prot_M-pyrifera_M_contig88126.20470.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig88126.20470.1
Unique Nameprot_M-pyrifera_M_contig88126.20470.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length188
Homology
BLAST of mRNA_M-pyrifera_M_contig88126.20470.1 vs. uniprot
Match: B3RL10_TRIAD (U1 small nuclear ribonucleoprotein 70 kDa n=2 Tax=Trichoplax TaxID=10227 RepID=B3RL10_TRIAD)

HSP 1 Score: 143 bits (360), Expect = 3.540e-38
Identity = 82/191 (42.93%), Postives = 116/191 (60.73%), Query Frame = 0
Query:    1 LRPLFDPGPKPKFIPP---PPKRVERREYGGVSSLVARLKALPRAVPSAPVELARDARARVKRERAAAVSRKVAEERAKWDPRQADEKKTKNPWATVLLARLSYETTERQVRAAMGRYGSVVGVRMVEDLEGKPTGRAFVEFSEPGEARRAFDEARGLVLGGKRVLVDVERGRTDPKWVPRRFGGGLGTTR 188
            L   F P    K++PP   P    +RR Y GVS  +++ + +  + PS   E   + R R K+ER   VS K+ ++ A+WDP   + K T++P+ T+L++RLSY+TTE ++R  +  YGSV  VR + DL GKP G AFVEF    + + A+  A G  + G+R+LVDVER RT   W+PRR GGGLG TR
Sbjct:    9 LSAFFTPKEPIKYLPPLDTPSHLRKRRPYTGVSVFLSQFETVRNSAPSVVTETREEKRTRQKKERLDKVSAKLQKDLAQWDPHN-NPKGTEDPFKTLLVSRLSYDTTESKLRRELEAYGSVKSVRSIYDLSGKPKGYAFVEFEHERDMKAAYKYADGKKVDGRRILVDVERSRTVKNWLPRRLGGGLGGTR 198          
BLAST of mRNA_M-pyrifera_M_contig88126.20470.1 vs. uniprot
Match: A0A6G0M502_9STRA (RRM domain-containing protein n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0M502_9STRA)

HSP 1 Score: 138 bits (348), Expect = 2.980e-37
Identity = 82/194 (42.27%), Postives = 117/194 (60.31%), Query Frame = 0
Query:    1 LRPLFDPGPKPKFIPPPPKRVERREYGGVSSLVARLKAL------PRAVPSAPVELARDARARVKRERAAAVSRKVAEERAKWDPRQADEKKTKNPWATVLLARLSYETTERQVRAAMGRYGSVVGVRMVEDLEGKPTGRAFVEFSEPGEARRAFDEARGLVLGGKRVLVDVERGRTDPKWVPRRFGGGLGTTR 188
            L+ +F+P      +P    R+ +R+    + L A L A       PRAV   P E     R R ++E+ AAV  K+ E+RAKWDP   D +KT++ + T+ + R+SYETTE+Q+R    +YG V  VR+VED EGK  G  FVE+ +  + + A+  A G  + G+RV+VDVERGRT   W+PR+FGGG+G TR
Sbjct:   32 LKVMFEPNAPLDHLP----RLVKRKMPPYTGLAAFLDAFESETPPPRAVQETPKER----RERRRQEKMAAVEAKMQEDRAKWDPNAEDPRKTQDAYKTLFVGRISYETTEQQLRHEFEQYGPVKSVRLVEDPEGKSRGYGFVEYEKEEDMKAAYKYADGKKIDGRRVVVDVERGRTVRDWLPRKFGGGIGETR 217          
BLAST of mRNA_M-pyrifera_M_contig88126.20470.1 vs. uniprot
Match: A0A6A3TRP9_9STRA (RRM domain-containing protein n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3TRP9_9STRA)

HSP 1 Score: 138 bits (348), Expect = 3.380e-37
Identity = 82/194 (42.27%), Postives = 117/194 (60.31%), Query Frame = 0
Query:    1 LRPLFDPGPKPKFIPPPPKRVERREYGGVSSLVARLKAL------PRAVPSAPVELARDARARVKRERAAAVSRKVAEERAKWDPRQADEKKTKNPWATVLLARLSYETTERQVRAAMGRYGSVVGVRMVEDLEGKPTGRAFVEFSEPGEARRAFDEARGLVLGGKRVLVDVERGRTDPKWVPRRFGGGLGTTR 188
            L+ +F+P      +P    R+ +R+    + L A L A       PRAV   P E     R R ++E+ AAV  K+ E+RAKWDP   D +KT++ + T+ + R+SYETTE+Q+R    +YG V  VR+VED EGK  G  FVE+ +  + + A+  A G  + G+RV+VDVERGRT   W+PR+FGGG+G TR
Sbjct:   32 LKVMFEPNAPLDHLP----RLVKRKMPPYTGLAAFLDAFESETPPPRAVQETPKER----RERRRQEKMAAVEAKMQEDRAKWDPNAEDPRKTQDAYKTLFVGRISYETTEQQLRHEFEQYGPVKSVRLVEDPEGKSRGYGFVEYEKEEDMKAAYKYADGKKIDGRRVVVDVERGRTVRDWLPRKFGGGIGETR 217          
BLAST of mRNA_M-pyrifera_M_contig88126.20470.1 vs. uniprot
Match: A0A2D4BHZ3_PYTIN (RRM domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BHZ3_PYTIN)

HSP 1 Score: 138 bits (347), Expect = 2.560e-36
Identity = 78/191 (40.84%), Postives = 118/191 (61.78%), Query Frame = 0
Query:    1 LRPLFDPGPKPKFIPPPPKRVERREYGGVSSLVARLKAL---PRAVPSAPVELARDARARVKRERAAAVSRKVAEERAKWDPRQADEKKTKNPWATVLLARLSYETTERQVRAAMGRYGSVVGVRMVEDLEGKPTGRAFVEFSEPGEARRAFDEARGLVLGGKRVLVDVERGRTDPKWVPRRFGGGLGTTR 188
            L+ LF+P      +P   KR +   Y GV+  VA+ +     PR +   P E     +AR+++E+AA +  K+  E +KWDP+ ADE+KT + + T+ + R+SYETTE+Q+R    +YG V  +R+VED +GK  G AF+E+    + + A+ +A G  + G+RV+VDVERGRT   W PR+ GGG+G TR
Sbjct:   29 LKALFEPNAPLPHLPQLTKR-KMPPYSGVTDFVAQFETEAPPPRVLNETPKER----QARLQKEKAAEMEAKLQAEISKWDPQHADERKTDDAYKTLFVGRISYETTEKQLRQEFEQYGPVKKIRLVEDEDGKSRGYAFIEYERESDMKAAYKQADGKKIDGRRVVVDVERGRTVRDWKPRKLGGGIGETR 214          
BLAST of mRNA_M-pyrifera_M_contig88126.20470.1 vs. uniprot
Match: A0A6A3P5Z3_9STRA (RRM domain-containing protein n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3P5Z3_9STRA)

HSP 1 Score: 137 bits (346), Expect = 2.720e-36
Identity = 82/194 (42.27%), Postives = 116/194 (59.79%), Query Frame = 0
Query:    1 LRPLFDPGPKPKFIPPPPKRVERREYGGVSSLVARLKAL------PRAVPSAPVELARDARARVKRERAAAVSRKVAEERAKWDPRQADEKKTKNPWATVLLARLSYETTERQVRAAMGRYGSVVGVRMVEDLEGKPTGRAFVEFSEPGEARRAFDEARGLVLGGKRVLVDVERGRTDPKWVPRRFGGGLGTTR 188
            L+ +F+P      +P    R+ +R+    + L A L A       PRAV   P E     R R ++E+ AAV  K   +RAKWDP   D +KT++ + T+ + R+SYETTE+Q+R    +YGSV  VR+VED EGK  G  FVE+ +  + + A+  A G  + G+RV+VDVERGRT   W+PR+FGGG+G TR
Sbjct:   32 LKVMFEPNAPLDHLP----RLVKRKMTPYTGLAAFLDAFESETPPPRAVQETPKER----RERRRKEKMAAVEAKTQVDRAKWDPNAEDPRKTQDAYKTLFVGRISYETTEQQLRHEFEQYGSVKSVRLVEDPEGKSRGYGFVEYEKEEDMKAAYKYADGKKIDGRRVVVDVERGRTVRDWLPRKFGGGIGETR 217          
BLAST of mRNA_M-pyrifera_M_contig88126.20470.1 vs. uniprot
Match: A0A0P1AIA1_PLAHL (U1 snrnp 70k protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AIA1_PLAHL)

HSP 1 Score: 137 bits (345), Expect = 3.580e-36
Identity = 76/190 (40.00%), Postives = 115/190 (60.53%), Query Frame = 0
Query:    1 LRPLFDPGPKPKFIPPPPKRVERREYGGVSSLVARLKALPRAVPS--APVELARDARARVKRERAAAVSRKVAEERAKWDPRQADEKKTKNPWATVLLARLSYETTERQVRAAMGRYGSVVGVRMVEDLEGKPTGRAFVEFSEPGEARRAFDEARGLVLGGKRVLVDVERGRTDPKWVPRRFGGGLGTTR 188
            L+ LF+P P    +P    R+ +R+    + L   L       P   A +E  ++ + R ++E+  A   KV E+RAKWDP   D +KT++ + T+ + R+SYETTE+Q+R    +YGS+  VR+VED EGK  G  F+E+ +  + + A+  A G  + G+RV+VDVERGRT   W+PR+FGGG+G TR
Sbjct:   32 LKVLFEPNPPLDHLP----RLVKRKMPPYTGLAGFLDVFETETPPPRAVMETPKERQERRRQEKMLANDAKVQEDRAKWDPNAEDPRKTQDAYKTLFVGRISYETTEQQLRHEFEQYGSIKSVRLVEDAEGKSRGYGFIEYEKEADLKAAYKYADGKKIDGRRVVVDVERGRTVRDWLPRKFGGGIGETR 217          
BLAST of mRNA_M-pyrifera_M_contig88126.20470.1 vs. uniprot
Match: A0A8K1CMI4_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CMI4_PYTOL)

HSP 1 Score: 137 bits (344), Expect = 5.740e-36
Identity = 77/191 (40.31%), Postives = 116/191 (60.73%), Query Frame = 0
Query:    1 LRPLFDPGPKPKFIPPPPKRVERREYGGVSSLVARLKAL---PRAVPSAPVELARDARARVKRERAAAVSRKVAEERAKWDPRQADEKKTKNPWATVLLARLSYETTERQVRAAMGRYGSVVGVRMVEDLEGKPTGRAFVEFSEPGEARRAFDEARGLVLGGKRVLVDVERGRTDPKWVPRRFGGGLGTTR 188
            L+ LF+P P  + +P   KR +   Y G++      +     PR V   P E     R RV++E+  A   ++     KWDP+ ADE+KT++ + T+ + R+SYETTE+Q+R    +YG V  +R++ED EGK  G AFVE+ +  + + A+ +A G  + G+RV+VDVERGRT  +W PR+FGGG+G TR
Sbjct:   29 LKALFEPNPPLEHLPQLTKR-KMPPYSGLTEFAETFETAQPPPREVSETPKER----RERVRKEKVEAHEAQLQANLEKWDPQAADERKTEDAYKTLFVGRISYETTEKQLRQEFEQYGPVKKIRLIEDEEGKSRGYAFVEYEKESDMKVAYKQADGKKIDGRRVVVDVERGRTVREWKPRKFGGGIGETR 214          
BLAST of mRNA_M-pyrifera_M_contig88126.20470.1 vs. uniprot
Match: W2QZU5_PHYPN (RRM domain-containing protein n=11 Tax=Phytophthora TaxID=4783 RepID=W2QZU5_PHYPN)

HSP 1 Score: 136 bits (343), Expect = 7.560e-36
Identity = 79/193 (40.93%), Postives = 119/193 (61.66%), Query Frame = 0
Query:    1 LRPLFDPGPKPKFIPPPPKRVERR--EYGGVSSLVARLKAL---PRAVPSAPVELARDARARVKRERAAAVSRKVAEERAKWDPRQADEKKTKNPWATVLLARLSYETTERQVRAAMGRYGSVVGVRMVEDLEGKPTGRAFVEFSEPGEARRAFDEARGLVLGGKRVLVDVERGRTDPKWVPRRFGGGLGTTR 188
            L+ +F+P P    +P   + V+R+   Y G++  +   +++   PR V   P E     R R ++E+ AA   K+ E+RAKWDP   D +KTK+ + T+ + R+SYETTE+Q+R    +YG V  VR+VED EGK  G  FVE+ +  + + A+  A G  + G+RV+VDVERGRT   W+P++FGGG+G TR
Sbjct:   32 LKVMFEPNPPLDHLP---RLVKRKMPPYTGLAGFLDVFESVNPPPRDVQETPKER----RERRRQEKMAANDAKMQEDRAKWDPNAEDPRKTKDAYKTLFVGRISYETTEQQLRHEFEQYGPVKSVRLVEDSEGKSRGYGFVEYEKEADMKSAYKYADGKKIDGRRVVVDVERGRTVTDWLPKKFGGGIGETR 217          
BLAST of mRNA_M-pyrifera_M_contig88126.20470.1 vs. uniprot
Match: A0A6G0XTE6_9STRA (RRM domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XTE6_9STRA)

HSP 1 Score: 136 bits (342), Expect = 1.500e-35
Identity = 76/192 (39.58%), Postives = 116/192 (60.42%), Query Frame = 0
Query:    1 LRPLFDPGPKPKFIPPPPKRVERREYGGVSSLVARLKAL---PRAVPSAPVELARDARARVKRERAAAVSRKVAEERAKWDPRQADEK-KTKNPWATVLLARLSYETTERQVRAAMGRYGSVVGVRMVEDLEGKPTGRAFVEFSEPGEARRAFDEARGLVLGGKRVLVDVERGRTDPKWVPRRFGGGLGTTR 188
            ++ LF+P P  ++IPPP KR +   Y G++ ++   +     PR V   P    +  + R++ E+ A   +K+ E+R KWDP     K KT++ + T+ + R+SYETTE+Q+R    RYG +V +R+VED EGK  G AF+E+ +    + A+  A G  + G+RV+VDVERGRT   W PR+ G G+G TR
Sbjct:   43 MKVLFEPRPPIEYIPPPVKR-KMPPYTGIAEVINEFEVTEPPPRTVSETP----KQRKDRIRNEKLALNQKKLEEDREKWDPHAVTSKPKTEDAYKTLFVGRISYETTEKQLRREFERYGDIVSIRLVEDDEGKFRGYAFIEYKDESAMKAAYKHADGKKIDGRRVVVDVERGRTVRDWKPRKLGCGIGDTR 229          
BLAST of mRNA_M-pyrifera_M_contig88126.20470.1 vs. uniprot
Match: A0A024TSZ8_9STRA (RRM domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TSZ8_9STRA)

HSP 1 Score: 135 bits (340), Expect = 1.650e-35
Identity = 78/189 (41.27%), Postives = 116/189 (61.38%), Query Frame = 0
Query:    1 LRPLFDPGPKPKFIPPPPKRVERREYGGVSSLVARLKALPRAVPSAPVELARDARARVKRERAAAVSRKVAEERAKWDPRQADEK-KTKNPWATVLLARLSYETTERQVRAAMGRYGSVVGVRMVEDLEGKPTGRAFVEFSEPGEARRAFDEARGLVLGGKRVLVDVERGRTDPKWVPRRFGGGLGTTR 188
            ++ LF+P P  ++I PP KR +   Y G+S  +   ++    V     E  R  + RV++E+ A   +K+AE  A WDP+    K KT++ + T+ + R+SYETTE+Q+R    RYG +V +R+VED +GK  G AFVE+ + G  + A+  A G  + G+RV+VDVERGRT   W PR+ GGG+G TR
Sbjct:   17 MKVLFEPRPPIEYIAPPVKR-KMPPYTGISDSLPEFESTTPPVRHVS-ETPRQRQDRVRQEKLAIYQKKLAENIAAWDPQAPSSKQKTEDAYKTLFVGRISYETTEKQLRREFERYGDIVNLRLVEDDDGKCRGYAFVEYKDEGAMKAAYKNADGKKIDGRRVVVDVERGRTVRDWKPRKLGGGIGDTR 203          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig88126.20470.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
B3RL10_TRIAD3.540e-3842.93U1 small nuclear ribonucleoprotein 70 kDa n=2 Tax=... [more]
A0A6G0M502_9STRA2.980e-3742.27RRM domain-containing protein n=1 Tax=Phytophthora... [more]
A0A6A3TRP9_9STRA3.380e-3742.27RRM domain-containing protein n=1 Tax=Phytophthora... [more]
A0A2D4BHZ3_PYTIN2.560e-3640.84RRM domain-containing protein n=1 Tax=Pythium insi... [more]
A0A6A3P5Z3_9STRA2.720e-3642.27RRM domain-containing protein n=1 Tax=Phytophthora... [more]
A0A0P1AIA1_PLAHL3.580e-3640.00U1 snrnp 70k protein n=1 Tax=Plasmopara halstedii ... [more]
A0A8K1CMI4_PYTOL5.740e-3640.31Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
W2QZU5_PHYPN7.560e-3640.93RRM domain-containing protein n=11 Tax=Phytophthor... [more]
A0A6G0XTE6_9STRA1.500e-3539.58RRM domain-containing protein n=1 Tax=Aphanomyces ... [more]
A0A024TSZ8_9STRA1.650e-3541.27RRM domain-containing protein n=1 Tax=Aphanomyces ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 93..165
e-value: 1.9E-16
score: 70.6
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 97..162
e-value: 1.5E-12
score: 47.1
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 92..169
score: 15.067
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 78..188
e-value: 4.3E-22
score: 80.6
IPR022023U1 small nuclear ribonucleoprotein of 70kDa N-terminalPFAMPF12220U1snRNP70_Ncoord: 3..81
e-value: 2.6E-9
score: 37.6
NoneNo IPR availablePANTHERPTHR13952U1 SMALL NUCLEAR RIBONUCLEOPROTEIN 70 KDcoord: 3..188
IPR040252U1 small nuclear ribonucleoprotein 70kDaPANTHERPTHR13952:SF5U1 SMALL NUCLEAR RIBONUCLEOPROTEIN 70 KDAcoord: 3..188
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 82..186

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig88126contigM-pyrifera_M_contig88126:23..586 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig88126.20470.1mRNA_M-pyrifera_M_contig88126.20470.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig88126 23..586 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig88126.20470.1 ID=prot_M-pyrifera_M_contig88126.20470.1|Name=mRNA_M-pyrifera_M_contig88126.20470.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=188bp
LRPLFDPGPKPKFIPPPPKRVERREYGGVSSLVARLKALPRAVPSAPVEL
ARDARARVKRERAAAVSRKVAEERAKWDPRQADEKKTKNPWATVLLARLS
YETTERQVRAAMGRYGSVVGVRMVEDLEGKPTGRAFVEFSEPGEARRAFD
EARGLVLGGKRVLVDVERGRTDPKWVPRRFGGGLGTTR
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
IPR022023U1snRNP70_N
IPR040252SNRNP70
IPR035979RBD_domain_sf