prot_M-pyrifera_M_contig718.17102.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig718.17102.1
Unique Nameprot_M-pyrifera_M_contig718.17102.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length85
Homology
BLAST of mRNA_M-pyrifera_M_contig718.17102.1 vs. uniprot
Match: D7FP28_ECTSI (DNA-directed RNA polymerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP28_ECTSI)

HSP 1 Score: 173 bits (439), Expect = 8.040e-55
Identity = 82/85 (96.47%), Postives = 83/85 (97.65%), Query Frame = 0
Query:    1 LVTPFQCRLRDCTYSAPLWVNVRYTRGRQIVNKTNINIGRIPVMLLSSKCVLTGKSESELADMKECPYDPGGYFVVKGVEKVGWV 85
            LVTPFQCRLRDCTYSAPLWVNVRYTRGRQIVNKTNINIGRIPVMLLS KCVLTGKSE+ELADMKECPYDPGGYFVVKGVEKVG V
Sbjct:    4 LVTPFQCRLRDCTYSAPLWVNVRYTRGRQIVNKTNINIGRIPVMLLSCKCVLTGKSEAELADMKECPYDPGGYFVVKGVEKVGKV 88          
BLAST of mRNA_M-pyrifera_M_contig718.17102.1 vs. uniprot
Match: A0A6H5JAF8_9PHAE (DNA-directed RNA polymerase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAF8_9PHAE)

HSP 1 Score: 169 bits (427), Expect = 3.970e-47
Identity = 78/81 (96.30%), Postives = 80/81 (98.77%), Query Frame = 0
Query:    2 VTPFQCRLRDCTYSAPLWVNVRYTRGRQIVNKTNINIGRIPVMLLSSKCVLTGKSESELADMKECPYDPGGYFVVKGVEKV 82
            +TPFQCRLRDCTYSAPLWVNVRYTRGRQIVNKTNINIGRIPVMLLS KCVLTGKSE+ELADMKECPYDPGGYFVVKGVEKV
Sbjct:  153 ITPFQCRLRDCTYSAPLWVNVRYTRGRQIVNKTNINIGRIPVMLLSCKCVLTGKSEAELADMKECPYDPGGYFVVKGVEKV 233          
BLAST of mRNA_M-pyrifera_M_contig718.17102.1 vs. uniprot
Match: A0A7S3DT07_9STRA (DNA-directed RNA polymerase (Fragment) n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S3DT07_9STRA)

HSP 1 Score: 142 bits (358), Expect = 1.110e-39
Identity = 63/81 (77.78%), Postives = 73/81 (90.12%), Query Frame = 0
Query:    2 VTPFQCRLRDCTYSAPLWVNVRYTRGRQIVNKTNINIGRIPVMLLSSKCVLTGKSESELADMKECPYDPGGYFVVKGVEKV 82
            +TPFQCRLRDC+YSAP++VNVRYTRGRQIV K N+ IGR+P+ML S  CVLTGK+E ELA +KECPYDPGGYFV+KGVEKV
Sbjct:   52 ITPFQCRLRDCSYSAPIYVNVRYTRGRQIVVKRNVMIGRMPIMLRSQNCVLTGKTEDELAALKECPYDPGGYFVIKGVEKV 132          
BLAST of mRNA_M-pyrifera_M_contig718.17102.1 vs. uniprot
Match: A0A482SHA3_9ARCH (DNA-directed RNA polymerase n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SHA3_9ARCH)

HSP 1 Score: 133 bits (335), Expect = 1.740e-38
Identity = 62/81 (76.54%), Postives = 67/81 (82.72%), Query Frame = 0
Query:    2 VTPFQCRLRDCTYSAPLWVNVRYTRGRQIVNKTNINIGRIPVMLLSSKCVLTGKSESELADMKECPYDPGGYFVVKGVEKV 82
            VTPFQCRLRDCTYSAPL+VNV+YTR +QIV K NI IGRIP+ML S KCVL  KS  EL  +KEC YDPGGYFVVKG EKV
Sbjct:   23 VTPFQCRLRDCTYSAPLYVNVKYTRQKQIVVKNNIQIGRIPIMLRSEKCVLNNKSSEELGALKECEYDPGGYFVVKGTEKV 103          
BLAST of mRNA_M-pyrifera_M_contig718.17102.1 vs. uniprot
Match: A0A7S2XTK8_9STRA (DNA-directed RNA polymerase (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XTK8_9STRA)

HSP 1 Score: 137 bits (344), Expect = 3.570e-38
Identity = 61/80 (76.25%), Postives = 72/80 (90.00%), Query Frame = 0
Query:    3 TPFQCRLRDCTYSAPLWVNVRYTRGRQIVNKTNINIGRIPVMLLSSKCVLTGKSESELADMKECPYDPGGYFVVKGVEKV 82
            TPFQCRLRDCTYSAP++VNVRYTRGRQIV K  + +GR+P+ML SSKC+L+ K+E +LA MKECPYDPGGYFV+KGVEKV
Sbjct:  140 TPFQCRLRDCTYSAPIYVNVRYTRGRQIVIKKKVLVGRMPIMLRSSKCLLSHKTERQLAAMKECPYDPGGYFVIKGVEKV 219          
BLAST of mRNA_M-pyrifera_M_contig718.17102.1 vs. uniprot
Match: A0A7S2EFY4_TRICV (DNA-directed RNA polymerase (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EFY4_TRICV)

HSP 1 Score: 133 bits (334), Expect = 7.830e-38
Identity = 57/80 (71.25%), Postives = 73/80 (91.25%), Query Frame = 0
Query:    3 TPFQCRLRDCTYSAPLWVNVRYTRGRQIVNKTNINIGRIPVMLLSSKCVLTGKSESELADMKECPYDPGGYFVVKGVEKV 82
            +PFQCRLRDCTYSAP++V+VRYTRGRQIV K  + +GR+P+ML SSKC+L+GK+E +LA M+ECP+DPGGYF++KGVEKV
Sbjct:   51 SPFQCRLRDCTYSAPIYVDVRYTRGRQIVVKKKVVVGRMPIMLRSSKCMLSGKTERQLARMRECPHDPGGYFIIKGVEKV 130          
BLAST of mRNA_M-pyrifera_M_contig718.17102.1 vs. uniprot
Match: A0A1E7EUM7_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7EUM7_9STRA)

HSP 1 Score: 140 bits (354), Expect = 5.300e-37
Identity = 63/80 (78.75%), Postives = 71/80 (88.75%), Query Frame = 0
Query:    3 TPFQCRLRDCTYSAPLWVNVRYTRGRQIVNKTNINIGRIPVMLLSSKCVLTGKSESELADMKECPYDPGGYFVVKGVEKV 82
            TPFQCRLRDCTYSAP++VNVRYTRGRQIV K  + IG++P+ML S KC+L GKSE +LA MKECPYDPGGYFVVKGVEKV
Sbjct:  162 TPFQCRLRDCTYSAPIYVNVRYTRGRQIVVKRKVKIGQMPIMLRSQKCILNGKSEQDLARMKECPYDPGGYFVVKGVEKV 241          
BLAST of mRNA_M-pyrifera_M_contig718.17102.1 vs. uniprot
Match: B8BQM2_THAPS (DNA-directed RNA polymerase subunit beta n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BQM2_THAPS)

HSP 1 Score: 140 bits (353), Expect = 7.210e-37
Identity = 64/80 (80.00%), Postives = 71/80 (88.75%), Query Frame = 0
Query:    3 TPFQCRLRDCTYSAPLWVNVRYTRGRQIVNKTNINIGRIPVMLLSSKCVLTGKSESELADMKECPYDPGGYFVVKGVEKV 82
            TPFQCRLRDCTYSAP++VNVRYTRGRQIV K  + IGR+P+ML SSKC+L  KSE ELA MKECPYDPGGYFV+KGVEKV
Sbjct:   61 TPFQCRLRDCTYSAPIYVNVRYTRGRQIVVKKKVMIGRMPIMLRSSKCLLRDKSERELAQMKECPYDPGGYFVIKGVEKV 140          
BLAST of mRNA_M-pyrifera_M_contig718.17102.1 vs. uniprot
Match: I2CNY0_NANGC (DNA-directed RNA polymerase subunit beta n=3 Tax=Monodopsidaceae TaxID=425072 RepID=I2CNY0_NANGC)

HSP 1 Score: 138 bits (348), Expect = 3.420e-36
Identity = 62/81 (76.54%), Postives = 72/81 (88.89%), Query Frame = 0
Query:    2 VTPFQCRLRDCTYSAPLWVNVRYTRGRQIVNKTNINIGRIPVMLLSSKCVLTGKSESELADMKECPYDPGGYFVVKGVEKV 82
            VTPFQCRLRDCTYSAP+ V+VRYTRGRQIV K  + IGRIP+ML S KC+L G+SE+ELA+ KECPYDPGGYF+VKGVE+V
Sbjct:  121 VTPFQCRLRDCTYSAPITVDVRYTRGRQIVVKRGVMIGRIPIMLRSCKCILAGRSEAELAEKKECPYDPGGYFIVKGVERV 201          
BLAST of mRNA_M-pyrifera_M_contig718.17102.1 vs. uniprot
Match: A0A7S4QYU8_9STRA (DNA-directed RNA polymerase subunit beta n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QYU8_9STRA)

HSP 1 Score: 137 bits (346), Expect = 6.380e-36
Identity = 63/80 (78.75%), Postives = 72/80 (90.00%), Query Frame = 0
Query:    3 TPFQCRLRDCTYSAPLWVNVRYTRGRQIVNKTNINIGRIPVMLLSSKCVLTGKSESELADMKECPYDPGGYFVVKGVEKV 82
            TPFQCRLRDCTYSAP++V+VRYTRGRQIV K  I IGR+P+ML SSKC+LTGK+  +LA MKECP+DPGGYFVVKGVEKV
Sbjct:  295 TPFQCRLRDCTYSAPIYVDVRYTRGRQIVVKRKIMIGRLPIMLRSSKCLLTGKTHRQLARMKECPHDPGGYFVVKGVEKV 374          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig718.17102.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FP28_ECTSI8.040e-5596.47DNA-directed RNA polymerase n=1 Tax=Ectocarpus sil... [more]
A0A6H5JAF8_9PHAE3.970e-4796.30DNA-directed RNA polymerase n=1 Tax=Ectocarpus sp.... [more]
A0A7S3DT07_9STRA1.110e-3977.78DNA-directed RNA polymerase (Fragment) n=1 Tax=Amp... [more]
A0A482SHA3_9ARCH1.740e-3876.54DNA-directed RNA polymerase n=1 Tax=archaeon TaxID... [more]
A0A7S2XTK8_9STRA3.570e-3876.25DNA-directed RNA polymerase (Fragment) n=1 Tax=Att... [more]
A0A7S2EFY4_TRICV7.830e-3871.25DNA-directed RNA polymerase (Fragment) n=1 Tax=Tri... [more]
A0A1E7EUM7_9STRA5.300e-3778.75DNA-directed RNA polymerase subunit beta n=1 Tax=F... [more]
B8BQM2_THAPS7.210e-3780.00DNA-directed RNA polymerase subunit beta n=1 Tax=T... [more]
I2CNY0_NANGC3.420e-3676.54DNA-directed RNA polymerase subunit beta n=3 Tax=M... [more]
A0A7S4QYU8_9STRA6.380e-3678.75DNA-directed RNA polymerase subunit beta n=2 Tax=D... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.90.1100.10coord: 2..83
e-value: 3.4E-7
score: 31.6
NoneNo IPR availablePANTHERPTHR20856:SF8DNA-DIRECTED RNA POLYMERASE III SUBUNIT RPC2coord: 2..82
NoneNo IPR availableSUPERFAMILY64484beta and beta-prime subunits of DNA dependent RNA-polymerasecoord: 2..83
IPR007644RNA polymerase, beta subunit, protrusionPFAMPF04563RNA_pol_Rpb2_1coord: 2..82
e-value: 5.0E-29
score: 101.3
IPR015712DNA-directed RNA polymerase, subunit 2PANTHERPTHR20856DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2coord: 2..82

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig718contigM-pyrifera_M_contig718:4931..6637 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig718.17102.1mRNA_M-pyrifera_M_contig718.17102.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig718 4931..6637 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig718.17102.1 ID=prot_M-pyrifera_M_contig718.17102.1|Name=mRNA_M-pyrifera_M_contig718.17102.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=85bp
LVTPFQCRLRDCTYSAPLWVNVRYTRGRQIVNKTNINIGRIPVMLLSSKC
VLTGKSESELADMKECPYDPGGYFVVKGVEKVGWV
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007644RNA_pol_bsu_protrusion
IPR015712DNA-dir_RNA_pol_su2