prot_M-pyrifera_M_contig8840.20530.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_M-pyrifera_M_contig8840.20530.1
Unique Name	prot_M-pyrifera_M_contig8840.20530.1
Type	polypeptide
Organism	Macrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length	336

Homology

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BLAST of mRNA_M-pyrifera_M_contig8840.20530.1 vs. uniprot
Match: A0A6H5L6Q0_9PHAE (Rab-GAP TBC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6Q0_9PHAE)

HSP 1 Score: 360 bits (923), Expect = 1.070e-114
Identity = 212/358 (59.22%), Postives = 240/358 (67.04%), Query Frame = 0

Query:    2 GLSVRRLVGDYQRLVCSSDAHNDGA---GSSKADKLLAVRVWEDVDRTMSPR-HTGRSGQISASLRGGGGYGCPAHFTEGSRHAVFRVAYATASTLQLVSGMSYMAALALVQEPAEAIAYANLVTLLQGRKMRLLYPLGDVDLLDAYHLCGGRVVTFRA---------------ASIGHNAHDFGAERGVRRG---SRSATEGVGVNVRDHGDGLLDGD-VDRRAGREFLERGEEPTKQVVVGKLLPRLVRAFGRALKRRLPTLHKHLCTHAIPMSFLCVEWFTTAYARNTPLPLALCAFDLFSVHLEDGMIRLGLGILEVLAPSLQALNSKEILLQYGGLTANVCFRDVLRRVLATQ 336
            GL   +L  +YQRL+ S       +   G +KA + LA +VW+DV+RTMSPR H  R G  SAS  GGGG+ CPAHF  GS+HAVFRVA+ATASTLQ VSGMSYMAAL LVQEP EA+AYA LVTLLQ      L+PLGDVDLLDAYHLCGGRVVTFRA                  G   + F  +  +R     +RS     G   +D    + D D  DR  G E  E  EE    VVV ++LPRLVR FG+ALKRRLP LH HLC  A+PMSFLC EWFTTAYARNTPLPLALCA DLF V L+D MIRLGL ILEVLAPSL+ LN  EILLQYG LTANV F++VLR  LATQ
Sbjct:  449 GLVKCKLRNNYQRLISSRKGLRKSSNTDGCNKAKRALAAKVWKDVNRTMSPRRHGARPGFFSASQLGGGGHVCPAHFAGGSKHAVFRVAFATASTLQFVSGMSYMAALVLVQEPVEAMAYATLVTLLQA-----LFPLGDVDLLDAYHLCGGRVVTFRAFGAARSPTPSEAAARGESGDGQYPFPGQGHLRMAEGDTRSKVVSAGSLRKDKATTIRDTDGADRACGWEIGELEEE----VVVDEMLPRLVRIFGKALKRRLPALHGHLCKEAVPMSFLCAEWFTTAYARNTPLPLALCALDLFLVRLDDVMIRLGLAILEVLAPSLKTLNGLEILLQYGNLTANVSFQEVLRCALATQ 797

[Close]

BLAST of mRNA_M-pyrifera_M_contig8840.20530.1 vs. uniprot
Match: D7FQL0_ECTSI (Rab-GAP TBC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQL0_ECTSI)

HSP 1 Score: 330 bits (846), Expect = 3.950e-103
Identity = 196/332 (59.04%), Postives = 223/332 (67.17%), Query Frame = 0

Query:   27 GSSKADKLLAVR--VWEDVDRTMSP-RHTGRSGQISASLRGGGGYGCPAHFTEGSRHAVFRVAYATASTLQLVSGMSYMAALALVQEPAEAIAYANLVTLLQGRKMRLLYPLGDVDLLDAYHLCGGRVVTFRA---------------ASIGHNAHDF---GAERGVRRGSRSATEGVGVNVRDHGDGLLD-GDVDRRAGREFLERGEEPTKQVVVGKLLPRLVRAFGRALKRRLPTLHKHLCTHAIPMSFLCVEWFTTAYARNTPLPLALCAFDLFSVHLEDGMIRLGLGILEVLAPSLQALNSKEILLQYGGLTANVCFRDVLRRVLATQ 336
            G  +  +L+A R  +W+ + R +SP  H+ RSG        GGG+ CPAHF  G++HAVFRVA+ATASTLQ VSG+SYMAAL LVQEP EA+AYA LVTLLQ R M+ L+PLGDVDLLDAYHLCGGRVVTFRA                  G   + F   G  R     +RS     G    D    + D G  DR  G +  E  EE    VVVG++LPRLVR FG+ALKRRLP LH HLC  AIPMSFLC EWFTTAYARNTPLPLALCA DLF V L+D MIRLGL ILEVLAPSL+ LN  EILLQYG LTANV F++VLR  LATQ
Sbjct:  478 GMEQWHELVASRGHLWQRLLRNLSPDSHSDRSG--------GGGHVCPAHFAGGAKHAVFRVAFATASTLQFVSGISYMAALVLVQEPLEAMAYATLVTLLQERVMQALFPLGDVDLLDAYHLCGGRVVTFRAFGAARSPTPSEPAARGKSGDGQYPFRGQGHRRMAEGDTRSKVVSAGSPREDKATTIRDTGGADRACGWQMGELEEE----VVVGEMLPRLVRIFGKALKRRLPALHGHLCKEAIPMSFLCAEWFTTAYARNTPLPLALCALDLFLVRLDDVMIRLGLAILEVLAPSLKMLNGLEILLQYGNLTANVSFQEVLRCALATQ 797

The following BLAST results are available for this feature:

BLAST of mRNA_M-pyrifera_M_contig8840.20530.1 vs. uniprot

BLAST of mRNA_M-pyrifera_M_contig8840.20530.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A6H5L6Q0_9PHAE	1.070e-114	59.22	Rab-GAP TBC domain-containing protein n=1 Tax=Ecto...	[more]
D7FQL0_ECTSI	3.950e-103	59.04	Rab-GAP TBC domain-containing protein n=1 Tax=Ecto...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000195	Rab-GTPase-TBC domain	PFAM	PF00566	RabGAP-TBC	coord: 225..302 e-value: 4.2E-9 score: 36.4
IPR000195	Rab-GTPase-TBC domain	PROSITE	PS50086	TBC_RABGAP	coord: 1..285 score: 10.712
None	No IPR available	GENE3D	1.10.472.80		coord: 218..336 e-value: 3.3E-17 score: 64.5
IPR035969	Rab-GTPase-TBC domain superfamily	SUPERFAMILY	47923	Ypt/Rab-GAP domain of gyp1p	coord: 224..313

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
M-pyrifera_M_contig8840	contig	M-pyrifera_M_contig8840:6822..11164 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male	2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90	2022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_M-pyrifera_M_contig8840.20530.1	mRNA_M-pyrifera_M_contig8840.20530.1	Macrocystis pyrifera P11B4 male	mRNA	M-pyrifera_M_contig8840 6822..11173 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_M-pyrifera_M_contig8840.20530.1 ID=prot_M-pyrifera_M_contig8840.20530.1|Name=mRNA_M-pyrifera_M_contig8840.20530.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=336bp
MGLSVRRLVGDYQRLVCSSDAHNDGAGSSKADKLLAVRVWEDVDRTMSPR
HTGRSGQISASLRGGGGYGCPAHFTEGSRHAVFRVAYATASTLQLVSGMS
YMAALALVQEPAEAIAYANLVTLLQGRKMRLLYPLGDVDLLDAYHLCGGR
VVTFRAASIGHNAHDFGAERGVRRGSRSATEGVGVNVRDHGDGLLDGDVD
RRAGREFLERGEEPTKQVVVGKLLPRLVRAFGRALKRRLPTLHKHLCTHA
IPMSFLCVEWFTTAYARNTPLPLALCAFDLFSVHLEDGMIRLGLGILEVL
APSLQALNSKEILLQYGGLTANVCFRDVLRRVLATQ

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000195	Rab-GTPase-TBC_dom
IPR035969	Rab-GTPase_TBC_sf