prot_M-pyrifera_M_contig9545.22007.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig9545.22007.1
Unique Nameprot_M-pyrifera_M_contig9545.22007.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length611
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig9545.22007.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 554..594
e-value: 0.47
score: 19.0
coord: 84..123
e-value: 0.034
score: 23.3
coord: 32..74
e-value: 25.0
score: 8.2
coord: 447..486
e-value: 0.74
score: 17.8
IPR001680WD40 repeatPFAMPF00400WD40coord: 556..592
e-value: 0.093
score: 13.6
coord: 91..123
e-value: 0.26
score: 12.2
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 454..495
score: 10.475
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 91..123
score: 11.143
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 528..605
e-value: 9.6E-7
score: 29.8
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 425..505
e-value: 3.1E-7
score: 31.9
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 1..210
e-value: 1.9E-12
score: 49.0
NoneNo IPR availablePANTHERPTHR19879TRANSCRIPTION INITIATION FACTOR TFIIDcoord: 45..488
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 473..487
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 91..132
score: 10.1
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 454..495
score: 10.127
IPR036322WD40-repeat-containing domain superfamilySUPERFAMILY50978WD40 repeat-likecoord: 5..592

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig9545contigM-pyrifera_M_contig9545:897..5203 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig9545.22007.1mRNA_M-pyrifera_M_contig9545.22007.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig9545 897..5203 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig9545.22007.1 ID=prot_M-pyrifera_M_contig9545.22007.1|Name=mRNA_M-pyrifera_M_contig9545.22007.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=611bp
GPALLIAGDEDGGVSVQRVPDVGNGGAEGASKRSPTSDLRRAGIHYSSVN
TIKVLPDQRGFVCAGDDNVISAVATLEVSSVEDIRRASFALTGHSGSVTD
CDTAASGHAILSSSTDERMLLWDPVAANTPVASVTVGCPLNSACFSAGDP
YALICAPELGVGRAQGGGDMSNDLVQIWDLRSLRCFRDAVPAAVATAFGD
AQGHAHTAPAPQPAPMQPPPPQNPSSIWADDSSSGATSIRIARTPVQTPS
WLSTALGSTSTASPATPLLRKPAWADDSSDNESVPSGGRWHRGRGSLWHC
QTPDAGERENIFPDSTSPTTKNSASSRGTYLGSDTASTRFSYSSGSRSST
STSPASGGSSTPSLSLAPSSREKGGGVSGSPKLDRGATPVRGGPAVTVSM
ASLPDAGCLHEGGGKTWVPGGLMTWQPSKRRAHKATTRRWDQPGAKGSAE
QKASNGIGASVYSLQVSLDGKSILMASRDATVTLWDTQSREVVYRFGHPR
LSMRARPILVEGALNSEGGGWGRAGGGGGGGRGDVFAGTTDGEVKAWRVG
SRFPNRVYKPHRRHEGFEVTCLSTSQDGSMFASADSSGTVYVQSATGGRG
AVDGREEFDD*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom_sf
IPR019775WD40_repeat_CS
IPR017986WD40_repeat_dom
IPR036322WD40_repeat_dom_sf