prot_M-pyrifera_M_contig9477.21865.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_M-pyrifera_M_contig9477.21865.1
Unique Name	prot_M-pyrifera_M_contig9477.21865.1
Type	polypeptide
Organism	Macrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length	1190

Homology

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BLAST of mRNA_M-pyrifera_M_contig9477.21865.1 vs. uniprot
Match: A0A6H5KFG5_9PHAE (C3H1-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KFG5_9PHAE)

HSP 1 Score: 776 bits (2004), Expect = 4.280e-253
Identity = 650/1237 (52.55%), Postives = 752/1237 (60.79%), Query Frame = 0

Query:    1 VARGAGGALEGVEDAALKPALRTLVRALERAARGQGEALWLLYLRLFALLPGKNEDAVSMVGHALEIFPTSRRIWRLYRYMLRRSDHRQSLSNVIKTYRKQIAALLLLRGPAAXXXXXXXXXXXXXXPRAGVGTGTEAADSASKGLRTPGAPXXXXXXXXXXXXXXNHADATVGMIAYLVLECCAALAEAGYTLQAAAEVLDALG---DGKPLRGWDAAEGHEGSSLLRL----PLDQSEAGDGXXXXXXG------------DRELFPEGVAGALKRARRDLRCLLWLAALHLLVMGVFPQHVLSLAAXXXXXXXXXXXXXXXAENDKETRNDCGWRRPDLLLWPKEWLSPEGDAGARLSASAELFEVISKTFMSALLDAGLLPPEKGAGKGWAPPLRVRDAVFPSAVEAAAARIAGTAPDVSALEGPPLALALNWLTFC-SRGRVGAKGVRMVALACCRRFQLARPDHPAMLEHLLLEHGVSKARPLGDVYREISSAFDKGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSFPTGARLQAVYAFLRVVEMRLKAAADAPVKVSASTAAGAEEEGADIEVARDALQVALVGMWAPAPA-------------TTAVLHRWLQEDG-ESQRLAVEGARTSLFRWADVAAHGGAGVVSGEAGPSGGSLSSRYDALSAERQLSTIVFGLWVLGGASAATDALDHLLSAESFSTISPELRRLAWLQRLETAVVLSTQQ-----VPGEHAVQGVREVALRALADHRTQRR----PEYRTLSHFVASTLD---LSVSGLTNSGDGXXXXXXXXKTEIASAFPFSATASVSSSSSFARDVLTVYANRFREV-RGGIDWVVVAEALGSSESXXXXXXXXXXXXXXXXTDQATAETTCALLRWVSWADEPAAAAGPSAAAAESASALRRNARPYAEKALAKHPRDTGLACAVAALEASTNRPDRAQRILEAALRVSPHCSTLWEQRVALEAGFGAGSKERADSTASAAASTEVLLRLFYGGGRGRVELGALQARTACRVFAAATNPLSRRQTKSLSLQGALQSPEKPAGAAAAATATTAGSEAGARCEGGGHLLIPAPVEVPRSVFLLTGLVSLSLANNGLAAVPPAIGRXXXXXXXXXXXXXXXXXXXXXXXLSGSLRVLRVARNRLASPLPAAPLTGLVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXS-RAPTGLSDALPHLEDLSLP 1189
            VA GA G +  V+ AA+K ALRT VR LERA   Q E LWLLYLRLFA LPGK++DA+ M  +ALE FPTSRRIWRLY  ML+ S    SL   +  YR+QI ALLLL+  AA          XXXX                           XXXXXXXXXXXX  A+A V MI YLVLE C+ LAEAGY LQAAAEVLD+LG   +G+PL GWDA +G    +LLR       ++   G+G   XX G            + +  P GVA ALK A RD RC+LWL ALHLLVMGVFP+H L+LA                  ND       G     LLLWP EWLSP+  A  RLSAS +L +   KTFM+AL D GLLPP +  G  WAP ++ RDA+  SA EA AAR  G APD SALEGPPL LALNWL FC  RGRV A+  RM+A ACCRRFQL+RPD PA+LEH LLEH VSK R LGD Y EIS AFD  G                                     P+G R+QAVYAFLR VE RL+AA       S S +A   + GA +E AR  L+ ALVGMW    +               +  +RWL+E+G ES R A+EGA+ SLFRWAD    GG+G      G             + ERQLSTIVF LWVLGGASAA  +LDH+LSAESFS +S E +RLAWLQRLE A++LSTQQ       G  A+QGVREVALRALADHRT+RR     EY +L+HFVA+TLD    + S + +SG G            AS     AT S +SSSSFA DVLTVYAN FRE  RGG+DWVV AEALG   + XXXXXXXXXXXXXXX                   D   + A  +A++ + ASAL+ NARPY E ALA +P DT L  AVAAL A+T  PD AQR+LEAALR  P+C+ LWEQRVALEAGFG+GS ERA +TA+AAA + V+LRL  GG  G      LQARTA R+  A ++P SRR+ KS SLQ AL++P   +   AAA A                    A +EVPRS+FL+T L SLSLA NGL +       XXXXXXXXXXXXXXXXXXXXXX LSG+LR+LR A NRL SPL A        XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  S RAP GLSDALP LE+L+LP
Sbjct:  539 VACGASGPMGSVDQAAVKSALRTFVRPLERADGAQAEVLWLLYLRLFAFLPGKSDDALGMAEYALEKFPTSRRIWRLYHSMLQTSPG-WSLPEDVSCYRRQIEALLLLQPRAADMRASPQDGSXXXXXXXXXXXXXXXXXXXXXXXXX------XXXXXXXXXXXXXXAEAEVKMIVYLVLERCSLLAEAGYKLQAAAEVLDSLGALAEGQPLWGWDARDGQGRRTLLRTFEGGGHEREGEGNGATRXXGGANAGGSTEASDDNGQRLPAGVAAALKHAPRDSRCVLWLTALHLLVMGVFPRHALTLAENDGGGLG--------GSNDTTA---AGGDLAALLLWPTEWLSPKSSAILRLSASPDLQDATLKTFMTALSDVGLLPPPRSQGC-WAPAIKDRDALLSSAAEAKAARAGGMAPDASALEGPPLVLALNWLAFCLRRGRVDARQGRMMAFACCRRFQLSRPDQPALLEHFLLEHAVSKTRTLGDTYHEISRAFDADGVAAGALRERRDGEGKSASLNPAGARRRDEQSVNLVPPPSGERIQAVYAFLRFVESRLEAAR------SESESANDADRGA-LEDARRVLRDALVGMWTGVSSXXXXXXXXXXXXXARSESYRWLEEEGGESVRQALEGAKASLFRWAD----GGSGGCDAPGG-------------NGERQLSTIVFSLWVLGGASAAIGSLDHILSAESFSGVSAERKRLAWLQRLEAAIILSTQQRRKQQASGVDAMQGVREVALRALADHRTERRCVLPAEYPSLAHFVAATLDRPPATESPVRDSG-GQPGKSISRDPPFASL----ATDSSASSSSFACDVLTVYANHFREAKRGGVDWVVAAEALGGVSAAXXXXXXXXXXXXXXXXXXXXX-------------DHDESGAATAASSVDGASALKANARPYVEMALAMNPADTALCGAVAALWAATGSPDLAQRVLEAALRAHPYCAELWEQRVALEAGFGSGSTERAGATAAAAAGSRVMLRLRCGGKLGGQTPSGLQARTAGRIATAISHPTSRREIKSFSLQAALRAPPGSSAPVAAAGAM-------------------ATIEVPRSIFLMTSLTSLSLAFNGLLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLSGTLRLLRAAGNRLQSPLSATTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEFSERAPAGLSDALPFLEELTLP 1695

The following BLAST results are available for this feature:

BLAST of mRNA_M-pyrifera_M_contig9477.21865.1 vs. uniprot

BLAST of mRNA_M-pyrifera_M_contig9477.21865.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A6H5KFG5_9PHAE	4.280e-253	52.55	C3H1-type domain-containing protein n=2 Tax=Ectoca...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003591	Leucine-rich repeat, typical subtype	SMART	SM00369	LRR_typ_2	coord: 1155..1179 e-value: 120.0 score: 4.5 coord: 1131..1154 e-value: 2.1 score: 17.4 coord: 1082..1105 e-value: 0.76 score: 18.8 coord: 1059..1081 e-value: 18.0 score: 11.1
IPR032675	Leucine-rich repeat domain superfamily	GENE3D	3.80.10.10		coord: 1046..1189 e-value: 1.8E-25 score: 91.1
IPR001611	Leucine-rich repeat	PFAM	PF13855	LRR_8	coord: 1108..1167 e-value: 7.0E-7 score: 28.9
IPR001611	Leucine-rich repeat	PROSITE	PS51450	LRR	coord: 1133..1154 score: 7.25
IPR001611	Leucine-rich repeat	PROSITE	PS51450	LRR	coord: 1061..1082 score: 5.063
IPR001611	Leucine-rich repeat	PROSITE	PS51450	LRR	coord: 1084..1106 score: 5.902
IPR001611	Leucine-rich repeat	PROSITE	PS51450	LRR	coord: 1108..1129 score: 5.171
None	No IPR available	PANTHER	PTHR16083	LEUCINE RICH REPEAT CONTAINING PROTEIN	coord: 1051..1186
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 266..286
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 1..265
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 287..1189
None	No IPR available	SUPERFAMILY	52058	L domain-like	coord: 1053..1188

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
M-pyrifera_M_contig9477	contig	M-pyrifera_M_contig9477:3405..9961 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male	2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90	2022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_M-pyrifera_M_contig9477.21865.1	mRNA_M-pyrifera_M_contig9477.21865.1	Macrocystis pyrifera P11B4 male	mRNA	M-pyrifera_M_contig9477 3405..9961 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_M-pyrifera_M_contig9477.21865.1 ID=prot_M-pyrifera_M_contig9477.21865.1|Name=mRNA_M-pyrifera_M_contig9477.21865.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=1190bp
VARGAGGALEGVEDAALKPALRTLVRALERAARGQGEALWLLYLRLFALL
PGKNEDAVSMVGHALEIFPTSRRIWRLYRYMLRRSDHRQSLSNVIKTYRK
QIAALLLLRGPAAAAAAAASPTPAQASPRAGVGTGTEAADSASKGLRTPG
APGGGGDGGSGGGGGGNHADATVGMIAYLVLECCAALAEAGYTLQAAAEV
LDALGDGKPLRGWDAAEGHEGSSLLRLPLDQSEAGDGGGGGDGGDRELFP
EGVAGALKRARRDLRCLLWLAALHLLVMGVFPQHVLSLAAAAATTDDDND
ADNNNAENDKETRNDCGWRRPDLLLWPKEWLSPEGDAGARLSASAELFEV
ISKTFMSALLDAGLLPPEKGAGKGWAPPLRVRDAVFPSAVEAAAARIAGT
APDVSALEGPPLALALNWLTFCSRGRVGAKGVRMVALACCRRFQLARPDH
PAMLEHLLLEHGVSKARPLGDVYREISSAFDKGGAAAAALRERGEEAPGG
AGDGSSDKRHPPQSSSSSSSFPTGARLQAVYAFLRVVEMRLKAAADAPVK
VSASTAAGAEEEGADIEVARDALQVALVGMWAPAPATTAVLHRWLQEDGE
SQRLAVEGARTSLFRWADVAAHGGAGVVSGEAGPSGGSLSSRYDALSAER
QLSTIVFGLWVLGGASAATDALDHLLSAESFSTISPELRRLAWLQRLETA
VVLSTQQVPGEHAVQGVREVALRALADHRTQRRPEYRTLSHFVASTLDLS
VSGLTNSGDGSSGDGGGGKTEIASAFPFSATASVSSSSSFARDVLTVYAN
RFREVRGGIDWVVVAEALGSSESSAAVAAAASRSSYPPPTDQATAETTCA
LLRWVSWADEPAAAAGPSAAAAESASALRRNARPYAEKALAKHPRDTGLA
CAVAALEASTNRPDRAQRILEAALRVSPHCSTLWEQRVALEAGFGAGSKE
RADSTASAAASTEVLLRLFYGGGRGRVELGALQARTACRVFAAATNPLSR
RQTKSLSLQGALQSPEKPAGAAAAATATTAGSEAGARCEGGGHLLIPAPV
EVPRSVFLLTGLVSLSLANNGLAAVPPAIGRLLCLRSLEVSGNALTALPP
SLSRLSGSLRVLRVARNRLASPLPAAPLTGLVSLRVLDLEQNALSEFPEA
VVLTLTELRSLKLAGNGFPSRAPTGLSDALPHLEDLSLP*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR003591	Leu-rich_rpt_typical-subtyp
IPR032675	LRR_dom_sf
IPR001611	Leu-rich_rpt