prot_M-pyrifera_M_contig776.18259.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig776.18259.1
Unique Nameprot_M-pyrifera_M_contig776.18259.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length70
Homology
BLAST of mRNA_M-pyrifera_M_contig776.18259.1 vs. uniprot
Match: D7G710_ECTSI (General transcription and DNA repair factor IIH subunit TFB5 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G710_ECTSI)

HSP 1 Score: 132 bits (331), Expect = 5.670e-39
Identity = 64/69 (92.75%), Postives = 68/69 (98.55%), Query Frame = 0
Query:    1 MSTGFRSSKGVIITCDVPTKQFILSLDARLACVVSDLDATHVFVKKDSVKEIQRELDALHEKNVYVRPR 69
            MSTG+RSSKGV+ITCDVPTKQFI+SLDARLACVVSDLDATHVFVKKDSVKEIQREL+ LHEKNVYVRPR
Sbjct:    1 MSTGYRSSKGVLITCDVPTKQFIMSLDARLACVVSDLDATHVFVKKDSVKEIQRELEQLHEKNVYVRPR 69          
BLAST of mRNA_M-pyrifera_M_contig776.18259.1 vs. uniprot
Match: A0A835ZC95_9STRA (General transcription and DNA repair factor IIH subunit TFB5 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZC95_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 4.420e-16
Identity = 38/69 (55.07%), Postives = 51/69 (73.91%), Query Frame = 0
Query:    1 MSTGFRSSKGVIITCDVPTKQFILSLDARLA--CVVSDLDATHVFVKKDSVKEIQRELDALHEKNVYVR 67
            MS    S KGV+ITCDVPTKQFIL L+++ A   +++DLD TH+FV+  +V EI+ +L+ L E NVYVR
Sbjct:    1 MSNVRTSRKGVLITCDVPTKQFILHLNSKQAQGFIINDLDETHLFVEASAVHEIREQLERLQEMNVYVR 69          
BLAST of mRNA_M-pyrifera_M_contig776.18259.1 vs. uniprot
Match: A0A2V3IN38_9FLOR (General transcription and DNA repair factor IIH subunit TFB5 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IN38_9FLOR)

HSP 1 Score: 59.3 bits (142), Expect = 1.060e-9
Identity = 27/62 (43.55%), Postives = 44/62 (70.97%), Query Frame = 0
Query:    7 SSKGVIITCDVPTKQFILSLDARLA--CVVSDLDATHVFVKKDSVKEIQRELDALHEKNVYV 66
            ++ GV+I+CD+P KQF+L +D +     ++SDLD THV VK+ ++  I+ +LD L+E+N Y 
Sbjct:   50 ATAGVLISCDIPVKQFLLHVDEKDTGKFIISDLDETHVLVKESALDYIKSQLDKLYEENQYT 111          
BLAST of mRNA_M-pyrifera_M_contig776.18259.1 vs. uniprot
Match: A0A6T6HXU1_9STRA (General transcription and DNA repair factor IIH subunit TFB5 n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A6T6HXU1_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 1.590e-8
Identity = 28/63 (44.44%), Postives = 43/63 (68.25%), Query Frame = 0
Query:    7 SSKGVIITCDVPTKQFILSLDARLAC----VVSDLDATHVFVKKDSVKEIQRELDALHEKNVY 65
            +S G +ITCDVPTKQ+I  L+   A     ++ DLDATH+ VKK +  EI+R +++  ++NV+
Sbjct:   36 ASAGYLITCDVPTKQYIQYLNEMKAVDKKFIIEDLDATHLLVKKKARAEIERRVESWMDENVF 98          
BLAST of mRNA_M-pyrifera_M_contig776.18259.1 vs. uniprot
Match: M2VWH3_GALSU (General transcription and DNA repair factor IIH subunit TFB5 n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2VWH3_GALSU)

HSP 1 Score: 55.1 bits (131), Expect = 1.710e-8
Identity = 28/63 (44.44%), Postives = 45/63 (71.43%), Query Frame = 0
Query:    9 KGVIITCDVPTKQFILSLDARLA---CVVSDLDATHVFVKKDSVKEIQRELDALHEKNVYVRP 68
            +GV+ITCD+P KQFIL LD   A    V+++LD T +F++  ++K +Q +L+ L+E+N Y +P
Sbjct:    6 RGVLITCDIPMKQFILKLDEDQAPNRFVIANLDETSLFIQSWALKLVQEKLEELYEEN-YFQP 67          
BLAST of mRNA_M-pyrifera_M_contig776.18259.1 vs. uniprot
Match: A4S7H4_OSTLU (General transcription and DNA repair factor IIH subunit TFB5 n=1 Tax=Ostreococcus lucimarinus (strain CCE9901) TaxID=436017 RepID=A4S7H4_OSTLU)

HSP 1 Score: 53.1 bits (126), Expect = 1.130e-7
Identity = 30/63 (47.62%), Postives = 38/63 (60.32%), Query Frame = 0
Query:   10 GVIITCDVPTKQFILSLD----ARLACVVSDLDATHVFVKKDSVKEIQRELDALHEKNVYVRP 68
            GV+IT DVP KQ+IL L+    A    VV DLDA  V V+ D+V  I RE++A  +   YV P
Sbjct:    7 GVMITADVPIKQYILHLNDVAPAERKFVVVDLDARRVLVQPDAVDAIHREIEAFQQSTQYVAP 69          
BLAST of mRNA_M-pyrifera_M_contig776.18259.1 vs. uniprot
Match: I0Z2U2_COCSC (General transcription and DNA repair factor IIH subunit TFB5 n=2 Tax=Coccomyxa TaxID=41891 RepID=I0Z2U2_COCSC)

HSP 1 Score: 52.4 bits (124), Expect = 2.070e-7
Identity = 27/65 (41.54%), Postives = 41/65 (63.08%), Query Frame = 0
Query:    9 KGVIITCDVPTKQFILSLD----ARLACVVSDLDATHVFVKKDSVKEIQRELDALHEKNVYVRPR 69
            +GV++ CDVPTK+FILSL+         V+ DLD T +FV+   V+ +++ L   +E+N Y  PR
Sbjct:    2 RGVLLQCDVPTKEFILSLNDSKPTNERFVILDLDDTRLFVQPTVVEWLEKRLKEFNEENTYQPPR 66          
BLAST of mRNA_M-pyrifera_M_contig776.18259.1 vs. uniprot
Match: A0A1X6PEZ7_PORUM (General transcription and DNA repair factor IIH subunit TFB5 n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6PEZ7_PORUM)

HSP 1 Score: 50.4 bits (119), Expect = 1.140e-6
Identity = 26/62 (41.94%), Postives = 40/62 (64.52%), Query Frame = 0
Query:    7 SSKGVIITCDVPTKQFILSLDARLA---CVVSDLDATHVFVKKDSVKEIQRELDALHEKNVY 65
            ++ GV++TCDVP KQF+L LD   A    +V+ LD TH+F+   +V  I+ +L+ L  +N Y
Sbjct:    4 ATHGVLVTCDVPVKQFLLKLDNDRAPDRFIVAKLDETHLFIHAWAVDMIKDQLERLFAENQY 65          
BLAST of mRNA_M-pyrifera_M_contig776.18259.1 vs. uniprot
Match: A0A7R9C1N4_9CRUS (General transcription and DNA repair factor IIH subunit TFB5 n=1 Tax=Notodromas monacha TaxID=399045 RepID=A0A7R9C1N4_9CRUS)

HSP 1 Score: 49.7 bits (117), Expect = 2.500e-6
Identity = 22/54 (40.74%), Postives = 36/54 (66.67%), Query Frame = 0
Query:    8 SKGVIITCDVPTKQFILSLDARLAC----VVSDLDATHVFVKKDSVKEIQRELD 57
            SKGV++TCD P +QF++ LD +       ++ DLD+TH+F+  D V E+  ++D
Sbjct:    5 SKGVLVTCDPPMRQFLIWLDEKEKLGRKFILLDLDSTHLFISADVVNELMEKVD 58          
BLAST of mRNA_M-pyrifera_M_contig776.18259.1 vs. uniprot
Match: A0A1Y1ILP3_KLENI (General transcription and DNA repair factor IIH subunit TFB5 n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1ILP3_KLENI)

HSP 1 Score: 48.1 bits (113), Expect = 9.450e-6
Identity = 23/64 (35.94%), Postives = 39/64 (60.94%), Query Frame = 0
Query:    9 KGVIITCDVPTKQFILSLDARLA----CVVSDLDATHVFVKKDSVKEIQRELDALHEKNVYVRP 68
            KG++I CD+P KQFI+S++ +L      ++ DLD TH+FV+      +Q ++    +K  Y +P
Sbjct:    6 KGILIECDIPMKQFIVSINDQLPNAQKFIIYDLDDTHLFVQPHVADMLQNKVKDFLDKITYEKP 69          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig776.18259.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
D7G710_ECTSI5.670e-3992.75General transcription and DNA repair factor IIH su... [more]
A0A835ZC95_9STRA4.420e-1655.07General transcription and DNA repair factor IIH su... [more]
A0A2V3IN38_9FLOR1.060e-943.55General transcription and DNA repair factor IIH su... [more]
A0A6T6HXU1_9STRA1.590e-844.44General transcription and DNA repair factor IIH su... [more]
M2VWH3_GALSU1.710e-844.44General transcription and DNA repair factor IIH su... [more]
A4S7H4_OSTLU1.130e-747.62General transcription and DNA repair factor IIH su... [more]
I0Z2U2_COCSC2.070e-741.54General transcription and DNA repair factor IIH su... [more]
A0A1X6PEZ7_PORUM1.140e-641.94General transcription and DNA repair factor IIH su... [more]
A0A7R9C1N4_9CRUS2.500e-640.74General transcription and DNA repair factor IIH su... [more]
A0A1Y1ILP3_KLENI9.450e-635.94General transcription and DNA repair factor IIH su... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009400TFIIH subunit TTDA/Tfb5SMARTSM01395Tbf5_2coord: 5..67
e-value: 3.0E-15
score: 66.7
IPR009400TFIIH subunit TTDA/Tfb5PFAMPF06331Tfb5coord: 6..66
e-value: 8.0E-22
score: 77.0
IPR009400TFIIH subunit TTDA/Tfb5PANTHERPTHR28580FAMILY NOT NAMEDcoord: 8..68
IPR035935TFB5-like superfamilyGENE3D3.30.70.1220coord: 2..67
e-value: 2.8E-21
score: 76.9
IPR035935TFB5-like superfamilySUPERFAMILY142897TFB5-likecoord: 9..66
NoneNo IPR availablePANTHERPTHR28580:SF1GENERAL TRANSCRIPTION FACTOR IIH SUBUNIT 5coord: 8..68

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig776contigM-pyrifera_M_contig776:2821..5446 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig776.18259.1mRNA_M-pyrifera_M_contig776.18259.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig776 2821..5727 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig776.18259.1 ID=prot_M-pyrifera_M_contig776.18259.1|Name=mRNA_M-pyrifera_M_contig776.18259.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=70bp
MSTGFRSSKGVIITCDVPTKQFILSLDARLACVVSDLDATHVFVKKDSVK
EIQRELDALHEKNVYVRPR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR009400TFIIH_TTDA/Tfb5
IPR035935TFB5-like_sf