prot_M-pyrifera_M_contig96876.22312.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig96876.22312.1
Unique Nameprot_M-pyrifera_M_contig96876.22312.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length180
Homology
BLAST of mRNA_M-pyrifera_M_contig96876.22312.1 vs. uniprot
Match: V4LKI4_EUTSA (Uncharacterized protein n=7 Tax=Brassicaceae TaxID=3700 RepID=V4LKI4_EUTSA)

HSP 1 Score: 57.8 bits (138), Expect = 1.320e-6
Identity = 55/179 (30.73%), Postives = 89/179 (49.72%), Query Frame = 0
Query:    2 RSASVLERTVYVGRL-PVETSAVAVQDFFSRFGAVAEVEDPGVRPGARGRFF-YVVFSGSDEAKRAVAEANGQ-------SLVPGGEAMQVQMRRPRVGADVERGEP---DPK--TVWVGALPAGKTEEEIAALFGRAGTVVNVFPRLRARRPWAFVEMSSAAEAEAAVAALNGHMLPG 166
            R A   + T++VG L P  T  +  + F S + +V   +    R   R + + +V F    E  RA+ E NGQ        + P      + M+ P +  D + G P   DP   T++VGAL A  T++E+ ++FGR G +++V  ++   +   FV+ S+ A AE A++ LNG  L G
Sbjct:  159 RQAEGPDHTIFVGDLAPEVTDYMLTETFTSVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQMRAMTEMNGQFCSTRPMRIGPAANKKPLTMQ-PGMYQDTQGGNPGEVDPNNTTIFVGALDASVTDDELKSVFGRFGELIHV--KIPPGKRCGFVQYSNRASAEHALSMLNGTQLGG 334          
BLAST of mRNA_M-pyrifera_M_contig96876.22312.1 vs. uniprot
Match: UPI0002C34B79 (28 kDa ribonucleoprotein, chloroplastic-like n=1 Tax=Fragaria vesca subsp. vesca TaxID=101020 RepID=UPI0002C34B79)

HSP 1 Score: 55.5 bits (132), Expect = 6.630e-6
Identity = 58/171 (33.92%), Postives = 85/171 (49.71%), Query Frame = 0
Query:    8 ERTVYVGRLPVETSAVAVQDFFSRFGAV--AEVEDPGVRPGARGRFFYVVFSGSDEAKRAVAEANGQSLVPGGEAMQVQMRRPRVGADVER----GEPDPKTVWVGALPAGKTEEEIAALFGRAGTVVN---VFPRLRAR-RPWAFVEMSSAAEAEAAVAALNGHMLPGAT 168
            E  +YVG LP +  +  + + F+  G V  AEV        +RG F +V  S  +EA++AV   N   L  GG  + V    PR G+  ER     EP  + +++G LP    +  +  +F   G VV+   V+ R   R R + FV+ S+ AE E A+AAL+G  L G T
Sbjct:  114 EAKLYVGNLPFDVDSERLANVFNEAGIVEIAEVIYNRETDQSRG-FGFVTMSTVEEAEKAVEMFNRYDL--GGRPLTVNKAAPR-GSRPERPPRVNEPSYR-IYIGNLPWQVDDSRLEQVFSEHGNVVSARVVYDRETGRSRGFGFVQFSTEAEVEDAIAALDGQSLDGRT 279          
BLAST of mRNA_M-pyrifera_M_contig96876.22312.1 vs. uniprot
Match: A0A087GB48_ARAAL (Uncharacterized protein n=3 Tax=Arabis TaxID=50451 RepID=A0A087GB48_ARAAL)

HSP 1 Score: 55.1 bits (131), Expect = 1.120e-5
Identity = 50/178 (28.09%), Postives = 88/178 (49.44%), Query Frame = 0
Query:    2 RSASVLERTVYVGRL-PVETSAVAVQDFFSRFGAVAEVEDPGVRPGARGRFF-YVVFSGSDEAKRAVAEANGQ-------SLVPGGE----AMQVQMRRPRVGADVERGEPDPKTVWVGALPAGKTEEEIAALFGRAGTVVNVFPRLRARRPWAFVEMSSAAEAEAAVAALNGHMLPG 166
            R A   + T++VG L P  T  +  + F + + +V   +    R   R + + +V F+  +E  RA+ E NGQ        + P        MQ  M +   G +    +P+  T++VGAL A  T++E+ + FG+ G +++V  ++   +   FV+ ++ A AE A++ LNG  L G
Sbjct:  160 RQAEGADHTIFVGDLAPEVTDNMLTETFMNVYASVKGAKVVTDRTTGRSKGYGFVRFADENEQMRAMTEMNGQYCSTRPMRIGPAANKKPLTMQPAMYQDPQGGNPGESDPNNTTIFVGALDASVTDDELKSQFGQFGELIHV--KIPPGKRCGFVQYANRACAEHALSVLNGTQLGG 335          
BLAST of mRNA_M-pyrifera_M_contig96876.22312.1 vs. uniprot
Match: A0A7N0TN09_KALFE (Uncharacterized protein n=1 Tax=Kalanchoe fedtschenkoi TaxID=63787 RepID=A0A7N0TN09_KALFE)

HSP 1 Score: 54.7 bits (130), Expect = 1.220e-5
Identity = 62/173 (35.84%), Postives = 86/173 (49.71%), Query Frame = 0
Query:   11 VYVGRLPVETSAVAVQDFFSRFGAV--AEVEDPGVRPGARGRFFYVVFSGSDEAKRAVA-----EANGQSLVPGGEAMQVQMRRPRVGADVERGEPDPKT------VWVGALPAGKTEEEIAALFGRAGTVVN---VFPRLRAR-RPWAFVEMSSAAEAEAAVAALNGHMLPG 166
            ++VG LP +  + A+ + F++ G V  AEV        +RG F +V  S  +EA+RAV      E NG++L        V    PR G+ VER    P++      V+VG LP    +  +  LF   G VV+   VF R   R R + FV MSS AE   A+AAL+G  L G
Sbjct:  115 LFVGNLPYDFDSEALANLFNQAGVVEIAEVIYNRETDQSRG-FGFVTMSTVEEAERAVEMFSRYEVNGRNLT-------VNKAAPR-GSRVER---PPRSFERSFRVYVGNLPWQVDDSRLQQLFSEHGKVVDARVVFDRETQRSRGFGFVTMSSEAEMNDAIAALDGQTLDG 275          
BLAST of mRNA_M-pyrifera_M_contig96876.22312.1 vs. uniprot
Match: A0A399ZH28_9CHLR (RNA-binding protein n=1 Tax=Anaerolineae bacterium TaxID=2052143 RepID=A0A399ZH28_9CHLR)

HSP 1 Score: 52.0 bits (123), Expect = 1.580e-5
Identity = 33/67 (49.25%), Postives = 45/67 (67.16%), Query Frame = 0
Query:  104 VWVGALPAGKTEEEIAALFGRAGTVVNVF---PRLRAR-RPWAFVEMSSAAEAEAAVAALNGHMLPG 166
            ++VG LP   TEEE+ +LF +AGTV +V     R   R + +AFVEMS+A EA+ A++ L GHML G
Sbjct:    5 LYVGNLPYSATEEELKSLFEQAGTVTSVAVIKDRESGRSKGFAFVEMSTAEEAQKAISMLTGHMLGG 71          
BLAST of mRNA_M-pyrifera_M_contig96876.22312.1 vs. uniprot
Match: A0A2G4HWE5_9BACT (RNA-binding protein n=1 Tax=Nitrospirae bacterium TaxID=2026887 RepID=A0A2G4HWE5_9BACT)

HSP 1 Score: 51.2 bits (121), Expect = 2.180e-5
Identity = 32/69 (46.38%), Postives = 45/69 (65.22%), Query Frame = 0
Query:  104 VWVGALPAGKTEEEIAALFGRAGTVVN---VFPRLRAR-RPWAFVEMSSAAEAEAAVAALNGHMLPGAT 168
            ++VG LP   TE+E++ LFGR G+V +   +  +   + R + FVEMSS AE +AAVAALNG  + G T
Sbjct:    5 IYVGGLPYSATEQELSDLFGRHGSVASARIITDKFTGQSRGFGFVEMSSDAEVQAAVAALNGTEMGGRT 73          
BLAST of mRNA_M-pyrifera_M_contig96876.22312.1 vs. uniprot
Match: A0A427YIH7_9TREE (Splicing factor n=1 Tax=Saitozyma podzolica TaxID=1890683 RepID=A0A427YIH7_9TREE)

HSP 1 Score: 53.9 bits (128), Expect = 3.420e-5
Identity = 51/171 (29.82%), Postives = 84/171 (49.12%), Query Frame = 0
Query:    3 SASVLER-TVYVGRLPVETSAVAVQDFFSRFGAVAEVEDPGVRPGARGRFFYVVFSGSDEAKRAVAEANGQSLVPGGEAMQVQMRRPRVGADVERGEPDPKTVWVGALPAGKTEEEIAALFGRAGTV----VNVFPRLRARRPWAFVEMSSAAEAEAAVAA----LNGHML 164
            S S+L R T+++  +P  T    ++   S +G++ +   P  +     RF YV       A+ A+ E +G S    G  + V +  P   A   R +    T++VG L A  TE+++  LF + GT+    +   P  +  + +AFV+MSS AEA+AA+      LNG +L
Sbjct:  753 SVSMLWRSTLFITNIPRGTDDPELRKLLSPYGSILQTRWPSRKYAEHRRFCYVTMDSPASAQNAL-ELHG-SKTSDGFGLTVLISDPS--AKARRSDAGATTLFVGGLTAKTTEQDVRELFAKHGTIRYIKLGFDPVKQISKGFAFVDMSSEAEAQAALQLHGVHLNGRLL 919          
BLAST of mRNA_M-pyrifera_M_contig96876.22312.1 vs. uniprot
Match: A0A3N6RV38_BRACR (Uncharacterized protein (Fragment) n=1 Tax=Brassica cretica TaxID=69181 RepID=A0A3N6RV38_BRACR)

HSP 1 Score: 53.5 bits (127), Expect = 3.480e-5
Identity = 57/180 (31.67%), Postives = 87/180 (48.33%), Query Frame = 0
Query:    2 RSASVLERTVYVGRL-PVETSAVAVQDFFSRFGAVAEVEDPGVRPGARGRFF-YVVFSGSDEAKRAVAEANGQ-------SLVPGGEAMQVQMRRPRVGADVERG----EPDPK--TVWVGALPAGKTEEEIAALFGRAGTVVNVFPRLRARRPWAFVEMSSAAEAEAAVAALNGHMLPG 166
            R A   E T++VG L P  T  +  + F S + +V   +    R   R + + +V F    E  RA+ E NGQ        L P      + M+ P +  D + G    E DP   T++VGAL A  T+EE+ A+FG+ G + +V  ++   +   FV+ ++ A AE A+  LNG  L G
Sbjct:  153 RQAEGPEYTIFVGDLAPEVTDFMLAETFSSVYASVKGAKVMMDRSTGRTKGYGFVRFGDESEQMRAMVEMNGQYCSSRPMRLGPAANKKPLTMQ-PGMYQDTQGGGNPGESDPSNTTIFVGALDASVTDEELRAVFGQFGELTHV--KIPPGKRCGFVQYATRASAEHALLNLNGTQLGG 329          
BLAST of mRNA_M-pyrifera_M_contig96876.22312.1 vs. uniprot
Match: R1FCJ1_EMIHU (RRM domain-containing protein n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1FCJ1_EMIHU)

HSP 1 Score: 52.4 bits (124), Expect = 5.560e-5
Identity = 36/65 (55.38%), Postives = 39/65 (60.00%), Query Frame = 0
Query:  105 WVGALPAGKTEEEIAALFGRAGTVV--NVFPRLRAR-RPWAFVEMSSAAEAEAAVAALNGHMLPG 166
            +VG LP G  EEE+A LFG  G VV  NV      R R +AFV M  A E  AAV ALNGHML G
Sbjct:  124 YVGNLPFGVVEEELADLFGEYGNVVHVNVMTDEDGRSRGFAFVNMEIAEEGAAAVEALNGHMLQG 188          
BLAST of mRNA_M-pyrifera_M_contig96876.22312.1 vs. uniprot
Match: A0A1E3IHN4_9TREE (Uncharacterized protein n=2 Tax=Cryptococcus depauperatus TaxID=5208 RepID=A0A1E3IHN4_9TREE)

HSP 1 Score: 53.1 bits (126), Expect = 6.270e-5
Identity = 45/160 (28.12%), Postives = 73/160 (45.62%), Query Frame = 0
Query:    1 LRSASVLERTVYVGRLPVETSAVAVQDFFSRFGAVAEVEDPGVRPGARGRFFYVVFSGSDEAKRAVAEANGQSLVPGGEAMQVQMRRPRVGADVERGEPDPKTVWVGALPAGKTEEEIAALFGRAGTVVNVF----PRLRARRPWAFVEMSSAAEAEAAV 156
            +R + +   T+YV   P E    A++  F ++G + +   P  +     RF YV       A+  +   +G  +        + +      A V+R +    T++VG L +  TE EI  LF   G + N+     P  R  R +AFVEMS+ AEA+AA+
Sbjct:  766 IRISMLWRSTLYVTNFPREMDDKAIRSLFGQYGRILDTRWPSRKYADTRRFCYVTMESPAAAQECLV-LHGYKVPDASTNFGLTVLVSDPEAKVKRSDAANSTLFVGGLNSKTTENEIQGLFKDYGRISNLKLGWNPEKRICRGFAFVEMSTEAEAKAAL 924          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig96876.22312.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
V4LKI4_EUTSA1.320e-630.73Uncharacterized protein n=7 Tax=Brassicaceae TaxID... [more]
UPI0002C34B796.630e-633.9228 kDa ribonucleoprotein, chloroplastic-like n=1 T... [more]
A0A087GB48_ARAAL1.120e-528.09Uncharacterized protein n=3 Tax=Arabis TaxID=50451... [more]
A0A7N0TN09_KALFE1.220e-535.84Uncharacterized protein n=1 Tax=Kalanchoe fedtsche... [more]
A0A399ZH28_9CHLR1.580e-549.25RNA-binding protein n=1 Tax=Anaerolineae bacterium... [more]
A0A2G4HWE5_9BACT2.180e-546.38RNA-binding protein n=1 Tax=Nitrospirae bacterium ... [more]
A0A427YIH7_9TREE3.420e-529.82Splicing factor n=1 Tax=Saitozyma podzolica TaxID=... [more]
A0A3N6RV38_BRACR3.480e-531.67Uncharacterized protein (Fragment) n=1 Tax=Brassic... [more]
R1FCJ1_EMIHU5.560e-555.38RRM domain-containing protein n=2 Tax=Emiliania hu... [more]
A0A1E3IHN4_9TREE6.270e-528.13Uncharacterized protein n=2 Tax=Cryptococcus depau... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 103..174
e-value: 1.0E-11
score: 54.9
coord: 10..84
e-value: 1.3E-5
score: 34.7
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 11..73
e-value: 3.1E-6
score: 26.9
coord: 104..166
e-value: 5.2E-11
score: 42.2
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 9..88
score: 13.123
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 102..180
score: 13.277
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 3..94
e-value: 4.2E-12
score: 48.0
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 95..178
e-value: 1.6E-14
score: 55.7
NoneNo IPR availablePANTHERPTHR23147SERINE/ARGININE RICH SPLICING FACTORcoord: 10..87
NoneNo IPR availablePANTHERPTHR23147SERINE/ARGININE RICH SPLICING FACTORcoord: 103..177
NoneNo IPR availablePANTHERPTHR23147:SF75SERINE-ARGININE PROTEIN 55coord: 10..87
coord: 103..177
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 9..133

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig96876contigM-pyrifera_M_contig96876:175..714 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig96876.22312.1mRNA_M-pyrifera_M_contig96876.22312.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig96876 175..714 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig96876.22312.1 ID=prot_M-pyrifera_M_contig96876.22312.1|Name=mRNA_M-pyrifera_M_contig96876.22312.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=180bp
LRSASVLERTVYVGRLPVETSAVAVQDFFSRFGAVAEVEDPGVRPGARGR
FFYVVFSGSDEAKRAVAEANGQSLVPGGEAMQVQMRRPRVGADVERGEPD
PKTVWVGALPAGKTEEEIAALFGRAGTVVNVFPRLRARRPWAFVEMSSAA
EAEAAVAALNGHMLPGATEGMVVEVQRAGK
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
IPR035979RBD_domain_sf