prot_M-pyrifera_M_contig9362.21622.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig9362.21622.1
Unique Nameprot_M-pyrifera_M_contig9362.21622.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length108
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig9362.21622.1 vs. uniprot
Match: A0A6H5LPC9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LPC9_9PHAE)

HSP 1 Score: 104 bits (260), Expect = 1.110e-25
Identity = 58/111 (52.25%), Postives = 72/111 (64.86%), Query Frame = 0 
Query:    1 GAGLVVVVTFFLSIIACIVCHMKRKERRAFRKRNAPVDGRPKAIRYVDPWGSVARTFQDK----PAPNGRGPGSTNGSQMGGQXXXXXXXXXXXXVPHPHGSQTAQSSASA 107
            GAGLVVVV+FFLSI+ACIVCHMKR++R+ F++RN   DGRPK + YVDPWGSVARTFQ      P+P+  G  S+ G    G                 +GS+TA SS+SA
Sbjct:  122 GAGLVVVVSFFLSIVACIVCHMKRRDRKEFKRRNQSEDGRPKPVAYVDPWGSVARTFQKDGAKAPSPSANGGESSRGGSRVGNGSSAGGYGR-------NGSRTADSSSSA 225
[Close]
BLAST of mRNA_M-pyrifera_M_contig9362.21622.1 vs. uniprot
Match: D8LHQ5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHQ5_ECTSI)

HSP 1 Score: 106 bits (264), Expect = 1.890e-24
Identity = 61/111 (54.95%), Postives = 74/111 (66.67%), Query Frame = 0 
Query:    1 GAGLVVVVTFFLSIIACIVCHMKRKERRAFRKRNAPVDGRPKAIRYVDPWGSVARTFQDK----PAPNGRGPGSTNGSQMGGQXXXXXXXXXXXXVPHPHGSQTAQSSASA 107
            GAGLVVVV+FFLSI+ACIVCHMKR++R+ F++RN   DGRPK + YVDPWGSVA TFQ      P+P+  G GS+ G    G     XX          +GS+TA SSASA
Sbjct: 1088 GAGLVVVVSFFLSIVACIVCHMKRRDRKEFKRRNQGEDGRPKPVAYVDPWGSVATTFQKDGAKAPSPSANGGGSSRGGSRVGNGSSAXXYGR-------NGSRTADSSASA 1191
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig9362.21622.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5LPC9_9PHAE1.110e-2552.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LHQ5_ECTSI1.890e-2454.95Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..5
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 6..23
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 24..107
NoneNo IPR availableTMHMMTMhelixcoord: 4..22

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig9362contigM-pyrifera_M_contig9362:1155..6312 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig9362.21622.1mRNA_M-pyrifera_M_contig9362.21622.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig9362 1155..6312 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig9362.21622.1 ID=prot_M-pyrifera_M_contig9362.21622.1|Name=mRNA_M-pyrifera_M_contig9362.21622.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=108bp
GAGLVVVVTFFLSIIACIVCHMKRKERRAFRKRNAPVDGRPKAIRYVDPW
GSVARTFQDKPAPNGRGPGSTNGSQMGGQGGTNGSQMGGQGVPHPHGSQT
AQSSASA*
back to top