prot_M-pyrifera_M_contig7638.18009.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig7638.18009.1
Unique Nameprot_M-pyrifera_M_contig7638.18009.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length257
Homology
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BLAST of mRNA_M-pyrifera_M_contig7638.18009.1 vs. uniprot
Match: A0A6H5KLI3_9PHAE (RRM domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KLI3_9PHAE)

HSP 1 Score: 228 bits (581), Expect = 5.320e-71
Identity = 108/116 (93.10%), Postives = 112/116 (96.55%), Query Frame = 0 
Query:    1 MSGRRDGTFFGDPGMRGNGPPNIEGMVTLKVDNVPYNSSIEDLRRTFEKYGELGDVYMPRDLRTGEPRGFAFVRFMDQRDADDAIDRLDGEFFAGRELRIQYAKRRRPEFSAGGGG 116
            MSGRRDGTFFGDPGMRGNGPPNIEGM+TLKVDNVPYNSSI+DLRR FEKYGELGDVYMPRDLRTGEPRGFAFVRFMDQRDADDAIDR+DGEFFAGRELRIQYAK+RRPE S G GG
Sbjct:    1 MSGRRDGTFFGDPGMRGNGPPNIEGMITLKVDNVPYNSSIDDLRRIFEKYGELGDVYMPRDLRTGEPRGFAFVRFMDQRDADDAIDRMDGEFFAGRELRIQYAKKRRPEASGGYGG 116
[Close]
BLAST of mRNA_M-pyrifera_M_contig7638.18009.1 vs. uniprot
Match: A0A6H5KI74_9PHAE (RRM domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KI74_9PHAE)

HSP 1 Score: 152 bits (384), Expect = 1.880e-41
Identity = 73/106 (68.87%), Postives = 87/106 (82.08%), Query Frame = 0 
Query:   11 GDPGMRGNGPPNIEGMVTLKVDNVPYNSSIEDLRRTFEKYGELGDVYMPRDLRTGEPRGFAFVRFMDQRDADDAIDRLDGEFFAGRELRIQYAKRRRPEFSAGGGG 116
            G    RG+GPPNI+GMVTLKVDN+ +  S E+LR  FE  G+LGDVY+PRD+RTGEPRGFAFVR++D+RDADDA+DRLDG  F GRELRIQYA++RRP    GGGG
Sbjct:    7 GGSDQRGSGPPNIDGMVTLKVDNIAFTCSPEELREVFEGCGKLGDVYIPRDMRTGEPRGFAFVRYLDKRDADDAVDRLDGTRFNGRELRIQYARKRRP----GGGG 108
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BLAST of mRNA_M-pyrifera_M_contig7638.18009.1 vs. uniprot
Match: A0A6S7FVA8_PARCT (Serine arginine-rich splicing factor 2 n=2 Tax=Alcyonacea TaxID=40677 RepID=A0A6S7FVA8_PARCT)

HSP 1 Score: 131 bits (329), Expect = 3.840e-34
Identity = 56/94 (59.57%), Postives = 76/94 (80.85%), Query Frame = 0 
Query:   16 RGNGPPNIEGMVTLKVDNVPYNSSIEDLRRTFEKYGELGDVYMPRDLRTGEPRGFAFVRFMDQRDADDAIDRLDGEFFAGRELRIQYAKRRRPE 109
            RG GPPNIEGM +LKVDN+ Y ++++DL++ F  YG++GDVY+PRD RT + RGFAFVRF ++RDA+DA+DR+DG    GRE+R+Q AK  RP+
Sbjct:    5 RGRGPPNIEGMTSLKVDNLTYRTTVDDLKKVFRAYGDVGDVYIPRDARTNQSRGFAFVRFFERRDAEDAMDRVDGSVLDGREIRVQNAKYGRPQ 98
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BLAST of mRNA_M-pyrifera_M_contig7638.18009.1 vs. uniprot
Match: UPI001B88AFA6 (serine/arginine-rich splicing factor 2-like isoform X1 n=2 Tax=Gigantopelta aegis TaxID=1735272 RepID=UPI001B88AFA6)

HSP 1 Score: 130 bits (328), Expect = 4.100e-34
Identity = 60/98 (61.22%), Postives = 77/98 (78.57%), Query Frame = 0 
Query:   17 GNGPPNIEGMVTLKVDNVPYNSSIEDLRRTFEKYGELGDVYMPRDLRTGEPRGFAFVRFMDQRDADDAIDRLDGEFFAGRELRIQYAKRRRPEFSAGG 114
            G GPPN EGM++LKVDN+ Y ++ E+L+R FEKYG++GDVY+PRD  T E RGFAFVRF D+RDA+DA+D +DG  F GRELR+Q A+  RP+   GG
Sbjct:    4 GRGPPNSEGMISLKVDNLTYRTTPENLKRAFEKYGDVGDVYIPRDRFTRESRGFAFVRFYDKRDAEDAMDSMDGAIFDGRELRVQTARYGRPDTRRGG 101
[Close]
BLAST of mRNA_M-pyrifera_M_contig7638.18009.1 vs. uniprot
Match: T1J1U9_STRMM (RRM domain-containing protein n=1 Tax=Strigamia maritima TaxID=126957 RepID=T1J1U9_STRMM)

HSP 1 Score: 131 bits (329), Expect = 4.790e-34
Identity = 60/92 (65.22%), Postives = 74/92 (80.43%), Query Frame = 0 
Query:   17 GNGPPNIEGMVTLKVDNVPYNSSIEDLRRTFEKYGELGDVYMPRDLRTGEPRGFAFVRFMDQRDADDAIDRLDGEFFAGRELRIQYAKRRRP 108
            G GPPNIEGM +LKVDN+ Y ++ EDLRR FEKYGE+GDVY+PRD  T E RGFAFVRF D+RDA+DA++ +DG+   GRELR+Q A+  RP
Sbjct:    4 GRGPPNIEGMTSLKVDNLTYRTTPEDLRRAFEKYGEVGDVYIPRDRFTRESRGFAFVRFYDKRDAEDALEAMDGQMLDGRELRVQMARYGRP 95
[Close]
BLAST of mRNA_M-pyrifera_M_contig7638.18009.1 vs. uniprot
Match: A0A8J5KC64_HOMAM (Serine/arginine-rich splicing factor 2-like n=15 Tax=Decapoda TaxID=6683 RepID=A0A8J5KC64_HOMAM)

HSP 1 Score: 125 bits (314), Expect = 4.600e-33
Identity = 57/93 (61.29%), Postives = 75/93 (80.65%), Query Frame = 0 
Query:   17 GNGPPNIEGMVTLKVDNVPYNSSIEDLRRTFEKYGELGDVYMPRDLRTGEPRGFAFVRFMDQRDADDAIDRLDGEFFAGRELRIQYAKRRRPE 109
            G GPP+I+GM +LKVDN+ Y ++ EDLRR+FEKYGE+GDVY+PRD  + E RGFAFVR+ D+RDA+DA++ +DG    GRELR+Q A+  RPE
Sbjct:    4 GRGPPDIKGMTSLKVDNLTYRTTPEDLRRSFEKYGEIGDVYIPRDRFSRESRGFAFVRYYDRRDAEDAMEAMDGRRLDGRELRVQMARYGRPE 96
[Close]
BLAST of mRNA_M-pyrifera_M_contig7638.18009.1 vs. uniprot
Match: T1G9I7_HELRO (RRM domain-containing protein n=1 Tax=Helobdella robusta TaxID=6412 RepID=T1G9I7_HELRO)

HSP 1 Score: 127 bits (318), Expect = 4.960e-33
Identity = 59/101 (58.42%), Postives = 74/101 (73.27%), Query Frame = 0 
Query:   16 RGNGPPNIEGMVTLKVDNVPYNSSIEDLRRTFEKYGELGDVYMPRDLRTGEPRGFAFVRFMDQRDADDAIDRLDGEFFAGRELRIQYAKRRRPEFSAGGGG 116
            R NGPP+ E + +LKVDN+ + +++E LR+ FEKYGE+GDVY+PRD  T E RGF FVRF D+RDA+DAID +DG    GRELR+Q AK  RP    GG G
Sbjct:    4 RYNGPPDTESLFSLKVDNLTFRTTVESLRKAFEKYGEIGDVYIPRDRYTQESRGFGFVRFYDERDAEDAIDGMDGRIMDGRELRVQLAKHPRPPNRYGGSG 104
[Close]
BLAST of mRNA_M-pyrifera_M_contig7638.18009.1 vs. uniprot
Match: UPI000C254D37 (serine/arginine-rich splicing factor 2-like n=1 Tax=Leptinotarsa decemlineata TaxID=7539 RepID=UPI000C254D37)

HSP 1 Score: 127 bits (318), Expect = 5.900e-33
Identity = 57/92 (61.96%), Postives = 72/92 (78.26%), Query Frame = 0 
Query:   17 GNGPPNIEGMVTLKVDNVPYNSSIEDLRRTFEKYGELGDVYMPRDLRTGEPRGFAFVRFMDQRDADDAIDRLDGEFFAGRELRIQYAKRRRP 108
            G  PP IEGM++LKVDN+ Y +S+EDLRR FE+ GE+GD+Y+PRD  T E RGFAFVRF D+RDA+DA+D +DG    GRELR+Q A+  RP
Sbjct:    5 GRAPPRIEGMISLKVDNLTYRTSVEDLRRAFERCGEVGDIYIPRDRFTRESRGFAFVRFYDKRDAEDALDAMDGRMLDGRELRVQMARYGRP 96
[Close]
BLAST of mRNA_M-pyrifera_M_contig7638.18009.1 vs. uniprot
Match: V3ZXL2_LOTGI (RRM domain-containing protein (Fragment) n=1 Tax=Lottia gigantea TaxID=225164 RepID=V3ZXL2_LOTGI)

HSP 1 Score: 126 bits (317), Expect = 6.600e-33
Identity = 56/93 (60.22%), Postives = 74/93 (79.57%), Query Frame = 0 
Query:   16 RGNGPPNIEGMVTLKVDNVPYNSSIEDLRRTFEKYGELGDVYMPRDLRTGEPRGFAFVRFMDQRDADDAIDRLDGEFFAGRELRIQYAKRRRP 108
            RGNGPP+ +GMV+LKVDN+ Y +  +DL+R FEKYG++GD+Y+PRD  T E RGFAFVRF D+RDA+DA+D +DG    GR+LR+Q A+  RP
Sbjct:    2 RGNGPPSTDGMVSLKVDNLTYRTRPDDLKRAFEKYGDVGDIYIPRDRITKESRGFAFVRFFDKRDAEDAMDSMDGAMMDGRDLRVQMARYGRP 94
[Close]
BLAST of mRNA_M-pyrifera_M_contig7638.18009.1 vs. uniprot
Match: R7U1V7_CAPTE (Serine/arginine-rich splicing factor 2 n=1 Tax=Capitella teleta TaxID=283909 RepID=R7U1V7_CAPTE)

HSP 1 Score: 126 bits (317), Expect = 7.630e-33
Identity = 58/89 (65.17%), Postives = 71/89 (79.78%), Query Frame = 0 
Query:   20 PPNIEGMVTLKVDNVPYNSSIEDLRRTFEKYGELGDVYMPRDLRTGEPRGFAFVRFMDQRDADDAIDRLDGEFFAGRELRIQYAKRRRP 108
            PPNIEGM +LKVDN+ Y ++ EDLRR FEKYG++GDVY+PRD  + E RGFAFVRF D+RDADDA++ +DG    GRELR+Q AK  RP
Sbjct:    7 PPNIEGMASLKVDNLTYRTTTEDLRRAFEKYGDVGDVYIPRDRFSHESRGFAFVRFFDKRDADDAMESMDGAVMDGRELRVQSAKYGRP 95
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig7638.18009.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KLI3_9PHAE5.320e-7193.10RRM domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A6H5KI74_9PHAE1.880e-4168.87RRM domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6S7FVA8_PARCT3.840e-3459.57Serine arginine-rich splicing factor 2 n=2 Tax=Alc... [more]
UPI001B88AFA64.100e-3461.22serine/arginine-rich splicing factor 2-like isofor... [more]
T1J1U9_STRMM4.790e-3465.22RRM domain-containing protein n=1 Tax=Strigamia ma... [more]
A0A8J5KC64_HOMAM4.600e-3361.29Serine/arginine-rich splicing factor 2-like n=15 T... [more]
T1G9I7_HELRO4.960e-3358.42RRM domain-containing protein n=1 Tax=Helobdella r... [more]
UPI000C254D375.900e-3361.96serine/arginine-rich splicing factor 2-like n=1 Ta... [more]
V3ZXL2_LOTGI6.600e-3360.22RRM domain-containing protein (Fragment) n=1 Tax=L... [more]
R7U1V7_CAPTE7.630e-3365.17Serine/arginine-rich splicing factor 2 n=1 Tax=Cap... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 28..101
e-value: 3.0E-22
score: 89.9
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 30..99
e-value: 1.1E-18
score: 66.8
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 27..105
score: 19.86
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 24..132
e-value: 5.3E-27
score: 96.5
NoneNo IPR availablePANTHERPTHR23147SERINE/ARGININE RICH SPLICING FACTORcoord: 20..213
NoneNo IPR availablePANTHERPTHR23147:SF17SERINE/ARGININE-RICH SPLICING FACTOR 2coord: 20..213
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 21..137

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig7638contigM-pyrifera_M_contig7638:1192..11760 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig7638.18009.1mRNA_M-pyrifera_M_contig7638.18009.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig7638 1192..11760 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig7638.18009.1 ID=prot_M-pyrifera_M_contig7638.18009.1|Name=mRNA_M-pyrifera_M_contig7638.18009.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=257bp
MSGRRDGTFFGDPGMRGNGPPNIEGMVTLKVDNVPYNSSIEDLRRTFEKY
GELGDVYMPRDLRTGEPRGFAFVRFMDQRDADDAIDRLDGEFFAGRELRI
QYAKRRRPEFSAGGGGGGGGGGGYGGGHGGGYGGGYGGGGGGGRYGGRDD
RRDDRRDDRRDDRRDDRRDDNHRRRRSRSRSRSRGRRSRSRSPPPRRRSR
SHSPVARRGHRSKSRSPSPRRDRKRRDSSAEDGGGGGKRVKETPTRSRRD
SSIDGGS
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
IPR035979RBD_domain_sf