prot_M-pyrifera_M_contig71813.17108.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig71813.17108.1
Unique Nameprot_M-pyrifera_M_contig71813.17108.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length87
Homology
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BLAST of mRNA_M-pyrifera_M_contig71813.17108.1 vs. uniprot
Match: D7FQJ6_ECTSI (Early-responsive to dehydration protein-related n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQJ6_ECTSI)

HSP 1 Score: 106 bits (264), Expect = 8.110e-25
Identity = 52/76 (68.42%), Postives = 62/76 (81.58%), Query Frame = 0 
Query:   11 QVFALFTPYGLLVLIPVNIKAVPVGSQDVRHESSINTFNQLSMSNIQHYDSRMWLHALGVYLLSTLAMHFLVVEYR 86
            +VFALF PYGLLVLIPVN+   P  S     +++INTFN+LSMSN+QHY+  MWLHALG+YLLS LAM+FLVVEYR
Sbjct:  137 KVFALFAPYGLLVLIPVNVMETPSDSNQA--QTNINTFNRLSMSNVQHYNPCMWLHALGIYLLSALAMYFLVVEYR 210
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BLAST of mRNA_M-pyrifera_M_contig71813.17108.1 vs. uniprot
Match: A0A836CHQ4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHQ4_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 1.240e-7
Identity = 30/52 (57.69%), Postives = 37/52 (71.15%), Query Frame = 0 
Query:   11 QVFALFTPYGLLVLIPVNIKAVPVGSQDVRHESSINTFNQLSMSNIQHYDSR 62
            +VF +F  YGL V+IP NI      S   R ++SIN+FNQLSMSNIQHYDS+
Sbjct:  143 KVFGIFALYGLAVIIPANIAGGQRNS--FRVQTSINSFNQLSMSNIQHYDSK 192
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig71813.17108.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FQJ6_ECTSI8.110e-2568.42Early-responsive to dehydration protein-related n=... [more]
A0A836CHQ4_9STRA1.240e-757.69Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR032880Calcium permeable stress-gated cation channel 1, N-terminal transmembrane domainPFAMPF13967RSN1_TMcoord: 12..82
e-value: 4.6E-10
score: 39.5
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 63..83
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 30..62
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..11
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 12..29
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 84..86
NoneNo IPR availableTMHMMTMhelixcoord: 12..34
NoneNo IPR availableTMHMMTMhelixcoord: 63..85

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig71813contigM-pyrifera_M_contig71813:110..370 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig71813.17108.1mRNA_M-pyrifera_M_contig71813.17108.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig71813 110..370 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig71813.17108.1 ID=prot_M-pyrifera_M_contig71813.17108.1|Name=mRNA_M-pyrifera_M_contig71813.17108.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=87bp
VKHGTCVRRDQVFALFTPYGLLVLIPVNIKAVPVGSQDVRHESSINTFNQ
LSMSNIQHYDSRMWLHALGVYLLSTLAMHFLVVEYR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR032880Csc1_N