACGTCTCTGCCATTGTTGTTATGCTTGTCTTTGCAT TCACCAACGGTCTCACTGCTTCCAGAGCAATGATTCTTGCCCCACAACTT ACTCCAAAGAAAGATAGAGAAGCAGCAGGCTTCCTC
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig124635:32..517+

>mRNA_M-pyrifera_M_contig124635.5009.1 ID=mRNA_M-pyrifera_M_contig124635.5009.1|Name=mRNA_M-pyrifera_M_contig124635.5009.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=972bp|location=Sequence derived from alignment at M-pyrifera_M_contig124635:32..517+ (Macrocystis pyrifera P11B4 male)
ACCGAGGAGGAAGAGGAGGGCGAGCGGCTCTCGTTGTGGGAGAGAATTAG
TCTCATTGGATATCCAATGTCTGGTGTCTTTTTGGTCTTCTTCATCACCT
TCCTCATCTTCCCAGGGGTCATCGATGCCATTCCGTATCACGCCACCATG
GGAACGCCAGCCATTGCCAAGGACGAGTGGTGGCCCATCCTTCTCCTCCT
TGAGTTCAACTTATGTGACACCACAGGAAGGTTTCTCGCAGCCCGCATCA
ACTGGAACGAACGCGTCACCTTCTGGGTCAGCATCGTGAGATCAATCACC
ATCCCACTCTTCATCTTCATTGCTAGGTCTACTCCCCCTACAGGTGGCAT
TGTCTTCTCCAACGACGTCTCTGCCATTGTTGTTATGCTTGTCTTTGCAT
TCACCAACGGTCTCACTGCTTCCAGAGCAATGATTCTTGCCCCACAACTT
ACTCCAAAGAAAGATAGAGAAGCAGCAGGCTTCCTCACCGAGGAGGAAGA
GGAGGGCGAGCGGCTCTCGTTGTGGGAGAGAATTAGTCTCATTGGATATC
CAATGTCTGGTGTCTTTTTGGTCTTCTTCATCACCTTCCTCATCTTCCCA
GGGGTCATCGATGCCATTCCGTATCACGCCACCATGGGAACGCCAGCCAT
TGCCAAGGACGAGTGGTGGCCCATCCTTCTCCTCCTTGAGTTCAACTTAT
GTGACACCACAGGAAGGTTTCTCGCAGCCCGCATCAACTGGAACGAACGC
GTCACCTTCTGGGTCAGCATCGTGAGATCAATCACCATCCCACTCTTCAT
CTTCATTGCTAGGTCTACTCCCCCTACAGGTGGCATTGTCTTCTCCAACG
ACGTCTCTGCCATTGTTGTTATGCTTGTCTTTGCATTCACCAACGGTCTC
ACTGCTTCCAGAGCAATGATTCTTGCCCCACAACTTACTCCAAAGAAAGA
TAGAGAAGCAGCAGGCTTCCTC
back to top