prot_M-pyrifera_M_contig7347.17419.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig7347.17419.1
Unique Nameprot_M-pyrifera_M_contig7347.17419.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length113
Homology
BLAST of mRNA_M-pyrifera_M_contig7347.17419.1 vs. uniprot
Match: D7FQ94_ECTSI (Small nucleolar ribonucleoprotein U3 component n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQ94_ECTSI)

HSP 1 Score: 212 bits (539), Expect = 2.350e-68
Identity = 107/112 (95.54%), Postives = 109/112 (97.32%), Query Frame = 0
Query:    1 MTEQLLAKLFTMGVINTKKSLAKTETASVSAFCRRRLPVVMVRLKMSETLTEATTYIEQGHVRVGPHAVTDAAFLVTRSMEDFVTWVDGSKIKRAIKTYEDKVDDFDLLGEG 112
            MTEQLL KLF MG+INTKKSLAKTETASVS+FCRRRLPVVMVRLKMSETLTEATTYIEQGHVRVGPHAVTD AFLVTRSMEDFVTWVDGSKIKRAIKTYEDKVDDFDLLGEG
Sbjct:   73 MTEQLLEKLFAMGIINTKKSLAKTETASVSSFCRRRLPVVMVRLKMSETLTEATTYIEQGHVRVGPHAVTDPAFLVTRSMEDFVTWVDGSKIKRAIKTYEDKVDDFDLLGEG 184          
BLAST of mRNA_M-pyrifera_M_contig7347.17419.1 vs. uniprot
Match: A0A836CN51_9STRA (Small nucleolar ribonucleoprotein U3 component n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CN51_9STRA)

HSP 1 Score: 167 bits (424), Expect = 7.320e-51
Identity = 84/112 (75.00%), Postives = 95/112 (84.82%), Query Frame = 0
Query:    1 MTEQLLAKLFTMGVINTKKSLAKTETASVSAFCRRRLPVVMVRLKMSETLTEATTYIEQGHVRVGPHAVTDAAFLVTRSMEDFVTWVDGSKIKRAIKTYEDKVDDFDLLGEG 112
            MT QLL+KL ++GVI+T+KSL K E  +VSAFCRRRLPVVMVR KMSETL EA T+IE GH+RVGP+ VTD AFLVTR+MEDFVTWVD SKIKR I  Y DK+DDFDLLGEG
Sbjct:   73 MTSQLLSKLQSIGVIDTEKSLIKAEQLTVSAFCRRRLPVVMVRAKMSETLREAITFIESGHIRVGPNVVTDPAFLVTRTMEDFVTWVDSSKIKRTIAKYNDKLDDFDLLGEG 184          
BLAST of mRNA_M-pyrifera_M_contig7347.17419.1 vs. uniprot
Match: A0A6S9JYI8_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9JYI8_HETAK)

HSP 1 Score: 166 bits (421), Expect = 2.030e-50
Identity = 83/110 (75.45%), Postives = 91/110 (82.73%), Query Frame = 0
Query:    1 MTEQLLAKLFTMGVINTKKSLAKTETASVSAFCRRRLPVVMVRLKMSETLTEATTYIEQGHVRVGPHAVTDAAFLVTRSMEDFVTWVDGSKIKRAIKTYEDKVDDFDLLG 110
            MTE LL KLF MGVIN+KKSL   E  +VSAFCRRRLPVVMVRLKMSET+ EA T+IE GHVRVGPH VTD AFLV R+MEDF+TWVD SKIKR I  Y DK+DD+DLLG
Sbjct:   73 MTEDLLEKLFNMGVINSKKSLQLVEKVNVSAFCRRRLPVVMVRLKMSETIKEAITFIEHGHVRVGPHCVTDPAFLVPRAMEDFLTWVDSSKIKRTIMKYNDKLDDYDLLG 182          
BLAST of mRNA_M-pyrifera_M_contig7347.17419.1 vs. uniprot
Match: W7TBD6_9STRA (Ribosomal protein S4/S9 n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TBD6_9STRA)

HSP 1 Score: 164 bits (414), Expect = 2.350e-49
Identity = 80/110 (72.73%), Postives = 93/110 (84.55%), Query Frame = 0
Query:    1 MTEQLLAKLFTMGVINTKKSLAKTETASVSAFCRRRLPVVMVRLKMSETLTEATTYIEQGHVRVGPHAVTDAAFLVTRSMEDFVTWVDGSKIKRAIKTYEDKVDDFDLLG 110
            MT+ LL+KL+ MG+I TKKSL++ ET + SAFCRRRLPVVMVR+KM+ETL EA T+IEQGHVRVGP  VTD  FLVTRS EDF+TWVD SKIKRA+  Y DK+DDFDLLG
Sbjct:   73 MTDDLLSKLYNMGLIPTKKSLSQCETLAASAFCRRRLPVVMVRMKMAETLKEAVTFIEQGHVRVGPTVVTDPTFLVTRSQEDFLTWVDSSKIKRAVVAYNDKLDDFDLLG 182          
BLAST of mRNA_M-pyrifera_M_contig7347.17419.1 vs. uniprot
Match: K3XB78_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3XB78_GLOUD)

HSP 1 Score: 163 bits (412), Expect = 4.720e-49
Identity = 80/109 (73.39%), Postives = 90/109 (82.57%), Query Frame = 0
Query:    2 TEQLLAKLFTMGVINTKKSLAKTETASVSAFCRRRLPVVMVRLKMSETLTEATTYIEQGHVRVGPHAVTDAAFLVTRSMEDFVTWVDGSKIKRAIKTYEDKVDDFDLLG 110
            TE LL KLF MG+I TKKSL K E  +VSAFCRRRLPVVMVR+KM+E + EA T++EQGHVRVGP  VTD A+LVTRSMEDFVTWVD SKIKR I  Y DK+DD+DLLG
Sbjct:   74 TEALLEKLFNMGLIQTKKSLMKAEEVNVSAFCRRRLPVVMVRVKMAENIKEAATFVEQGHVRVGPSVVTDPAYLVTRSMEDFVTWVDSSKIKRTIMKYNDKLDDYDLLG 182          
BLAST of mRNA_M-pyrifera_M_contig7347.17419.1 vs. uniprot
Match: F0W7J4_9STRA (U3 small nucleolar ribonucleoprotein protein IMP3 p n=2 Tax=Albugo TaxID=65356 RepID=F0W7J4_9STRA)

HSP 1 Score: 161 bits (407), Expect = 2.710e-48
Identity = 79/109 (72.48%), Postives = 91/109 (83.49%), Query Frame = 0
Query:    2 TEQLLAKLFTMGVINTKKSLAKTETASVSAFCRRRLPVVMVRLKMSETLTEATTYIEQGHVRVGPHAVTDAAFLVTRSMEDFVTWVDGSKIKRAIKTYEDKVDDFDLLG 110
            TE LL KLF MG+I TKKSL   E  +VS+FCRRRLPVVM+RLKM+ET+ EATT++EQGHVRVGP+ V+D AFLVTRS EDFVTWVD SKIKR I  Y DK+DD+DLLG
Sbjct:   74 TEALLEKLFGMGLIPTKKSLLVAENVNVSSFCRRRLPVVMIRLKMAETIKEATTFVEQGHVRVGPNVVSDPAFLVTRSFEDFVTWVDSSKIKRTIMKYNDKLDDYDLLG 182          
BLAST of mRNA_M-pyrifera_M_contig7347.17419.1 vs. uniprot
Match: M4BJW4_HYAAE (Uncharacterized protein n=24 Tax=Oomycota TaxID=4762 RepID=M4BJW4_HYAAE)

HSP 1 Score: 160 bits (405), Expect = 5.630e-48
Identity = 79/109 (72.48%), Postives = 91/109 (83.49%), Query Frame = 0
Query:    2 TEQLLAKLFTMGVINTKKSLAKTETASVSAFCRRRLPVVMVRLKMSETLTEATTYIEQGHVRVGPHAVTDAAFLVTRSMEDFVTWVDGSKIKRAIKTYEDKVDDFDLLG 110
            T  LL KL+ MG+I TKKSL K E  +VSAFCRRRLPVV+VR+KM+E++ EATT++EQGHVRVGP  VTD AFLVTRSMEDFVTWVD SKIKR I  Y DK+DD+DLLG
Sbjct:   75 TTALLDKLYHMGLIQTKKSLLKAEEVNVSAFCRRRLPVVLVRVKMAESIKEATTFVEQGHVRVGPTVVTDPAFLVTRSMEDFVTWVDSSKIKRTIMKYNDKLDDYDLLG 183          
BLAST of mRNA_M-pyrifera_M_contig7347.17419.1 vs. uniprot
Match: A0A024TJP5_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces TaxID=100860 RepID=A0A024TJP5_9STRA)

HSP 1 Score: 159 bits (403), Expect = 1.100e-47
Identity = 78/109 (71.56%), Postives = 90/109 (82.57%), Query Frame = 0
Query:    2 TEQLLAKLFTMGVINTKKSLAKTETASVSAFCRRRLPVVMVRLKMSETLTEATTYIEQGHVRVGPHAVTDAAFLVTRSMEDFVTWVDGSKIKRAIKTYEDKVDDFDLLG 110
            TE+LL KL+ MG+IN+ KSL K E  +VS+FCRRRLPVVMVRLKMSE + EATT+IEQGHVRVGP+ VTD  F+VTR  EDFVTWVD SKIKR I  Y DK+DD+DLLG
Sbjct:   74 TEKLLEKLYHMGIINSTKSLLKAEELNVSSFCRRRLPVVMVRLKMSENIKEATTFIEQGHVRVGPNTVTDPGFMVTRPFEDFVTWVDSSKIKRTILKYNDKLDDYDLLG 182          
BLAST of mRNA_M-pyrifera_M_contig7347.17419.1 vs. uniprot
Match: A0A7S1VV42_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VV42_9STRA)

HSP 1 Score: 159 bits (401), Expect = 2.080e-47
Identity = 76/109 (69.72%), Postives = 91/109 (83.49%), Query Frame = 0
Query:    1 MTEQLLAKLFTMGVINTKKSLAKTETASVSAFCRRRLPVVMVRLKMSETLTEATTYIEQGHVRVGPHAVTDAAFLVTRSMEDFVTWVDGSKIKRAIKTYEDKVDDFDLL 109
            MT+QLL KLF MG+I TKKSL K E  + SA CRRR+PVVMVR+KM+ET+  A T++EQGHVRVGPH VTD AFLVT +MED+VTWVD SKI+RA++ Y DK+DDFDLL
Sbjct:   73 MTDQLLQKLFDMGLITTKKSLLKAEELTASALCRRRIPVVMVRMKMAETVKAAVTFVEQGHVRVGPHVVTDPAFLVTITMEDYVTWVDSSKIRRAVQKYNDKLDDFDLL 181          
BLAST of mRNA_M-pyrifera_M_contig7347.17419.1 vs. uniprot
Match: A0A061RGH8_9CHLO (U3 small nucleolar ribonucleoprotein IMP3 n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061RGH8_9CHLO)

HSP 1 Score: 158 bits (400), Expect = 3.140e-47
Identity = 79/109 (72.48%), Postives = 92/109 (84.40%), Query Frame = 0
Query:    1 MTEQLLAKLFTMGVINTKKSLAKTETASVSAFCRRRLPVVMVRLKMSETLTEATTYIEQGHVRVGPHAVTDAAFLVTRSMEDFVTWVDGSKIKRAIKTYEDKVDDFDLL 109
            +T++LL KL++MGV+ TKKSLA+ E  SVS+FCRRRL VVM RLKMSETL EA T+IEQGHVRVGP  VTD AFLVTR+MEDFVTWVD SKIKR +  Y DK+DD+DLL
Sbjct:   73 LTDKLLNKLYSMGVLPTKKSLAQVERLSVSSFCRRRLAVVMTRLKMSETLKEAATFIEQGHVRVGPDTVTDPAFLVTRNMEDFVTWVDTSKIKRKVMKYNDKLDDYDLL 181          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig7347.17419.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQ94_ECTSI2.350e-6895.54Small nucleolar ribonucleoprotein U3 component n=2... [more]
A0A836CN51_9STRA7.320e-5175.00Small nucleolar ribonucleoprotein U3 component n=1... [more]
A0A6S9JYI8_HETAK2.030e-5075.45Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
W7TBD6_9STRA2.350e-4972.73Ribosomal protein S4/S9 n=3 Tax=Monodopsidaceae Ta... [more]
K3XB78_GLOUD4.720e-4973.39Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
F0W7J4_9STRA2.710e-4872.48U3 small nucleolar ribonucleoprotein protein IMP3 ... [more]
M4BJW4_HYAAE5.630e-4872.48Uncharacterized protein n=24 Tax=Oomycota TaxID=47... [more]
A0A024TJP5_9STRA1.100e-4771.56Uncharacterized protein n=2 Tax=Aphanomyces TaxID=... [more]
A0A7S1VV42_9STRA2.080e-4769.72Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A061RGH8_9CHLO3.140e-4772.48U3 small nucleolar ribonucleoprotein IMP3 n=1 Tax=... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002942RNA-binding S4 domainSMARTSM00363s4_6coord: 35..100
e-value: 1.1E-4
score: 31.5
IPR002942RNA-binding S4 domainPFAMPF01479S4coord: 35..81
e-value: 3.7E-11
score: 42.6
IPR002942RNA-binding S4 domainPROSITEPS50889S4coord: 35..99
score: 9.769
IPR036986RNA-binding S4 domain superfamilyGENE3D3.10.290.10coord: 36..107
e-value: 6.4E-6
score: 28.2
IPR022801Ribosomal protein S4/S9PANTHERPTHR1183130S 40S RIBOSOMAL PROTEINcoord: 1..108
NoneNo IPR availablePANTHERPTHR11831:SF1U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN PROTEIN IMP3coord: 1..108
NoneNo IPR availableSUPERFAMILY55174Alpha-L RNA-binding motifcoord: 24..102

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig7347contigM-pyrifera_M_contig7347:10722..12361 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig7347.17419.1mRNA_M-pyrifera_M_contig7347.17419.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig7347 10578..12895 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig7347.17419.1 ID=prot_M-pyrifera_M_contig7347.17419.1|Name=mRNA_M-pyrifera_M_contig7347.17419.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=113bp
MTEQLLAKLFTMGVINTKKSLAKTETASVSAFCRRRLPVVMVRLKMSETL
TEATTYIEQGHVRVGPHAVTDAAFLVTRSMEDFVTWVDGSKIKRAIKTYE
DKVDDFDLLGEG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002942S4_RNA-bd
IPR036986S4_RNA-bd_sf
IPR022801Ribosomal_S4/S9