prot_M-pyrifera_M_contig6979.16713.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig6979.16713.1
Unique Nameprot_M-pyrifera_M_contig6979.16713.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length305
Homology
BLAST of mRNA_M-pyrifera_M_contig6979.16713.1 vs. uniprot
Match: A0A6H5KP03_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP03_9PHAE)

HSP 1 Score: 305 bits (781), Expect = 7.350e-95
Identity = 171/320 (53.44%), Postives = 217/320 (67.81%), Query Frame = 0
Query:    1 VSELFATDRGDAVSVEQSVFVTQN--TTLEMCVIGTGFSKAPIAADDAIDSDIWW---GCTAPKIHAAGGDEDALLSKQDVEYLIRSNGGVVTANPQVSTAFVIVGSKNSVTVQNIVAAGK--YNVVGYRWILECIERNAYEFPSMKYFRAMSPDIRAHLSRTKDEYGDDYTEHTNAEALSQLLLNMPEPPRVAEDAGM----SWLSPLLALDEQDRATLMDGPDFIFADTGRCLVYCDLYEDLGSAEPPGVAKR-----CDDPTPSAREMIPHNVLESAAEAVRLYGGDVSRSLHAGVTHVIMDPGDVTRHDLIRKRIR 304
            VSELFAT  GD V+V++ VFV  +  T LE+CV+GTGFS   +   + ID D WW   G T  K  A GG E    +KQD+E LIR +GG VTANP  +T+FV+VG   SV+V+N++A+ K  YNVVGYRW+LECI + AY+FPSM++ RA+SP+ R +    KD++GDDYTE T+A  LS+L+LN+P   R  +  G     SWLSPLL LD++D  TLM GPDF+FA  G+C VYCDL+ DLG AEPP  A         DP P ARE  P+N L S A AVR YGG+V+RSLHAGVTHV++ P D TR   I+ R+R
Sbjct:  362 VSELFATAGGDEVTVKEKVFVAASGRTALELCVVGTGFSGVHVPDVNTIDVDAWWAPAGSTRRK--AEGGHEGR--TKQDIELLIREHGGTVTANPMPTTSFVVVGDTTSVSVKNLIASPKKEYNVVGYRWVLECIHQKAYKFPSMEHVRALSPEAREYFEAVKDDFGDDYTELTDAAQLSKLMLNIPPTKRACQGGGKCATPSWLSPLLELDDEDAETLMHGPDFLFA--GKCHVYCDLFTDLGPAEPPRGADGDASGDTTDPRP-AREENPNNPLGSTARAVRAYGGEVARSLHAGVTHVVVHPEDTTRIGDIKDRMR 674          
BLAST of mRNA_M-pyrifera_M_contig6979.16713.1 vs. uniprot
Match: D7G6Z3_ECTSI (DNA ligase IV n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6Z3_ECTSI)

HSP 1 Score: 302 bits (773), Expect = 3.150e-91
Identity = 169/320 (52.81%), Postives = 216/320 (67.50%), Query Frame = 0
Query:    1 VSELFATDRGDAVSVEQSVFVTQN--TTLEMCVIGTGFSKAPIAADDAIDSDIWW---GCTAPKIHAAGGDEDALLSKQDVEYLIRSNGGVVTANPQVSTAFVIVGSKNSVTVQNIVAAGK--YNVVGYRWILECIERNAYEFPSMKYFRAMSPDIRAHLSRTKDEYGDDYTEHTNAEALSQLLLNMPEPPRVAEDAGMS----WLSPLLALDEQDRATLMDGPDFIFADTGRCLVYCDLYEDLGSAEPPGVAKR-----CDDPTPSAREMIPHNVLESAAEAVRLYGGDVSRSLHAGVTHVIMDPGDVTRHDLIRKRIR 304
            VSELFA+  GD V+V++ VFV  +  T LE+CV+GT FS   +   + ID D WW   G T  K  A GG E    +KQD+E LIR +GG VTANP  +T+FV+VG   SV+V+N++A+ K  YNVVGYRW+LECI + AY+FPSM++ RA+SP+ R +    KD++GDDYTE T+A  LS+L+LN+P   R  +  G S    WLSPLL LD++D  TLM GPDF+FA  G+C VYCDL+ DLG AEPPG A         DP P ARE  P N L S A AVR +GG+V+RSLHAGVTHV++ P D TR   I+ R+R
Sbjct:  717 VSELFASTGGDEVTVKEKVFVAASGRTALELCVVGTSFSGVHVPDVNTIDVDAWWAPAGSTRRK--AEGGHEGR--TKQDIELLIREHGGTVTANPMPTTSFVVVGDTTSVSVKNLIASPKKEYNVVGYRWVLECIHQKAYKFPSMEHVRALSPEAREYFEAVKDDFGDDYTELTDAAQLSKLMLNIPPTKRACQGGGKSATPSWLSPLLELDDEDAGTLMHGPDFLFA--GKCHVYCDLFTDLGPAEPPGGADGNGSGDTTDPRP-AREENPTNSLGSTARAVRAHGGEVARSLHAGVTHVVVHPEDTTRIGDIKDRMR 1029          
BLAST of mRNA_M-pyrifera_M_contig6979.16713.1 vs. uniprot
Match: UPI00106B19DC (LOW QUALITY PROTEIN: DNA ligase 4-like n=1 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI00106B19DC)

HSP 1 Score: 85.5 bits (210), Expect = 8.240e-15
Identity = 66/223 (29.60%), Postives = 98/223 (43.95%), Query Frame = 0
Query:   73 KQDVEYLIRSNGGVVTANPQVSTAFVIVGSKNSVTVQNIVAAGKYNVVGYRWILECIERNAYEFPSMKYFRAMSPDIRAHLSRTKDEYGDDYTEHTNAEALSQLLLNMPEPPRVAEDAGMSWLSPLLALDEQDRATLMDGPDFIFADTGRCLVYCDLYEDLGSAEPPGVAKRCDDPTPSAREMIPHNVLESAAEAVRLYGGDVSRSLHAGVTHVIMDPGDVTR 295
            K ++E  I  NGG V  NP   T F +V  K++V +QNIV    Y++V   W+LEC+E N     S  +   MSP  R   +   DE GD YT   N  +L ++   + E   + +          L  +E  +      P+       +   Y D Y ++G            DP    R  IP+  L+  A  ++ YG  +S      VTHVIM+P D++R
Sbjct:  615 KVEIETKIIENGGSVVQNPGKET-FCVVAHKSNVRLQNIVKQAVYDIVYSNWLLECLESNKLLPWSPSHMMHMSPKTREKFALDYDENGDSYTRDLNVASLKEIFQKIDEKQNMVK----------LTREEIVQVESRYFPNSPLGLFRQYRFYVDQYLEIG------------DP----RTKIPNCSLDIQAAELQYYGAQLSDEFDEDVTHVIMNPRDLSR 810          
BLAST of mRNA_M-pyrifera_M_contig6979.16713.1 vs. uniprot
Match: A0A4D9D567_9STRA (DNA ligase IV n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D567_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 1.280e-7
Identity = 52/211 (24.64%), Postives = 90/211 (42.65%), Query Frame = 0
Query:  109 QNIVAAGKYNVVGYRWILECIERNAYEFPSMKYFRAMSPDIRAHLSRTKDEYGDDYTEHTNAEALSQLLLNMPE-PPRVAEDAGMSWLSPLL--ALDEQDRATLMDGPDFIFADTGRCLVYCDLYEDLGSAEPPGVAKRCDDPTPSAREM------------IPHNVLESAAEAVRLYGGDVSRSLHAGVTHVIMDPGDVTRHDLIRKRIR 304
            Q  +   + +++   W++EC+       P  +++  M+   R  +    D +GD +        L ++   MP  PP        +W   +   A  + + A L     F    + R ++Y D Y D G   PP V +  D+     +E+            +P   L++A   +RL+G  +S SLHA VTHV++D  +  R+ LI  R R
Sbjct:  786 QAAMREARIDILVVDWLVECLGAGRRIEPRYEHYVGMARGTRRRMEGLVDRFGDPWIPGEGIR-LEEVFARMPSLPPSRGPSLSGAWRCHVREGAWGDDEGAILRGVMPFY---SPRQIIYADRYADCGRVLPP-VGEEDDEEATDDKEVGTREAKGGKRPALPFTTLDAAVILLRLHGAKISSSLHANVTHVLVDREERRRYSLILARKR 991          
BLAST of mRNA_M-pyrifera_M_contig6979.16713.1 vs. uniprot
Match: W7TXB4_9STRA (BRCT domain protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TXB4_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 4.100e-7
Identity = 53/212 (25.00%), Postives = 92/212 (43.40%), Query Frame = 0
Query:  109 QNIVAAGKYNVVGYRWILECIERNAYEFPSMKYFRAMSPDIRAHLSRTKDEYGDDYTEHTNAEALSQLLLNMPE--PPRVAEDAGMSWLSPLL--ALDEQDRATLMDGPDFIFADTGRCLVYCDLYEDLGSAEPPGVAKRCDDPTPSAREM------------IPHNVLESAAEAVRLYGGDVSRSLHAGVTHVIMDPGDVTRHDLIRKRIR 304
            Q  +   + +++   W++EC+       P  +++  M    R  +    D +GD +     +  L ++   MP   P R    +G +W   +   A  + + A L     F    + R ++Y D Y D G   PP V +  D+     +E+            +P   L++A   +RL+G  +S SLHA VTHV++D  +  R+ LI  R R
Sbjct:  222 QAAIREARIDILVVDWLVECLGAGRRIEPRYEHYVGMDRGTRRRMEGLVDGFGDPWIPREGSR-LEEVFARMPSLSPSRGPSLSG-AWRCHVREGAWGDDEDAILRGVVPFY---SPRQIIYADRYADCGRVLPP-VGEEDDEEATDDKEVGTREAKGRKRHALPFTTLDAAVILLRLHGAKISSSLHANVTHVLVDREERRRYSLILARKR 427          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig6979.16713.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5KP03_9PHAE7.350e-9553.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G6Z3_ECTSI3.150e-9152.81DNA ligase IV n=1 Tax=Ectocarpus siliculosus TaxID... [more]
UPI00106B19DC8.240e-1529.60LOW QUALITY PROTEIN: DNA ligase 4-like n=1 Tax=Den... [more]
A0A4D9D567_9STRA1.280e-724.64DNA ligase IV n=1 Tax=Nannochloropsis salina CCMP1... [more]
W7TXB4_9STRA4.100e-725.00BRCT domain protein n=1 Tax=Nannochloropsis gadita... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001357BRCT domainPFAMPF16589BRCT_2coord: 72..133
e-value: 1.9E-6
score: 28.2
IPR001357BRCT domainPROSITEPS50172BRCTcoord: 72..132
score: 10.836
IPR036420BRCT domain superfamilyGENE3D3.40.50.10190coord: 221..304
e-value: 3.0E-5
score: 26.0
IPR036420BRCT domain superfamilyGENE3D3.40.50.10190coord: 65..183
e-value: 3.5E-23
score: 84.0
IPR036420BRCT domain superfamilySUPERFAMILY52113BRCT domaincoord: 72..132
NoneNo IPR availablePANTHERPTHR45997FAMILY NOT NAMEDcoord: 69..295
IPR029710DNA ligase 4PANTHERPTHR45997:SF1DNA LIGASE 4coord: 69..295

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig6979contigM-pyrifera_M_contig6979:5533..9654 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig6979.16713.1mRNA_M-pyrifera_M_contig6979.16713.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig6979 5533..9654 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig6979.16713.1 ID=prot_M-pyrifera_M_contig6979.16713.1|Name=mRNA_M-pyrifera_M_contig6979.16713.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=305bp
VSELFATDRGDAVSVEQSVFVTQNTTLEMCVIGTGFSKAPIAADDAIDSD
IWWGCTAPKIHAAGGDEDALLSKQDVEYLIRSNGGVVTANPQVSTAFVIV
GSKNSVTVQNIVAAGKYNVVGYRWILECIERNAYEFPSMKYFRAMSPDIR
AHLSRTKDEYGDDYTEHTNAEALSQLLLNMPEPPRVAEDAGMSWLSPLLA
LDEQDRATLMDGPDFIFADTGRCLVYCDLYEDLGSAEPPGVAKRCDDPTP
SAREMIPHNVLESAAEAVRLYGGDVSRSLHAGVTHVIMDPGDVTRHDLIR
KRIR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001357BRCT_dom
IPR036420BRCT_dom_sf
IPR029710LIG4