prot_M-pyrifera_M_contig72268.17184.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig72268.17184.1
Unique Nameprot_M-pyrifera_M_contig72268.17184.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length105
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig72268.17184.1 vs. uniprot
Match: A0A7X5WWS2_9ACTN (LysR family transcriptional regulator n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7X5WWS2_9ACTN)

HSP 1 Score: 170 bits (431), Expect = 3.200e-50
Identity = 91/105 (86.67%), Postives = 98/105 (93.33%), Query Frame = 0 
Query:    1 MDLRQLNALLAVAEHQSFSAAARALHTVQSNVSTHVARLEQEVGSTLIDRAQGELTVEGEIVADRARRILTELRAIEDDLVALRGEVSGRVRAGVIGTTARWLVP 105
            MDLRQLNALLAVAEH SFSAAARALHTVQSNVSTHVARLEQEVG+ LI+R++GELT EGEIVA RARRI+ ELRAIEDDLVALR +V+G VRAGVIGTTARWLVP
Sbjct:    1 MDLRQLNALLAVAEHHSFSAAARALHTVQSNVSTHVARLEQEVGAILIERSRGELTTEGEIVAGRARRIIAELRAIEDDLVALRDDVAGSVRAGVIGTTARWLVP 105
[Close]
BLAST of mRNA_M-pyrifera_M_contig72268.17184.1 vs. uniprot
Match: A0A6B1BAC1_9ACTN (LysR family transcriptional regulator n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A6B1BAC1_9ACTN)

HSP 1 Score: 162 bits (411), Expect = 1.760e-47
Identity = 85/105 (80.95%), Postives = 95/105 (90.48%), Query Frame = 0 
Query:    1 MDLRQLNALLAVAEHQSFSAAARALHTVQSNVSTHVARLEQEVGSTLIDRAQGELTVEGEIVADRARRILTELRAIEDDLVALRGEVSGRVRAGVIGTTARWLVP 105
            MDLRQL+ALLAVAEH SFSAAARALHTVQSN+STHVARLE+EVG+ LIDR + ELT EG +VA RARR++ ELRAIEDDL+ALR E+SG VRAGVIGTTARWLVP
Sbjct:    1 MDLRQLHALLAVAEHHSFSAAARALHTVQSNISTHVARLEREVGAVLIDRERSELTTEGAVVASRARRMIAELRAIEDDLIALRDELSGSVRAGVIGTTARWLVP 105
[Close]
BLAST of mRNA_M-pyrifera_M_contig72268.17184.1 vs. uniprot
Match: A0A2D8GG62_9ACTN (HTH lysR-type domain-containing protein n=5 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2D8GG62_9ACTN)

HSP 1 Score: 161 bits (407), Expect = 2.590e-46
Identity = 86/104 (82.69%), Postives = 95/104 (91.35%), Query Frame = 0 
Query:    1 MDLRQLNALLAVAEHQSFSAAARALHTVQSNVSTHVARLEQEVGSTLIDRAQGELTVEGEIVADRARRILTELRAIEDDLVALRGEVSGRVRAGVIGTTARWLV 104
            MDLRQL+ALLAVAEH+SFSAAARALHTVQSNVSTH+ARLE E+GSTLIDRA+GELT EGEIVADRARRI+ ELR+IE DL +L  EVSG VR G+IGTTARWLV
Sbjct:   57 MDLRQLHALLAVAEHRSFSAAARALHTVQSNVSTHIARLETELGSTLIDRARGELTSEGEIVADRARRIIGELRSIEHDLASLSDEVSGHVRLGIIGTTARWLV 160
[Close]
BLAST of mRNA_M-pyrifera_M_contig72268.17184.1 vs. uniprot
Match: A0A3M2GZC7_ACTSX (LysR family transcriptional regulator n=1 Tax=Actinomyces sp. TaxID=29317 RepID=A0A3M2GZC7_ACTSX)

HSP 1 Score: 159 bits (402), Expect = 3.570e-46
Identity = 83/105 (79.05%), Postives = 93/105 (88.57%), Query Frame = 0 
Query:    1 MDLRQLNALLAVAEHQSFSAAARALHTVQSNVSTHVARLEQEVGSTLIDRAQGELTVEGEIVADRARRILTELRAIEDDLVALRGEVSGRVRAGVIGTTARWLVP 105
            MDLRQLNAL+AVA+H++FSAAARALHTVQSNVSTHV+RLE+E+G  L+DR++GELT EG IV DRARRI  ELRAIEDDL A R EV G VRAGVIGTTARWLVP
Sbjct:    1 MDLRQLNALVAVADHRTFSAAARALHTVQSNVSTHVSRLERELGCLLVDRSRGELTAEGHIVVDRARRIQAELRAIEDDLAAARSEVRGEVRAGVIGTTARWLVP 105
[Close]
BLAST of mRNA_M-pyrifera_M_contig72268.17184.1 vs. uniprot
Match: A0A354B5X0_9ACTN (HTH lysR-type domain-containing protein n=2 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A354B5X0_9ACTN)

HSP 1 Score: 161 bits (407), Expect = 4.370e-45
Identity = 86/104 (82.69%), Postives = 95/104 (91.35%), Query Frame = 0 
Query:    1 MDLRQLNALLAVAEHQSFSAAARALHTVQSNVSTHVARLEQEVGSTLIDRAQGELTVEGEIVADRARRILTELRAIEDDLVALRGEVSGRVRAGVIGTTARWLV 104
            MDLRQL+ALLAVAEH+SFSAAARALHTVQSNVSTH+ARLE E+GSTLIDRA+GELT EGEIVADRARRI+ ELR+IE DL +L  EVSG VR G+IGTTARWLV
Sbjct:  204 MDLRQLHALLAVAEHRSFSAAARALHTVQSNVSTHIARLETELGSTLIDRARGELTSEGEIVADRARRIIGELRSIEHDLASLSDEVSGHVRLGIIGTTARWLV 307
[Close]
BLAST of mRNA_M-pyrifera_M_contig72268.17184.1 vs. uniprot
Match: A0A2D6U6Z8_9ACTN (HTH lysR-type domain-containing protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2D6U6Z8_9ACTN)

HSP 1 Score: 157 bits (398), Expect = 8.890e-43
Identity = 85/104 (81.73%), Postives = 94/104 (90.38%), Query Frame = 0 
Query:    1 MDLRQLNALLAVAEHQSFSAAARALHTVQSNVSTHVARLEQEVGSTLIDRAQGELTVEGEIVADRARRILTELRAIEDDLVALRGEVSGRVRAGVIGTTARWLV 104
            MDLRQL+ALLAVAE +SFSAAARALHTVQSNVSTH+ARLE E+GSTLIDRA+GELT EGEIVADRARRI+ ELR+IE DL +L  EVSG VR G+IGTTARWLV
Sbjct:  446 MDLRQLHALLAVAEXRSFSAAARALHTVQSNVSTHIARLETELGSTLIDRARGELTSEGEIVADRARRIIGELRSIEHDLASLSDEVSGHVRLGIIGTTARWLV 549
[Close]
BLAST of mRNA_M-pyrifera_M_contig72268.17184.1 vs. uniprot
Match: A0A6B1E6Q6_9ACTN (LysR family transcriptional regulator n=2 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A6B1E6Q6_9ACTN)

HSP 1 Score: 146 bits (368), Expect = 5.990e-41
Identity = 76/105 (72.38%), Postives = 89/105 (84.76%), Query Frame = 0 
Query:    1 MDLRQLNALLAVAEHQSFSAAARALHTVQSNVSTHVARLEQEVGSTLIDRAQGELTVEGEIVADRARRILTELRAIEDDLVALRGEVSGRVRAGVIGTTARWLVP 105
            MD+RQLN LLAVAEHQSFSAAA+ALHTVQSNVS H++RLE E G+TLIDRA+  LT EG++VADRARRI  EL+AI DDL ++R  +SG V  GVIGTTARW+VP
Sbjct:    1 MDVRQLNVLLAVAEHQSFSAAAQALHTVQSNVSAHISRLEHEAGATLIDRARRCLTPEGQVVADRARRIQLELQAISDDLASMRANLSGTVTVGVIGTTARWIVP 105
[Close]
BLAST of mRNA_M-pyrifera_M_contig72268.17184.1 vs. uniprot
Match: A0A6B0WJG6_9ACTN (LysR family transcriptional regulator n=7 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A6B0WJG6_9ACTN)

HSP 1 Score: 144 bits (362), Expect = 3.740e-40
Identity = 77/105 (73.33%), Postives = 89/105 (84.76%), Query Frame = 0 
Query:    1 MDLRQLNALLAVAEHQSFSAAARALHTVQSNVSTHVARLEQEVGSTLIDRAQGELTVEGEIVADRARRILTELRAIEDDLVALRGEVSGRVRAGVIGTTARWLVP 105
            MDLRQL+ LLAVAEHQSFSAAARALHTVQSNVS H+A+LE+E G+ LIDRA+  LT EG+IVADRARRI  E+RAI DDL A++  +SG V  G+IGTTARWLVP
Sbjct:    1 MDLRQLDVLLAVAEHQSFSAAARALHTVQSNVSAHIAQLEREAGAELIDRARRCLTPEGQIVADRARRIQLEMRAISDDLGAMQANLSGTVTVGMIGTTARWLVP 105
[Close]
BLAST of mRNA_M-pyrifera_M_contig72268.17184.1 vs. uniprot
Match: UPI001AA06B6A (LysR family transcriptional regulator n=1 Tax=Rhabdothermincola sediminis TaxID=2751370 RepID=UPI001AA06B6A)

HSP 1 Score: 143 bits (361), Expect = 5.040e-40
Identity = 79/105 (75.24%), Postives = 87/105 (82.86%), Query Frame = 0 
Query:    1 MDLRQLNALLAVAEHQSFSAAARALHTVQSNVSTHVARLEQEVGSTLIDRAQGELTVEGEIVADRARRILTELRAIEDDLVALRGEVSGRVRAGVIGTTARWLVP 105
            MDLRQLNALLAVA+  SFSAAARALHTVQSNVSTHVARLE+E+GS LIDRA G LT EGE+VA RARR+  EL A+  DL +L  EV+G  R GVIGTTARWLVP
Sbjct:    1 MDLRQLNALLAVADTGSFSAAARALHTVQSNVSTHVARLEKELGSVLIDRATGRLTEEGELVAARARRVRAELDALVADLASLHDEVAGTARIGVIGTTARWLVP 105
[Close]
BLAST of mRNA_M-pyrifera_M_contig72268.17184.1 vs. uniprot
Match: A0A6G0A6E9_9ACTN (LysR family transcriptional regulator n=2 Tax=Bacteria TaxID=2 RepID=A0A6G0A6E9_9ACTN)

HSP 1 Score: 143 bits (360), Expect = 6.780e-40
Identity = 73/105 (69.52%), Postives = 89/105 (84.76%), Query Frame = 0 
Query:    1 MDLRQLNALLAVAEHQSFSAAARALHTVQSNVSTHVARLEQEVGSTLIDRAQGELTVEGEIVADRARRILTELRAIEDDLVALRGEVSGRVRAGVIGTTARWLVP 105
            MDL+QL AL+AVAEH+SFSAAARALHTVQSNVSTHVA LE+E+G TL+DR+ GELT EG +V +RARR+ +EL A+  D+ A+  E+SG VRAG+IGTTARWL P
Sbjct:    1 MDLKQLAALVAVAEHRSFSAAARALHTVQSNVSTHVAHLERELGVTLVDRSAGELTEEGRVVVERARRVQSELEALVSDVAAVHDEISGTVRAGIIGTTARWLSP 105
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig72268.17184.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7X5WWS2_9ACTN3.200e-5086.67LysR family transcriptional regulator n=1 Tax=Acti... [more]
A0A6B1BAC1_9ACTN1.760e-4780.95LysR family transcriptional regulator n=1 Tax=Acid... [more]
A0A2D8GG62_9ACTN2.590e-4682.69HTH lysR-type domain-containing protein n=5 Tax=Ac... [more]
A0A3M2GZC7_ACTSX3.570e-4679.05LysR family transcriptional regulator n=1 Tax=Acti... [more]
A0A354B5X0_9ACTN4.370e-4582.69HTH lysR-type domain-containing protein n=2 Tax=Ac... [more]
A0A2D6U6Z8_9ACTN8.890e-4381.73HTH lysR-type domain-containing protein n=1 Tax=Ac... [more]
A0A6B1E6Q6_9ACTN5.990e-4172.38LysR family transcriptional regulator n=2 Tax=Acid... [more]
A0A6B0WJG6_9ACTN3.740e-4073.33LysR family transcriptional regulator n=7 Tax=Acid... [more]
UPI001AA06B6A5.040e-4075.24LysR family transcriptional regulator n=1 Tax=Rhab... [more]
A0A6G0A6E9_9ACTN6.780e-4069.52LysR family transcriptional regulator n=2 Tax=Bact... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000847Transcription regulator HTH, LysRPRINTSPR00039HTHLYSRcoord: 39..50
score: 38.89
coord: 18..29
score: 42.54
coord: 29..39
score: 38.54
IPR000847Transcription regulator HTH, LysRPFAMPF00126HTH_1coord: 3..60
e-value: 7.9E-17
score: 61.0
IPR000847Transcription regulator HTH, LysRPROSITEPS50931HTH_LYSRcoord: 1..56
score: 27.866
IPR036388Winged helix-like DNA-binding domain superfamilyGENE3D1.10.10.10coord: 1..87
e-value: 2.4E-22
score: 80.5
NoneNo IPR availablePANTHERPTHR30126UNCHARACTERIZED HTH-TYPE TRANSCRIPTIONAL REGULATOR YEIE-RELATEDcoord: 1..105
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..5
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..24
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 14..24
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 25..105
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 6..13
IPR036390Winged helix DNA-binding domain superfamilySUPERFAMILY46785"Winged helix" DNA-binding domaincoord: 1..105

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig72268contigM-pyrifera_M_contig72268:1..315 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig72268.17184.1mRNA_M-pyrifera_M_contig72268.17184.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig72268 1..1115 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig72268.17184.1 ID=prot_M-pyrifera_M_contig72268.17184.1|Name=mRNA_M-pyrifera_M_contig72268.17184.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=105bp
MDLRQLNALLAVAEHQSFSAAARALHTVQSNVSTHVARLEQEVGSTLIDR
AQGELTVEGEIVADRARRILTELRAIEDDLVALRGEVSGRVRAGVIGTTA
RWLVP
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000847Tscrpt_reg_HTH_LysR
IPR036388WH-like_DNA-bd_sf
IPR036390WH_DNA-bd_sf