prot_M-pyrifera_M_contig94061.21707.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig94061.21707.1
Unique Nameprot_M-pyrifera_M_contig94061.21707.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length67
Homology
BLAST of mRNA_M-pyrifera_M_contig94061.21707.1 vs. uniprot
Match: D8LND0_ECTSI (Replication factor C subunit 1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LND0_ECTSI)

HSP 1 Score: 124 bits (310), Expect = 2.140e-31
Identity = 56/62 (90.32%), Postives = 61/62 (98.39%), Query Frame = 0
Query:    1 QHWELLPAQAALNVRVGSVGGGNLGFPEFPKWLGNYSKENKRRRMLAELSTHLNATISGGTE 62
            QHWELLPAQAALNVRVGSVGGG+LGFPEFPKWLGNYS+ENKRRR+L ELSTHLNA++SGGTE
Sbjct:  778 QHWELLPAQAALNVRVGSVGGGSLGFPEFPKWLGNYSRENKRRRLLGELSTHLNASVSGGTE 839          
BLAST of mRNA_M-pyrifera_M_contig94061.21707.1 vs. uniprot
Match: A0A835YT94_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YT94_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 3.840e-13
Identity = 32/54 (59.26%), Postives = 41/54 (75.93%), Query Frame = 0
Query:    2 HWELLPAQAALNVRVGSVGGGNLGFPEFPKWLGNYSKENKRRRMLAELSTHLNA 55
            HWELLP  AAL++RVG    G +GFP FP+WLG  S   KRRR++AE++TH+NA
Sbjct:  396 HWELLPLYAALHLRVGLECDGYIGFPGFPQWLGKNSAATKRRRLVAEINTHMNA 449          
BLAST of mRNA_M-pyrifera_M_contig94061.21707.1 vs. uniprot
Match: A0A812KXV0_9DINO (Replication factor C subunit 1 n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812KXV0_9DINO)

HSP 1 Score: 65.5 bits (158), Expect = 7.800e-11
Identity = 29/60 (48.33%), Postives = 39/60 (65.00%), Query Frame = 0
Query:    3 WELLPAQAALNVRVGSVGGGNLGFPEFPKWLGNYSKENKRRRMLAELSTHLNATISGGTE 62
            W LL + AA+NV+      G++ FP FP+W G  S   KRRR+L ELS HLN  +SGG++
Sbjct:  646 WSLLTSVAAMNVKAAYHASGSVAFPGFPEWFGKNSTMGKRRRLLGELSMHLNHRVSGGSQ 705          
BLAST of mRNA_M-pyrifera_M_contig94061.21707.1 vs. uniprot
Match: A0A5A8DNM7_CAFRO (Replication factor C subunit 1 n=4 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DNM7_CAFRO)

HSP 1 Score: 58.2 bits (139), Expect = 2.980e-8
Identity = 31/59 (52.54%), Postives = 39/59 (66.10%), Query Frame = 0
Query:    3 WELLPAQAALNVR--VGSVGGGNLGFPEFPKWLGNYSKENKRRRMLAELSTHLNATISG 59
            W LLPA AALNVR  + + GG  +    FP+W    S  NKRRR+LAELSTH++A + G
Sbjct: 1009 WGLLPATAALNVRGALAARGGAKMR-SSFPEWFAKNSTSNKRRRLLAELSTHMSARVWG 1066          
BLAST of mRNA_M-pyrifera_M_contig94061.21707.1 vs. uniprot
Match: A0A1X7VE03_AMPQE (Replication factor C subunit 1 n=2 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7VE03_AMPQE)

HSP 1 Score: 53.9 bits (128), Expect = 9.290e-7
Identity = 26/59 (44.07%), Postives = 35/59 (59.32%), Query Frame = 0
Query:    1 QHWELLPAQAALN-VRVGSVGGGNLGFPEFPKWLGNYSKENKRRRMLAELSTHLNATIS 58
            Q W+LLP QA  + +  G    G +  PEFP+WLGNYSK +K  R+L +L +H     S
Sbjct:  826 QGWQLLPTQAIFSSILPGEYMRGGMSLPEFPQWLGNYSKTSKTDRILQQLVSHSTLNCS 884          
BLAST of mRNA_M-pyrifera_M_contig94061.21707.1 vs. uniprot
Match: A0A7S2QAB8_9DINO (Hypothetical protein (Fragment) n=1 Tax=Brandtodinium nutricula TaxID=1333877 RepID=A0A7S2QAB8_9DINO)

HSP 1 Score: 53.1 bits (126), Expect = 1.710e-6
Identity = 26/54 (48.15%), Postives = 34/54 (62.96%), Query Frame = 0
Query:    1 QHWELLPAQAALN-VRVGSVGGGNLGFPEFPKWLGNYSKENKRRRMLAELSTHL 53
            Q W LLP    ++ V    V  G + FPEFPK+LGNYSK ++ RR+ +EL  HL
Sbjct:  382 QEWSLLPDMGLMSAVHPAFVTSGFVSFPEFPKFLGNYSKMSRARRLCSELEAHL 435          
BLAST of mRNA_M-pyrifera_M_contig94061.21707.1 vs. uniprot
Match: A0A516AGA2_LINPO (Replication factor C subunit 1 (Fragment) n=1 Tax=Lingulodinium polyedra TaxID=160621 RepID=A0A516AGA2_LINPO)

HSP 1 Score: 50.4 bits (119), Expect = 1.510e-5
Identity = 26/59 (44.07%), Postives = 34/59 (57.63%), Query Frame = 0
Query:    3 WELLPAQAALN-VRVGSVGGGNLGFPEFPKWLGNYSKENKRRRMLAELSTHLNATISGG 60
            W LLP+   ++ V    V  G + FPEFPK+LGNYSK ++ RR+  EL  HL      G
Sbjct:  187 WGLLPSMGLVSTVYPAHVTSGFVAFPEFPKFLGNYSKASRARRLCQELHAHLRLASGVG 245          
BLAST of mRNA_M-pyrifera_M_contig94061.21707.1 vs. uniprot
Match: A0A8K0EH48_BRALA (RFC1 protein n=3 Tax=Branchiostoma lanceolatum TaxID=7740 RepID=A0A8K0EH48_BRALA)

HSP 1 Score: 48.9 bits (115), Expect = 5.460e-5
Identity = 27/60 (45.00%), Postives = 36/60 (60.00%), Query Frame = 0
Query:    1 QHWELLPAQAAL-NVRVGSVGGGNL-GFPEFPKWLGNYSKENKRRRMLAELSTHLNATIS 58
            Q W LLP QA   +V  G    G++ G   FP WLG +SK+NK +R+L EL TH++   S
Sbjct:  784 QSWGLLPTQAIYASVLPGEYMRGHMSGMINFPGWLGQFSKQNKLKRILQELHTHMHLRTS 843          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig94061.21707.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D8LND0_ECTSI2.140e-3190.32Replication factor C subunit 1 n=2 Tax=Ectocarpus ... [more]
A0A835YT94_9STRA3.840e-1359.26P-loop containing nucleoside triphosphate hydrolas... [more]
A0A812KXV0_9DINO7.800e-1148.33Replication factor C subunit 1 n=1 Tax=Symbiodiniu... [more]
A0A5A8DNM7_CAFRO2.980e-852.54Replication factor C subunit 1 n=4 Tax=Cafeteria r... [more]
A0A1X7VE03_AMPQE9.290e-744.07Replication factor C subunit 1 n=2 Tax=Amphimedon ... [more]
A0A7S2QAB8_9DINO1.710e-648.15Hypothetical protein (Fragment) n=1 Tax=Brandtodin... [more]
A0A516AGA2_LINPO1.510e-544.07Replication factor C subunit 1 (Fragment) n=1 Tax=... [more]
A0A8K0EH48_BRALA5.460e-545.00RFC1 protein n=3 Tax=Branchiostoma lanceolatum Tax... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013725DNA replication factor RFC1, C-terminalPFAMPF08519RFC1coord: 1..61
e-value: 2.0E-13
score: 50.8
IPR008921DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminalSUPERFAMILY48019post-AAA+ oligomerization domain-likecoord: 1..53

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig94061contigM-pyrifera_M_contig94061:90..290 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig94061.21707.1mRNA_M-pyrifera_M_contig94061.21707.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig94061 90..290 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig94061.21707.1 ID=prot_M-pyrifera_M_contig94061.21707.1|Name=mRNA_M-pyrifera_M_contig94061.21707.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=67bp
QHWELLPAQAALNVRVGSVGGGNLGFPEFPKWLGNYSKENKRRRMLAELS
THLNATISGGTEVRPA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013725DNA_replication_fac_RFC1_C
IPR008921DNA_pol3_clamp-load_cplx_C