prot_M-pyrifera_M_contig9055.20997.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_M-pyrifera_M_contig9055.20997.1
Unique Name	prot_M-pyrifera_M_contig9055.20997.1
Type	polypeptide
Organism	Macrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length	113

Homology

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BLAST of mRNA_M-pyrifera_M_contig9055.20997.1 vs. uniprot
Match: A0A091JB72_EGRGA (Ubiquitin carboxyl-terminal hydrolase 42 (Fragment) n=1 Tax=Egretta garzetta TaxID=188379 RepID=A0A091JB72_EGRGA)

HSP 1 Score: 52.8 bits (125), Expect = 1.110e-5
Identity = 35/101 (34.65%), Postives = 54/101 (53.47%), Query Frame = 0

Query:   10 DAFTKRKKLAYLVTVPTALDVGSHTEAGRASGGEVMYDLDTVVHHTSRDRQQGDVEMQKGHYKVYTRISDDKWCRCDDENVSTVHAFAVLTEDAFTLSYAK 110
            D FT RK +  LV  P  LD+  +T   +A+G  ++Y L  V+ H      +GD   ++GHY  YT+ S+ +W + DDE+V       VL + A+ L Y +
Sbjct:  224 DDFTGRK-ITQLVKYPENLDLRPYTS--QAAGEPLLYALYAVLVH------RGD-SCREGHYFCYTKASNGRWYKMDDESVHGCRIGTVLRQQAYLLFYVR 314

The following BLAST results are available for this feature:

BLAST of mRNA_M-pyrifera_M_contig9055.20997.1 vs. uniprot

BLAST of mRNA_M-pyrifera_M_contig9055.20997.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A091JB72_EGRGA	1.110e-5	34.65	Ubiquitin carboxyl-terminal hydrolase 42 (Fragment...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001394	Peptidase C19, ubiquitin carboxyl-terminal hydrolase	PFAM	PF00443	UCH	coord: 2..108 e-value: 5.8E-11 score: 42.4
None	No IPR available	GENE3D	3.90.70.10		coord: 1..112 e-value: 2.1E-18 score: 68.7
None	No IPR available	PANTHER	PTHR21646	FAMILY NOT NAMED	coord: 2..111
IPR028889	Ubiquitin specific protease domain	PROSITE	PS50235	USP_3	coord: 1..111 score: 16.17
IPR038765	Papain-like cysteine peptidase superfamily	SUPERFAMILY	54001	Cysteine proteinases	coord: 2..110

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
M-pyrifera_M_contig9055	contig	M-pyrifera_M_contig9055:8207..10191 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male	2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90	2022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_M-pyrifera_M_contig9055.20997.1	mRNA_M-pyrifera_M_contig9055.20997.1	Macrocystis pyrifera P11B4 male	mRNA	M-pyrifera_M_contig9055 7942..10230 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_M-pyrifera_M_contig9055.20997.1 ID=prot_M-pyrifera_M_contig9055.20997.1|Name=mRNA_M-pyrifera_M_contig9055.20997.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=113bp
MLQLGRFSGDAFTKRKKLAYLVTVPTALDVGSHTEAGRASGGEVMYDLDT
VVHHTSRDRQQGDVEMQKGHYKVYTRISDDKWCRCDDENVSTVHAFAVLT
EDAFTLSYAKRA*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001394	Peptidase_C19_UCH
IPR028889	USP_dom
IPR038765	Papain-like_cys_pep_sf