prot_M-pyrifera_M_contig69670.16691.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig69670.16691.1
Unique Nameprot_M-pyrifera_M_contig69670.16691.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length149
Homology
BLAST of mRNA_M-pyrifera_M_contig69670.16691.1 vs. uniprot
Match: A0A165BAI5_EXIGL (DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1 Tax=Exidia glandulosa HHB12029 TaxID=1314781 RepID=A0A165BAI5_EXIGL)

HSP 1 Score: 150 bits (380), Expect = 2.780e-43
Identity = 76/145 (52.41%), Postives = 109/145 (75.17%), Query Frame = 0
Query:    6 VEDTTDQLYVRFFGD-DVNTKAAKEFVADIGHRGAKRGIVVFSGKLSPMARKIL--LASDKPVELFKDRELQVDVTEHELVPRHVLLTDDAKAALLKRYRLRENQLPRIQQSDPIARFLGLRRGQVCKIIRPSETAGRYVTYRIC 147
            V+D TDQL+V F  D +V+ K  ++F+  +  +  +RGI+VFSG ++P ARK++  ++ D  +E F + +L V++T H LVP+H ++T DAK ALL+RYRL+E QLPRIQ +DP+AR+ GL+RGQV KI RPSET+GRY +YRIC
Sbjct:   62 VKDQTDQLFVFFCEDKNVSIKTMRKFLDVLQTKNIQRGIIVFSGTMTPSARKVITGMSQDYKLEEFAEADLIVNITHHILVPKHEVMTPDAKKALLERYRLKETQLPRIQLADPVARYYGLKRGQVVKITRPSETSGRYASYRIC 206          
BLAST of mRNA_M-pyrifera_M_contig69670.16691.1 vs. uniprot
Match: D8Q421_SCHCM (DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1 Tax=Schizophyllum commune (strain H4-8 / FGSC 9210) TaxID=578458 RepID=D8Q421_SCHCM)

HSP 1 Score: 150 bits (379), Expect = 4.290e-43
Identity = 74/145 (51.03%), Postives = 107/145 (73.79%), Query Frame = 0
Query:    7 EDTTDQLYVRFFGDD--VNTKAAKEFVADIGHRGAKRGIVVFSGKLSPMARKILLA--SDKPVELFKDRELQVDVTEHELVPRHVLLTDDAKAALLKRYRLRENQLPRIQQSDPIARFLGLRRGQVCKIIRPSETAGRYVTYRIC 147
            +DTTDQ++V FF D+  V  K  ++ +  +  +G +RGI++F G ++P ARK+++A  S   +E F + +L V++T H LVP+H++L  + K  LL+RYRL+E QLPRIQ +DP+AR+ GLRRGQV KIIRPSET+GRY +YRIC
Sbjct:   66 DDTTDQIFV-FFSDERSVGVKTMRKLLGILEEKGIRRGIIIFPGNMTPAARKVIVAMQSQYRLEEFSEADLLVNITHHTLVPQHIVLKPEEKRELLERYRLKETQLPRIQIADPVARYFGLRRGQVVKIIRPSETSGRYASYRIC 209          
BLAST of mRNA_M-pyrifera_M_contig69670.16691.1 vs. uniprot
Match: D7G1Y9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1Y9_ECTSI)

HSP 1 Score: 148 bits (373), Expect = 3.670e-42
Identity = 76/154 (49.35%), Postives = 106/154 (68.83%), Query Frame = 0
Query:    1 MTVAMVEDTTDQLYVRFFGDD--VNTKAAKEFVADIGHRGAKRGIVVFSGKLSPMARKIL--LASDKPVEL--FKDRELQVDVTEHELVPRHVLLTDDAKAALLKRYRLRENQLPRIQQSDPIARFLGLRRGQVCKIIRPSETAGRYVTYRICV 148
            + V  V+D  DQ++V FF DD  V  K  + +   +     KR I+V  G ++P AR  +  L + + V++  FKD EL +D+TEH LVP H +L+ + KA LLKRY+L++ QLPRIQ +DP+ARF G+++GQVCKI RPSETAGRYVTYR+C+
Sbjct:   60 LLVEKVDDPMDQIFV-FFPDDEKVGVKPIRSYSEKMLEEEVKRAIIVIKGGITPFARSAIQELCAQREVQVEDFKDAELMLDITEHTLVPEHQVLSSEQKAELLKRYKLKDTQLPRIQSTDPVARFFGMQKGQVCKITRPSETAGRYVTYRLCI 212          
BLAST of mRNA_M-pyrifera_M_contig69670.16691.1 vs. uniprot
Match: A0A6S8FF23_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A6S8FF23_9STRA)

HSP 1 Score: 147 bits (371), Expect = 5.510e-42
Identity = 76/147 (51.70%), Postives = 105/147 (71.43%), Query Frame = 0
Query:    3 VAMVEDTTDQLYVRFFGDD-VNTKAAKEFVADIGHRGAKRGIVVFSGKLSPMARKIL--LASDKPVELFKDRELQVDVTEHELVPRHVLLTDDAKAALLKRYRLRENQLPRIQQSDPIARFLGLRRGQVCKIIRPSETAGRYVTYRI 146
            V  V+D TD+L+V F  D+ +  +  K++   +     KR I+V   K+SP A++ +  +  +  +E FK+ EL VD+TEHELVP H +LT+D K+ALLKRY+L++ QLPR++ +DPIAR+ GL RGQVCKIIR SETAGRYVTYRI
Sbjct:   54 VTKVDDPTDKLFVFFPVDEKLGVQPIKKYCIHMNQEQVKRAIIVVEDKISPFAKQAITEMQPEIHIETFKEAELLVDITEHELVPTHEVLTNDEKSALLKRYKLKDTQLPRMKPNDPIARYFGLSRGQVCKIIRASETAGRYVTYRI 200          
BLAST of mRNA_M-pyrifera_M_contig69670.16691.1 vs. uniprot
Match: A0A550CHF0_9AGAR (DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1 Tax=Auriculariopsis ampla TaxID=97359 RepID=A0A550CHF0_9AGAR)

HSP 1 Score: 145 bits (365), Expect = 5.760e-41
Identity = 73/145 (50.34%), Postives = 104/145 (71.72%), Query Frame = 0
Query:    7 EDTTDQLYVRFFGDD--VNTKAAKEFVADIGHRGAKRGIVVFSGKLSPMARKILLA--SDKPVELFKDRELQVDVTEHELVPRHVLLTDDAKAALLKRYRLRENQLPRIQQSDPIARFLGLRRGQVCKIIRPSETAGRYVTYRIC 147
            +D TDQ++V F+ D+  V  K  ++ +  +  +G  RGI++F G ++P ARK++LA  ++  +E F + +L V++T H LVP+HV+L    K  LL RYRL+E QLPRIQ +DP+AR+ GLRRGQV KIIRPSET+GRY +YRIC
Sbjct:   67 DDPTDQIFV-FYSDEKSVGVKTMRKLLGILEEKGIHRGIIIFPGNMTPAARKVILAMSANYRLEEFSEADLLVNITHHTLVPQHVVLKPQEKKDLLDRYRLKETQLPRIQLADPVARYFGLRRGQVVKIIRPSETSGRYASYRIC 210          
BLAST of mRNA_M-pyrifera_M_contig69670.16691.1 vs. uniprot
Match: A0A1I7SWF6_BURXY (RPB5 homolog n=3 Tax=Bilateria TaxID=33213 RepID=A0A1I7SWF6_BURXY)

HSP 1 Score: 144 bits (362), Expect = 1.680e-40
Identity = 75/152 (49.34%), Postives = 105/152 (69.08%), Query Frame = 0
Query:    1 MTVAMVEDTTDQLYVRFFGDD--VNTKAAKEFVADIGHRGAKRGIVVFSGKLSPMARKIL--LASDKPVELFKDRELQVDVTEHELVPRHVLLTDDAKAALLKRYRLRENQLPRIQQSDPIARFLGLRRGQVCKIIRPSETAGRYVTYRICV 148
            + VA  +D TDQ+YV FF +D  +  K  K F   +  +   R I+V  G ++P +++ +  +     +E+F + EL V++TEHELVP HV++T D KA LL RY+L++ QLPRIQ SDP++R+ GL+RGQV KIIRPSETAGRY+TYRI V
Sbjct:   62 LLVAHNDDPTDQMYV-FFPEDPKIGIKTIKAFCQQMQEQNITRAIIVVQGGMTPSSKQAVNDMMPKYQLEVFLEAELMVNITEHELVPEHVVMTQDEKAELLARYKLKDTQLPRIQLSDPVSRYFGLKRGQVVKIIRPSETAGRYITYRIVV 212          
BLAST of mRNA_M-pyrifera_M_contig69670.16691.1 vs. uniprot
Match: W7U8C8_9STRA (Dna-directed rna polymerases ii 24 kDa n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U8C8_9STRA)

HSP 1 Score: 144 bits (362), Expect = 1.940e-40
Identity = 74/154 (48.05%), Postives = 108/154 (70.13%), Query Frame = 0
Query:    1 MTVAMVEDTTDQLYVRFFGDD---VNTKAAKEFVADIGHRGAKRGIVVFSGKLSPMARKILLASDKP---VELFKDRELQVDVTEHELVPRHVLLTDDAKAALLKRYRLRENQLPRIQQSDPIARFLGLRRGQVCKIIRPSETAGRYVTYRICV 148
            + V  ++D  D ++V FF DD   + TK  +++V  +   G+  GI+++   ++ +A+K+L     P   +E+FK+ EL VD+TEH LVP HV+LT D KA +L RY+L+E+QLP+IQ +DPIAR+ GL+RG V KIIR SETAGRY+TYR+CV
Sbjct:   65 INVGKIDDAADVVFV-FFSDDEKGLGTKPIQKYVERLLQAGSSCGIIIYRNNITAIAKKLLQPGAIPGVKLEVFKESELLVDITEHTLVPEHVVLTPDQKAEVLGRYKLKESQLPKIQSADPIARYYGLQRGTVVKIIRLSETAGRYITYRVCV 217          
BLAST of mRNA_M-pyrifera_M_contig69670.16691.1 vs. uniprot
Match: A0A2T9ZH13_9FUNG (DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1 Tax=Smittium megazygosporum TaxID=133381 RepID=A0A2T9ZH13_9FUNG)

HSP 1 Score: 141 bits (356), Expect = 2.410e-40
Identity = 73/146 (50.00%), Postives = 104/146 (71.23%), Query Frame = 0
Query:    7 EDTTDQLYVRFFGDD--VNTKAAKEFVADIGHRGAKRGIVVFSGKLSPMARKIL--LASDKPVELFKDRELQVDVTEHELVPRHVLLTDDAKAALLKRYRLRENQLPRIQQSDPIARFLGLRRGQVCKIIRPSETAGRYVTYRICV 148
            +D +DQL V FF DD  V  K  + +   +  +G  +GI+V+   ++P A KI+  ++S   +E F + +L V++T HELVP+HV+L D+ K ALL RY L+E+QLPRIQ SDP+A++ GL++GQV KIIR SETAGRY+TYR+CV
Sbjct:    9 DDPSDQLMV-FFPDDLSVGIKPIRSYAEKMVAQGVTKGIIVYRKTITPSANKIISQMSSKYQMEAFNESDLLVNITHHELVPKHVVLKDEEKKALLARYHLKESQLPRIQSSDPVAKYYGLKKGQVVKIIRASETAGRYLTYRLCV 153          
BLAST of mRNA_M-pyrifera_M_contig69670.16691.1 vs. uniprot
Match: A0A4P9XTH3_9FUNG (DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=2 Tax=Zoopagales TaxID=78899 RepID=A0A4P9XTH3_9FUNG)

HSP 1 Score: 143 bits (360), Expect = 3.010e-40
Identity = 74/146 (50.68%), Postives = 109/146 (74.66%), Query Frame = 0
Query:    7 EDTTDQLYVRFFGDD--VNTKAAKEFVADIGHRGAKRGIVVFSGKLSPMARKILLASDKPVEL--FKDRELQVDVTEHELVPRHVLLTDDAKAALLKRYRLRENQLPRIQQSDPIARFLGLRRGQVCKIIRPSETAGRYVTYRICV 148
            +D T+QL V FF D+  V  K A+++   +  +G +RGIV++   ++  A+K+  AS K VE+  F++ EL V++T+H+LVP+HV+LT + K  LL+RYRL+E QLPRIQ +DP+A++ GL+RGQV KIIR SETAGRY+TYR+C+
Sbjct:   64 DDPTEQLTV-FFPDERSVGIKTARKYCEKMIAQGIRRGIVIYIKTITSSAQKVFAASSKKVEVETFQEAELLVNITKHQLVPKHVVLTPEEKLTLLQRYRLKETQLPRIQINDPVAKYYGLKRGQVVKIIRASETAGRYLTYRLCL 208          
BLAST of mRNA_M-pyrifera_M_contig69670.16691.1 vs. uniprot
Match: A0A0J0XV17_9TREE (DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1 Tax=Cutaneotrichosporon oleaginosum TaxID=879819 RepID=A0A0J0XV17_9TREE)

HSP 1 Score: 143 bits (360), Expect = 3.100e-40
Identity = 72/145 (49.66%), Postives = 105/145 (72.41%), Query Frame = 0
Query:    7 EDTTDQLYVRFFGDDVNTKAA-KEFVADIGHRGAKRGIVVFSGKLSPMARKILLA--SDKPVELFKDRELQVDVTEHELVPRHVLLTDDAKAALLKRYRLRENQLPRIQQSDPIARFLGLRRGQVCKIIRPSETAGRYVTYRICV 148
            ED ++++Y+ F  +   +KAA K F+  +   GAKRGI+V+S K+SP A+K LL   S+  +E F + +L V++T+H LVP+H ++T   K  L+KRYRL++ QLPRI  +DP+AR+ G+RRGQV +I R SETAGRY+TYRIC+
Sbjct:   65 EDRSNRIYIHFCPEKNVSKAAMKTFITSLDAAGAKRGIIVWSEKMSPAAKKTLLEMQSEYHLEDFPESDLLVNITKHVLVPKHTIMTSQEKTELIKRYRLKDTQLPRIMVTDPVARYYGMRRGQVMRIERSSETAGRYITYRICM 209          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig69670.16691.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A165BAI5_EXIGL2.780e-4352.41DNA-directed RNA polymerases I, II, and III subuni... [more]
D8Q421_SCHCM4.290e-4351.03DNA-directed RNA polymerases I, II, and III subuni... [more]
D7G1Y9_ECTSI3.670e-4249.35Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6S8FF23_9STRA5.510e-4251.70Hypothetical protein n=1 Tax=Aplanochytrium stocch... [more]
A0A550CHF0_9AGAR5.760e-4150.34DNA-directed RNA polymerases I, II, and III subuni... [more]
A0A1I7SWF6_BURXY1.680e-4049.34RPB5 homolog n=3 Tax=Bilateria TaxID=33213 RepID=A... [more]
W7U8C8_9STRA1.940e-4048.05Dna-directed rna polymerases ii 24 kDa n=2 Tax=Mon... [more]
A0A2T9ZH13_9FUNG2.410e-4050.00DNA-directed RNA polymerases I, II, and III subuni... [more]
A0A4P9XTH3_9FUNG3.010e-4050.68DNA-directed RNA polymerases I, II, and III subuni... [more]
A0A0J0XV17_9TREE3.100e-4049.66DNA-directed RNA polymerases I, II, and III subuni... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000783RNA polymerase, subunit H/Rpb5 C-terminalPFAMPF01191RNA_pol_Rpb5_Ccoord: 75..147
e-value: 3.5E-31
score: 106.9
IPR035913RPB5-like RNA polymerase subunit superfamilyGENE3D3.90.940.20coord: 76..148
e-value: 1.3E-33
score: 116.5
IPR035913RPB5-like RNA polymerase subunit superfamilySUPERFAMILY55287RPB5-like RNA polymerase subunitcoord: 73..148
IPR036710RNA polymerase Rpb5, N-terminal domain superfamilyGENE3D3.40.1340.10coord: 1..75
e-value: 1.4E-8
score: 36.9
IPR036710RNA polymerase Rpb5, N-terminal domain superfamilySUPERFAMILY53036Eukaryotic RPB5 N-terminal domaincoord: 7..76
NoneNo IPR availablePANTHERPTHR10535:SF0DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1coord: 4..148
NoneNo IPR availablePRODOMPD005155coord: 81..147
e-value: 3.0E-19
score: 230.0
IPR039531DNA-directed RNA polymerase subunit Rpb5-likePANTHERPTHR10535DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1coord: 4..148
IPR020609Archaeal RpoH /eukaryotic RPB5 RNA polymerase subunitHAMAPMF_00025RNApol_RpoH_RPB5coord: 75..148
score: 20.916

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig69670contigM-pyrifera_M_contig69670:322..768 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig69670.16691.1mRNA_M-pyrifera_M_contig69670.16691.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig69670 322..768 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig69670.16691.1 ID=prot_M-pyrifera_M_contig69670.16691.1|Name=mRNA_M-pyrifera_M_contig69670.16691.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=149bp
MTVAMVEDTTDQLYVRFFGDDVNTKAAKEFVADIGHRGAKRGIVVFSGKL
SPMARKILLASDKPVELFKDRELQVDVTEHELVPRHVLLTDDAKAALLKR
YRLRENQLPRIQQSDPIARFLGLRRGQVCKIIRPSETAGRYVTYRICV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000783RNA_pol_subH/Rpb5_C
IPR035913RPB5-like_sf
IPR036710RNA_pol_Rpb5_N_sf
IPR039531Rpb5-like
IPR020609RpoH/RPB5